Wall clock time and date at job start Tue Mar 9 2021 13:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47033 * 2 1 4 4 C 1.50700 * 109.47156 * 240.00291 * 2 1 3 5 5 C 1.38707 * 120.02680 * 284.37772 * 4 2 1 6 6 O 1.35896 * 120.05747 * 359.74598 * 5 4 2 7 7 S 1.52200 * 113.99988 * 97.23785 * 6 5 4 8 8 O 1.42096 * 104.27808 * 192.83445 * 7 6 5 9 9 O 1.42098 * 104.27629 * 320.69498 * 7 6 5 10 10 C 1.81395 * 104.45021 * 76.76437 * 7 6 5 11 11 H 1.09004 * 112.85220 * 311.19826 * 10 7 6 12 12 C 1.53777 * 113.61542 * 82.50436 * 10 7 6 13 13 C 1.53778 * 87.08360 * 139.98191 * 12 10 7 14 14 H 1.09006 * 113.61544 * 220.01677 * 13 12 10 15 15 O 1.42903 * 113.61701 * 89.11620 * 13 12 10 16 16 C 1.42900 * 113.99986 * 112.50328 * 15 13 12 17 17 C 1.50706 * 109.47071 * 180.02562 * 16 15 13 18 18 C 1.38236 * 120.00126 * 269.73068 * 17 16 15 19 19 C 1.38234 * 119.99681 * 179.76503 * 18 17 16 20 20 C 1.38230 * 120.00302 * 0.48281 * 19 18 17 21 21 C 1.38243 * 119.99792 * 359.78915 * 20 19 18 22 22 C 1.38226 * 120.00215 * 359.95800 * 21 20 19 23 23 C 1.53780 * 87.08300 * 334.56574 * 13 12 10 24 24 C 1.38755 * 119.88978 * 179.72465 * 5 4 2 25 25 C 1.38127 * 119.94586 * 359.97438 * 24 5 4 26 26 C 1.38295 * 120.05027 * 0.02562 * 25 24 5 27 27 C 1.38173 * 120.02964 * 104.10430 * 4 2 1 28 28 H 0.96698 * 113.99830 * 60.00386 * 1 2 3 29 29 H 1.09000 * 109.47334 * 120.00048 * 2 1 3 30 30 H 1.48501 * 109.99984 * 298.68256 * 3 2 1 31 31 H 1.48498 * 109.99802 * 59.99806 * 3 2 1 32 32 H 1.09004 * 113.61567 * 254.53076 * 12 10 7 33 33 H 1.08994 * 113.61765 * 25.43401 * 12 10 7 34 34 H 1.09006 * 109.47237 * 299.99976 * 16 15 13 35 35 H 1.08998 * 109.47042 * 60.00474 * 16 15 13 36 36 H 1.08000 * 119.99536 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.99584 * 180.24578 * 19 18 17 38 38 H 1.07994 * 120.00245 * 179.76415 * 20 19 18 39 39 H 1.08004 * 119.99499 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00429 * 179.97438 * 22 21 20 41 41 H 1.08996 * 113.61536 * 270.89002 * 23 13 12 42 42 H 1.08999 * 113.68992 * 139.98552 * 23 13 12 43 43 H 1.08001 * 120.03416 * 180.02562 * 24 5 4 44 44 H 1.07994 * 119.97579 * 179.97438 * 25 24 5 45 45 H 1.07999 * 119.94056 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.96787 * 0.27057 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.8816 -2.0947 -1.3017 6 8 1.3847 -2.8124 -0.2602 7 16 -0.0741 -3.2141 -0.4252 8 8 -0.4613 -3.6658 0.8652 9 8 -0.6859 -2.0764 -1.0174 10 6 -0.0328 -4.5973 -1.5980 11 1 0.5669 -4.3843 -2.4829 12 6 0.2910 -5.9505 -0.9433 13 6 -0.7677 -6.5652 -1.8739 14 1 -1.3857 -7.3228 -1.3919 15 8 -0.2442 -6.9931 -3.1329 16 6 -0.2616 -8.4099 -3.3184 17 6 0.3103 -8.7464 -4.6715 18 6 -0.5216 -8.8297 -5.7723 19 6 0.0038 -9.1336 -7.0143 20 6 1.3596 -9.3639 -7.1537 21 6 2.1908 -9.2861 -6.0518 22 6 1.6662 -8.9771 -4.8108 23 6 -1.4217 -5.1742 -1.9193 24 6 2.3396 -2.7455 -2.4384 25 6 2.8433 -2.0138 -3.4961 26 6 2.8919 -0.6336 -3.4225 27 6 2.4367 0.0171 -2.2910 28 1 -0.3933 0.4416 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5878 2.4586 -1.2242 31 1 1.5614 2.4679 1.2085 32 1 1.3038 -6.3008 -1.1426 33 1 0.0254 -5.9995 0.1127 34 1 0.3382 -8.8854 -2.5423 35 1 -1.2880 -8.7717 -3.2573 36 1 -1.5816 -8.6540 -5.6626 37 1 -0.6457 -9.1947 -7.8750 38 1 1.7695 -9.6051 -8.1233 39 1 3.2500 -9.4666 -6.1607 40 1 2.3155 -8.9168 -3.9499 41 1 -2.1555 -5.0108 -1.1301 42 1 -1.7922 -4.8965 -2.9061 43 1 2.3016 -3.8233 -2.4965 44 1 3.2003 -2.5198 -4.3808 45 1 3.2865 -0.0632 -4.2504 46 1 2.4756 1.0950 -2.2360 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79477_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:54:08 Heat of formation + Delta-G solvation = -76.570030 kcal Electronic energy + Delta-G solvation = -32860.113711 eV Core-core repulsion = 28390.227974 eV Total energy + Delta-G solvation = -4469.885737 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29313 -40.86822 -40.03218 -39.35219 -38.08840 -37.64544 -37.09820 -36.90789 -32.92044 -32.75642 -31.88898 -31.54968 -27.60854 -27.13462 -26.91736 -26.57271 -24.61340 -23.57542 -23.05434 -22.37186 -21.83682 -20.96548 -19.54131 -19.00414 -18.69154 -18.12319 -17.92364 -17.55132 -17.18799 -16.76224 -16.71770 -16.52535 -16.29085 -15.99388 -15.81133 -15.59518 -15.34631 -15.09956 -14.85873 -14.43164 -14.37422 -14.15266 -14.05204 -13.95857 -13.84687 -13.67556 -13.55060 -13.40279 -13.25701 -13.20653 -12.99518 -12.91122 -12.58424 -12.21732 -12.11546 -12.02330 -11.97864 -11.83787 -11.70026 -11.19218 -10.69182 -10.51000 -10.24064 -9.99724 -9.90268 -9.84799 -4.97423 -0.94985 -0.03211 0.00186 0.24640 0.42155 1.13941 1.23845 1.55158 1.95874 2.30215 2.32465 2.65404 2.77576 2.92293 3.06837 3.28487 3.33919 3.35178 3.50178 3.57449 3.68126 3.77159 3.79602 3.84530 3.96331 4.01155 4.03760 4.08448 4.13195 4.16075 4.20904 4.27967 4.31305 4.45532 4.50311 4.54491 4.64350 4.66378 4.67821 4.69573 4.78983 4.87804 4.94511 4.96803 5.04352 5.08368 5.18070 5.45912 5.53843 5.56408 5.62420 5.98079 6.04938 6.59804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.094 4.094 3 Si 0.697 3.303 4 C -0.089 4.089 5 C 0.097 3.903 6 O -0.661 6.661 7 S 2.599 3.401 8 O -0.924 6.924 9 O -0.928 6.928 10 C -0.648 4.648 11 H 0.157 0.843 12 C -0.131 4.131 13 C 0.078 3.922 14 H 0.089 0.911 15 O -0.356 6.356 16 C 0.101 3.899 17 C -0.095 4.095 18 C -0.098 4.098 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.107 4.107 24 C -0.139 4.139 25 C -0.092 4.092 26 C -0.097 4.097 27 C -0.106 4.106 28 H 0.381 0.619 29 H 0.121 0.879 30 H -0.255 1.255 31 H -0.253 1.253 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.935 -2.019 -5.081 6.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.204 4.204 3 Si 0.597 3.403 4 C -0.092 4.092 5 C 0.056 3.944 6 O -0.620 6.620 7 S 2.693 3.307 8 O -0.923 6.923 9 O -0.926 6.926 10 C -0.754 4.754 11 H 0.175 0.825 12 C -0.169 4.169 13 C 0.019 3.981 14 H 0.107 0.893 15 O -0.275 6.275 16 C 0.025 3.975 17 C -0.095 4.095 18 C -0.116 4.116 19 C -0.141 4.141 20 C -0.130 4.130 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.159 4.159 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.124 4.124 28 H 0.230 0.770 29 H 0.139 0.861 30 H -0.181 1.181 31 H -0.178 1.178 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.724 -0.950 -4.013 5.556 hybrid contribution -0.992 -1.045 -0.802 1.649 sum 2.732 -1.995 -4.816 5.885 Atomic orbital electron populations 1.86673 1.15603 1.80039 1.49132 1.25215 0.85639 1.11687 0.97852 0.95099 0.91173 0.73576 0.80453 1.20434 0.98968 0.92122 0.97657 1.17759 1.02580 0.89374 0.84735 1.85686 1.52612 1.72649 1.51074 1.05524 0.73218 0.75954 0.75983 1.93632 1.78997 1.83376 1.36248 1.93635 1.74646 1.44848 1.79493 1.32370 1.08086 1.16912 1.18080 0.82548 1.23234 1.02474 0.91105 1.00111 1.22833 0.94555 0.95586 0.85162 0.89317 1.87965 1.83382 1.21823 1.34337 1.21451 1.00191 0.81693 0.94177 1.19555 0.93998 1.01566 0.94380 1.21091 0.99830 0.98462 0.92243 1.21202 0.95564 0.99885 0.97430 1.21270 0.93825 0.98974 0.98941 1.21197 1.00091 1.00125 0.92709 1.21077 0.94339 0.98470 0.97801 1.22832 0.91886 0.95019 1.04795 1.21513 1.00460 1.01234 0.92715 1.21134 0.97783 0.94118 0.98018 1.21376 0.97683 0.94623 0.97896 1.21200 0.97934 1.00657 0.92596 0.76980 0.86134 1.18062 1.17766 0.88770 0.86905 0.91963 0.91904 0.85881 0.85722 0.85803 0.85735 0.85930 0.87785 0.88119 0.84022 0.84067 0.84248 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -2.11 10.02 -58.29 -0.58 -2.69 16 2 C -0.09 -0.19 2.38 36.01 0.09 -0.10 16 3 Si 0.70 -0.28 30.28 -169.99 -5.15 -5.42 16 4 C -0.09 -0.14 4.94 -104.47 -0.52 -0.65 16 5 C 0.10 0.20 4.63 -39.22 -0.18 0.02 16 6 O -0.66 -2.19 9.37 -51.74 -0.48 -2.68 16 7 S 2.60 8.97 5.14 -107.50 -0.55 8.41 16 8 O -0.92 -6.02 17.27 -67.04 -1.16 -7.18 16 9 O -0.93 -4.64 13.67 -70.59 -0.97 -5.60 16 10 C -0.65 -0.12 3.88 -25.92 -0.10 -0.22 16 11 H 0.16 -0.16 5.55 -51.93 -0.29 -0.44 16 12 C -0.13 0.08 7.47 -25.92 -0.19 -0.11 16 13 C 0.08 -0.06 4.37 -25.92 -0.11 -0.17 16 14 H 0.09 -0.22 7.87 -51.93 -0.41 -0.63 16 15 O -0.36 -0.23 10.26 -35.23 -0.36 -0.59 16 16 C 0.10 -0.06 5.90 36.01 0.21 0.15 16 17 C -0.09 -0.06 5.51 -104.62 -0.58 -0.64 16 18 C -0.10 -0.05 9.70 -39.58 -0.38 -0.44 16 19 C -0.12 -0.03 10.05 -39.59 -0.40 -0.42 16 20 C -0.11 -0.01 10.05 -39.58 -0.40 -0.41 16 21 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 22 C -0.10 -0.03 9.70 -39.58 -0.38 -0.42 16 23 C -0.11 0.05 7.50 -25.91 -0.19 -0.15 16 24 C -0.14 0.04 8.63 -39.43 -0.34 -0.30 16 25 C -0.09 0.16 10.04 -39.60 -0.40 -0.24 16 26 C -0.10 0.19 10.04 -39.56 -0.40 -0.21 16 27 C -0.11 0.08 8.66 -39.61 -0.34 -0.26 16 28 H 0.38 0.63 8.64 45.56 0.39 1.02 16 29 H 0.12 0.24 7.81 -51.93 -0.41 -0.16 16 30 H -0.26 -0.11 6.66 56.52 0.38 0.26 16 31 H -0.25 -0.73 7.11 56.52 0.40 -0.33 16 32 H 0.09 -0.14 8.14 -51.93 -0.42 -0.57 16 33 H 0.11 -0.09 7.43 -51.93 -0.39 -0.47 16 34 H 0.06 -0.11 8.09 -51.93 -0.42 -0.53 16 35 H 0.06 -0.11 8.08 -51.93 -0.42 -0.53 16 36 H 0.12 -0.10 8.06 -52.49 -0.42 -0.53 16 37 H 0.12 -0.18 8.06 -52.49 -0.42 -0.61 16 38 H 0.12 -0.21 8.06 -52.49 -0.42 -0.63 16 39 H 0.12 -0.21 8.06 -52.48 -0.42 -0.63 16 40 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 41 H 0.10 -0.17 8.10 -51.93 -0.42 -0.59 16 42 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 43 H 0.14 -0.31 6.43 -52.49 -0.34 -0.65 16 44 H 0.14 -0.58 8.06 -52.49 -0.42 -1.00 16 45 H 0.14 -0.62 8.06 -52.49 -0.42 -1.04 16 46 H 0.14 -0.35 4.87 -52.49 -0.26 -0.61 16 LS Contribution 388.84 15.07 5.86 5.86 Total: 0.00 -10.20 388.84 -14.39 -24.59 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -5.98 Total: -9.73 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -5.02 Total: -4.97 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -3.55 Total: -18.74 kcal Atomic # 14 Polarization: -0.28 SS G_CDS: -5.15 Total: -5.42 kcal Atomic # 16 Polarization: 8.97 SS G_CDS: -0.55 Total: 8.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -10.20 -14.39 -24.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79477_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.982 kcal (2) G-P(sol) polarization free energy of solvation -10.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds