Wall clock time and date at job start Tue Mar 9 2021 13:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.47047 * 2 1 4 4 C 1.34227 * 116.99667 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00612 * 359.97438 * 4 3 2 6 6 C 1.50710 * 119.99699 * 180.02562 * 4 3 2 7 7 H 1.08993 * 112.85162 * 48.80292 * 6 4 3 8 8 C 1.53785 * 113.61098 * 179.97438 * 6 4 3 9 9 C 1.53792 * 87.07968 * 89.20111 * 8 6 4 10 10 F 1.39897 * 113.60969 * 270.79842 * 9 8 6 11 11 C 1.52999 * 113.61269 * 139.97888 * 9 8 6 12 12 S 1.81400 * 109.46567 * 184.99783 * 11 9 8 13 13 O 1.42097 * 110.54381 * 68.38002 * 12 11 9 14 14 O 1.42098 * 110.54611 * 291.61929 * 12 11 9 15 15 O 1.52207 * 104.44576 * 180.02562 * 12 11 9 16 16 C 1.35900 * 113.99788 * 75.00118 * 15 12 11 17 17 C 1.38710 * 120.05354 * 90.00179 * 16 15 12 18 18 C 1.50699 * 120.03036 * 359.97438 * 17 16 15 19 19 O 1.42907 * 109.46603 * 74.72869 * 18 17 16 20 20 Si 1.86298 * 109.47032 * 194.72172 * 18 17 16 21 21 C 1.38169 * 119.93902 * 179.71939 * 17 16 15 22 22 C 1.38246 * 120.05897 * 0.27854 * 21 17 16 23 23 C 1.38278 * 120.10968 * 359.97336 * 22 21 17 24 24 C 1.38123 * 120.06082 * 359.97438 * 23 22 21 25 25 C 1.53780 * 113.68787 * 277.53093 * 6 4 3 26 26 H 1.09000 * 109.47204 * 300.00395 * 1 2 3 27 27 H 1.09001 * 109.47187 * 60.00237 * 1 2 3 28 28 H 1.08997 * 109.47288 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47159 * 240.00160 * 2 1 3 30 30 H 1.08996 * 109.46949 * 120.00163 * 2 1 3 31 31 H 1.08995 * 113.61869 * 334.65389 * 8 6 4 32 32 H 1.08998 * 113.61385 * 203.74542 * 8 6 4 33 33 H 1.08997 * 109.46846 * 64.99983 * 11 9 8 34 34 H 1.08996 * 109.47097 * 304.99810 * 11 9 8 35 35 H 1.08996 * 109.47117 * 314.72782 * 18 17 16 36 36 H 0.96697 * 114.00527 * 59.99993 * 19 18 17 37 37 H 1.48506 * 109.99834 * 58.68765 * 20 18 17 38 38 H 1.48502 * 110.00011 * 180.02562 * 20 18 17 39 39 H 1.08006 * 119.97121 * 180.25142 * 21 17 16 40 40 H 1.07994 * 119.94104 * 179.97438 * 22 21 17 41 41 H 1.07999 * 119.97544 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.03505 * 180.02562 * 24 23 22 43 43 H 1.08995 * 113.61288 * 156.32739 * 25 6 4 44 44 H 1.09001 * 113.61513 * 25.42495 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.4716 3.5810 0.7564 8 6 5.4583 2.9680 -0.0001 9 6 5.3803 2.9457 -1.5359 10 9 5.3595 1.6559 -2.0771 11 6 6.4032 3.8587 -2.2148 12 16 6.1171 3.8602 -4.0061 13 8 4.8909 4.5085 -4.3147 14 8 6.4361 2.5924 -4.5631 15 8 7.1851 4.7924 -4.5604 16 6 8.4319 4.2522 -4.5845 17 6 8.8647 3.5534 -5.7018 18 6 7.9524 3.3918 -6.8904 19 8 7.8789 4.6268 -7.6057 20 14 8.6229 2.0637 -8.0117 21 6 10.1348 3.0101 -5.7261 22 6 10.9720 3.1575 -4.6359 23 6 10.5410 3.8493 -3.5188 24 6 9.2725 4.3952 -3.4899 25 6 3.9857 3.5797 -1.3957 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.9129 2.0742 0.4270 32 1 5.8767 3.8905 0.4024 33 1 7.4093 3.4941 -2.0078 34 1 6.2977 4.8726 -1.8291 35 1 6.9566 3.1101 -6.5484 36 1 8.7308 4.9389 -7.9402 37 1 8.7342 0.7816 -7.2705 38 1 7.7325 1.8950 -9.1882 39 1 10.4738 2.4693 -6.5974 40 1 11.9642 2.7318 -4.6567 41 1 11.1969 3.9635 -2.6685 42 1 8.9365 4.9358 -2.6174 43 1 4.0016 4.6694 -1.3746 44 1 3.2515 3.1796 -2.0951 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79477_15494190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:54:03 Heat of formation + Delta-G solvation = -200.268968 kcal Electronic energy + Delta-G solvation = -34069.478451 eV Core-core repulsion = 29190.770979 eV Total energy + Delta-G solvation = -4878.707472 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.101 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.22768 -42.45591 -41.91893 -39.44595 -39.36624 -38.59630 -37.82329 -37.59550 -37.45249 -33.04108 -32.80863 -32.01609 -31.43832 -27.30924 -27.08405 -26.80247 -24.71664 -24.00325 -23.12741 -22.72597 -21.66352 -20.76337 -19.84094 -19.16000 -19.03447 -18.70334 -18.22093 -17.92902 -17.56044 -17.30869 -17.15379 -16.86667 -16.65789 -16.57726 -16.13035 -15.88014 -15.55959 -15.26784 -15.09595 -14.81294 -14.63809 -14.46486 -14.37068 -14.22998 -14.15107 -13.82952 -13.64786 -13.53284 -13.49884 -13.38400 -13.29331 -13.24428 -13.03571 -12.91037 -12.60910 -12.49815 -12.46630 -12.23599 -12.01345 -11.74015 -11.66163 -11.60818 -11.45026 -10.60168 -10.16012 -9.98923 -5.19123 -1.35741 -0.04611 0.06346 0.84781 0.94769 1.12074 1.48428 1.55246 1.89354 2.23351 2.40031 2.59437 2.64772 2.73151 2.91971 3.13989 3.26209 3.31177 3.46064 3.54392 3.67241 3.73556 3.87402 3.89538 3.95142 4.00117 4.11276 4.19026 4.22262 4.27247 4.29369 4.30301 4.45134 4.50202 4.55507 4.71777 4.76076 4.76404 4.81204 4.89450 4.96277 5.02428 5.05299 5.19991 5.30717 5.34150 5.74385 6.54824 6.66034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.526 6.526 6 C -0.112 4.112 7 H 0.170 0.830 8 C -0.106 4.106 9 C 0.066 3.934 10 F -0.199 7.199 11 C -0.644 4.644 12 S 2.570 3.430 13 O -0.959 6.959 14 O -0.979 6.979 15 O -0.658 6.658 16 C 0.043 3.957 17 C -0.115 4.115 18 C -0.115 4.115 19 O -0.552 6.552 20 Si 0.807 3.193 21 C -0.106 4.106 22 C -0.086 4.086 23 C -0.093 4.093 24 C -0.132 4.132 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.213 0.787 35 H 0.085 0.915 36 H 0.398 0.602 37 H -0.280 1.280 38 H -0.296 1.296 39 H 0.166 0.834 40 H 0.177 0.823 41 H 0.180 0.820 42 H 0.175 0.825 43 H 0.168 0.832 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.439 4.572 6.430 11.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.415 6.415 6 C -0.130 4.130 7 H 0.187 0.813 8 C -0.144 4.144 9 C 0.047 3.953 10 F -0.180 7.180 11 C -0.773 4.773 12 S 2.671 3.329 13 O -0.957 6.957 14 O -0.977 6.977 15 O -0.618 6.618 16 C 0.002 3.998 17 C -0.118 4.118 18 C -0.223 4.223 19 O -0.361 6.361 20 Si 0.711 3.289 21 C -0.124 4.124 22 C -0.105 4.105 23 C -0.110 4.110 24 C -0.152 4.152 25 C -0.190 4.190 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.196 0.804 34 H 0.230 0.770 35 H 0.102 0.898 36 H 0.248 0.752 37 H -0.207 1.207 38 H -0.224 1.224 39 H 0.183 0.817 40 H 0.194 0.806 41 H 0.197 0.803 42 H 0.193 0.807 43 H 0.185 0.815 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.455 3.470 5.458 9.869 hybrid contribution -1.174 -0.422 0.522 1.352 sum 6.281 3.048 5.979 9.192 Atomic orbital electron populations 1.21829 0.90410 1.04367 1.03846 1.23271 0.97129 0.79277 1.02368 1.86491 1.24070 1.33532 1.83554 1.23804 0.80823 0.92997 0.71710 1.90692 1.61015 1.44108 1.45696 1.22173 0.98552 0.90239 1.02060 0.81288 1.23700 0.92831 1.08057 0.89810 1.22040 0.96871 0.78369 0.98066 1.92980 1.97324 1.40351 1.87299 1.31193 1.10778 1.12415 1.22915 1.06014 0.74370 0.73102 0.79404 1.93603 1.43310 1.74997 1.83787 1.93590 1.82739 1.45655 1.75726 1.85736 1.28772 1.61633 1.85616 1.18431 0.81708 1.01524 0.98131 1.20661 0.97211 0.98329 0.95582 1.25714 1.02258 0.97470 0.96831 1.86530 1.37550 1.38676 1.73307 0.94438 0.85451 0.73846 0.75200 1.21339 0.91156 0.98735 1.01123 1.21924 1.01229 0.95755 0.91574 1.21682 0.94360 0.94987 1.00002 1.21879 0.95050 1.00746 0.97556 1.24068 0.94022 1.05328 0.95584 0.90695 0.91549 0.88458 0.92222 0.90866 0.89226 0.80957 0.80438 0.77021 0.89758 0.75195 1.20697 1.22390 0.81685 0.80576 0.80262 0.80727 0.81472 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 10.29 71.98 0.74 0.87 16 2 C 0.05 0.23 6.19 71.98 0.45 0.68 16 3 O -0.36 -2.37 10.22 -51.38 -0.53 -2.89 16 4 C 0.46 3.29 6.93 71.24 0.49 3.78 16 5 O -0.53 -7.26 14.48 21.97 0.32 -6.94 16 6 C -0.11 0.29 4.45 -11.01 -0.05 0.24 16 7 H 0.17 -1.74 8.14 -2.39 -0.02 -1.76 16 8 C -0.11 0.58 6.93 31.13 0.22 0.79 16 9 C 0.07 0.08 1.56 -10.25 -0.02 0.07 16 10 F -0.20 -2.48 14.84 44.97 0.67 -1.81 16 11 C -0.64 2.64 5.11 71.98 0.37 3.01 16 12 S 2.57 23.62 4.69 -56.49 -0.26 23.35 16 13 O -0.96 -14.84 17.96 -118.57 -2.13 -16.97 16 14 O -0.98 -15.73 13.78 -118.57 -1.63 -17.37 16 15 O -0.66 -5.18 9.48 -61.51 -0.58 -5.76 16 16 C 0.04 0.18 4.78 22.51 0.11 0.28 16 17 C -0.11 -0.53 4.67 -19.77 -0.09 -0.62 16 18 C -0.12 -1.03 2.23 71.24 0.16 -0.87 16 19 O -0.55 -4.32 12.88 -148.98 -1.92 -6.24 16 20 Si 0.81 2.59 29.92 68.60 2.05 4.65 16 21 C -0.11 0.36 8.66 22.26 0.19 0.55 16 22 C -0.09 0.73 10.04 22.28 0.22 0.95 16 23 C -0.09 0.85 10.04 22.25 0.22 1.08 16 24 C -0.13 0.68 8.46 22.37 0.19 0.87 16 25 C -0.15 0.20 6.94 31.14 0.22 0.42 16 26 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 30 H 0.07 0.27 8.13 -2.39 -0.02 0.26 16 31 H 0.09 -0.10 7.43 -2.39 -0.02 -0.12 16 32 H 0.17 -2.74 8.10 -2.39 -0.02 -2.76 16 33 H 0.18 -1.65 6.58 -2.39 -0.02 -1.66 16 34 H 0.21 -3.15 8.05 -2.39 -0.02 -3.17 16 35 H 0.08 1.38 5.43 -2.39 -0.01 1.36 16 36 H 0.40 -1.34 8.70 -74.06 -0.64 -1.98 16 37 H -0.28 -2.27 7.11 99.48 0.71 -1.56 16 38 H -0.30 -3.08 7.11 99.48 0.71 -2.37 16 39 H 0.17 -1.48 5.13 -2.91 -0.01 -1.49 16 40 H 0.18 -2.70 8.06 -2.91 -0.02 -2.72 16 41 H 0.18 -2.94 8.06 -2.91 -0.02 -2.97 16 42 H 0.18 -2.27 7.47 -2.91 -0.02 -2.29 16 43 H 0.17 -1.60 8.04 -2.39 -0.02 -1.62 16 44 H 0.08 0.29 8.10 -2.39 -0.02 0.27 16 Total: 0.00 -42.56 377.73 -0.15 -42.71 By element: Atomic # 1 Polarization: -25.28 SS G_CDS: 0.45 Total: -24.84 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 3.42 Total: 12.11 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -6.47 Total: -56.18 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.67 Total: -1.81 kcal Atomic # 14 Polarization: 2.59 SS G_CDS: 2.05 Total: 4.65 kcal Atomic # 16 Polarization: 23.62 SS G_CDS: -0.26 Total: 23.35 kcal Total: -42.56 -0.15 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79477_15494190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.554 kcal (2) G-P(sol) polarization free energy of solvation -42.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds