Wall clock time and date at job start Tue Mar 9 2021 13:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45199 * 109.47482 * 2 1 4 4 C 1.34228 * 117.00436 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00050 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00108 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47284 * 300.00185 * 6 4 3 8 8 C 1.53002 * 109.46958 * 60.00103 * 6 4 3 9 9 C 1.52997 * 109.46978 * 180.02562 * 8 6 4 10 10 C 1.53006 * 109.47164 * 299.99874 * 9 8 6 11 11 F 1.39900 * 109.46764 * 300.00189 * 10 9 8 12 12 C 1.52992 * 109.47223 * 180.02562 * 10 9 8 13 13 S 1.81400 * 109.47583 * 59.99628 * 12 10 9 14 14 O 1.42098 * 110.54210 * 291.62608 * 13 12 10 15 15 O 1.42102 * 110.53978 * 68.37524 * 13 12 10 16 16 O 1.52197 * 104.45232 * 180.02562 * 13 12 10 17 17 C 1.35897 * 113.99858 * 75.00146 * 16 13 12 18 18 C 1.38708 * 120.05634 * 90.00667 * 17 16 13 19 19 C 1.50696 * 120.02899 * 359.97351 * 18 17 16 20 20 O 1.42896 * 109.47424 * 75.00435 * 19 18 17 21 21 Si 1.86298 * 109.47220 * 195.00671 * 19 18 17 22 22 C 1.38167 * 119.94340 * 180.02562 * 18 17 16 23 23 C 1.38244 * 120.05883 * 359.97438 * 22 18 17 24 24 C 1.38288 * 120.10866 * 0.02687 * 23 22 18 25 25 C 1.38124 * 120.05474 * 359.67474 * 24 23 22 26 26 C 1.52997 * 109.47127 * 59.99836 * 10 9 8 27 27 C 1.52996 * 109.46990 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.47508 * 59.99424 * 1 2 3 29 29 H 1.08999 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47020 * 299.99915 * 1 2 3 31 31 H 1.09006 * 109.47020 * 240.00085 * 2 1 3 32 32 H 1.09001 * 109.47526 * 120.00019 * 2 1 3 33 33 H 1.09002 * 109.47097 * 299.99808 * 8 6 4 34 34 H 1.09001 * 109.47142 * 59.99773 * 8 6 4 35 35 H 1.09001 * 109.47375 * 59.99908 * 9 8 6 36 36 H 1.09000 * 109.47140 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47103 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47066 * 299.99881 * 12 10 9 39 39 H 1.09007 * 109.46935 * 315.00139 * 19 18 17 40 40 H 0.96699 * 114.00635 * 180.02562 * 20 19 18 41 41 H 1.48505 * 110.00227 * 178.67979 * 21 19 18 42 42 H 1.48506 * 109.99858 * 299.99855 * 21 19 18 43 43 H 1.08002 * 119.97282 * 180.02562 * 22 18 17 44 44 H 1.08000 * 119.95148 * 179.97438 * 23 22 18 45 45 H 1.08005 * 119.97281 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.02677 * 180.32494 * 25 24 23 47 47 H 1.09002 * 109.47153 * 180.02562 * 26 10 9 48 48 H 1.09001 * 109.46832 * 60.00321 * 26 10 9 49 49 H 1.09004 * 109.47368 * 60.00232 * 27 6 4 50 50 H 1.09001 * 109.47372 * 300.00388 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4693 -0.8911 8 6 3.4496 3.6847 1.2481 9 6 4.0339 5.0987 1.2471 10 6 5.5619 5.0192 1.2463 11 9 5.9939 4.3368 2.3886 12 6 6.1462 6.4331 1.2460 13 16 5.5876 7.3187 2.7273 14 8 4.1916 7.5751 2.6582 15 8 6.1724 6.7569 3.8942 16 8 6.2276 8.6947 2.6113 17 6 5.6366 9.5034 1.6929 18 6 4.5913 10.3340 2.0690 19 6 4.1092 10.3402 3.4967 20 8 5.0468 11.0446 4.3131 21 14 2.4501 11.1826 3.5883 22 6 3.9918 11.1549 1.1332 23 6 4.4332 11.1494 -0.1769 24 6 5.4751 10.3222 -0.5543 25 6 6.0819 9.5042 0.3787 26 6 6.0330 4.2718 -0.0029 27 6 5.4486 2.8573 -0.0010 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3611 3.7417 1.2484 34 1 3.7859 3.1527 2.1381 35 1 3.6973 5.6304 0.3571 36 1 3.6979 5.6312 2.1369 37 1 7.2347 6.3765 1.2458 38 1 5.8096 6.9652 0.3562 39 1 4.0158 9.3142 3.8531 40 1 4.8004 11.0880 5.2472 41 1 1.9489 11.1670 4.9862 42 1 2.5638 12.5822 3.1050 43 1 3.1781 11.8022 1.4256 44 1 3.9631 11.7915 -0.9070 45 1 5.8180 10.3194 -1.5785 46 1 6.8990 8.8622 0.0845 47 1 7.1215 4.2148 -0.0032 48 1 5.6964 4.8035 -0.8929 49 1 5.7846 2.3247 -0.8908 50 1 5.7845 2.3255 0.8892 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79477_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:54:15 Heat of formation + Delta-G solvation = -234.950742 kcal Electronic energy + Delta-G solvation = -38567.919456 eV Core-core repulsion = 33376.632832 eV Total energy + Delta-G solvation = -5191.286624 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.06691 -42.44244 -41.66254 -39.45669 -39.14436 -38.33452 -37.81170 -37.51650 -37.22355 -34.30455 -33.10921 -32.65824 -32.18597 -31.63876 -29.16706 -27.06521 -25.21674 -24.67957 -24.21992 -23.52420 -23.10110 -21.96027 -21.51884 -20.92757 -19.67478 -19.04762 -18.75324 -18.60895 -18.47575 -17.78885 -17.62287 -17.43511 -17.12762 -17.02842 -16.82726 -16.36733 -16.16229 -15.89016 -15.38420 -15.29064 -15.21564 -14.99579 -14.89384 -14.55899 -14.40638 -14.22043 -14.10204 -13.96611 -13.84914 -13.82249 -13.59472 -13.47838 -13.33410 -13.28314 -13.20559 -13.17311 -13.06020 -12.97133 -12.87483 -12.65139 -12.50292 -12.30182 -12.11527 -11.95820 -11.82253 -11.77054 -11.49775 -11.30265 -11.16505 -10.50312 -10.31310 -10.09161 -4.98794 -1.22010 -0.13118 -0.10247 0.91398 1.20234 1.20697 1.53492 1.62500 1.85915 2.19815 2.32537 2.65811 2.76599 2.98981 3.12782 3.20620 3.27070 3.41951 3.46842 3.53000 3.57589 3.68423 3.75589 3.81721 3.91472 3.94228 3.96326 3.99038 3.99619 4.02659 4.04185 4.11535 4.16566 4.28641 4.29601 4.43023 4.50253 4.60260 4.63789 4.70657 4.71784 4.77101 4.80564 4.84293 4.86100 4.89681 5.00186 5.02368 5.02887 5.10736 5.15046 5.48690 5.53009 6.39566 6.76393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.466 3.534 5 O -0.504 6.504 6 C -0.082 4.082 7 H 0.115 0.885 8 C -0.112 4.112 9 C -0.169 4.169 10 C 0.136 3.864 11 F -0.190 7.190 12 C -0.687 4.687 13 S 2.591 3.409 14 O -0.940 6.940 15 O -0.907 6.907 16 O -0.653 6.653 17 C 0.082 3.918 18 C -0.036 4.036 19 C -0.101 4.101 20 O -0.531 6.531 21 Si 0.702 3.298 22 C -0.102 4.102 23 C -0.092 4.092 24 C -0.097 4.097 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.110 4.110 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.087 0.913 40 H 0.383 0.617 41 H -0.255 1.255 42 H -0.250 1.250 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 2.375 -7.463 9.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.101 4.101 7 H 0.132 0.868 8 C -0.149 4.149 9 C -0.206 4.206 10 C 0.117 3.883 11 F -0.170 7.170 12 C -0.812 4.812 13 S 2.685 3.315 14 O -0.938 6.938 15 O -0.906 6.906 16 O -0.612 6.612 17 C 0.041 3.959 18 C -0.038 4.038 19 C -0.209 4.209 20 O -0.339 6.339 21 Si 0.602 3.398 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.152 4.152 26 C -0.166 4.166 27 C -0.148 4.148 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.105 0.895 40 H 0.231 0.769 41 H -0.180 1.180 42 H -0.175 1.175 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.162 0.838 46 H 0.161 0.839 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.562 2.909 -6.896 8.765 hybrid contribution 1.424 -0.514 0.580 1.621 sum -3.138 2.395 -6.316 7.448 Atomic orbital electron populations 1.21820 0.92292 1.03265 1.03677 1.23086 0.95613 0.79828 1.02761 1.86496 1.24294 1.32772 1.83776 1.23613 0.80752 0.92440 0.72321 1.90695 1.60466 1.43071 1.44845 1.21170 0.96621 0.90201 1.02109 0.86759 1.21507 1.02428 0.94114 0.96874 1.22662 0.91741 0.99421 1.06797 1.20501 0.95023 0.87417 0.85384 1.92986 1.91154 1.81152 1.51721 1.31576 1.14507 1.09580 1.25568 1.05782 0.74836 0.74146 0.76735 1.93626 1.32132 1.81188 1.86863 1.93698 1.78057 1.76121 1.42685 1.85748 1.70086 1.42768 1.62554 1.17889 0.95161 0.96732 0.86154 1.19395 0.94270 0.95166 0.94997 1.25091 1.03844 1.02479 0.89510 1.86590 1.47004 1.77317 1.22969 0.94628 0.78787 0.81155 0.85195 1.21168 1.00093 0.97616 0.93064 1.21408 0.96036 0.97729 0.95896 1.21152 0.95572 0.94968 0.99776 1.21406 1.00789 1.02048 0.90998 1.22106 1.02567 0.95878 0.96089 1.21498 0.91716 0.96379 1.05166 0.91364 0.90034 0.91307 0.91128 0.91077 0.88779 0.90152 0.87892 0.88197 0.82896 0.82641 0.89548 0.76876 1.17975 1.17463 0.83841 0.83972 0.83828 0.83934 0.89290 0.89061 0.89668 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.28 10.29 37.15 0.38 0.66 16 2 C 0.06 0.01 6.19 37.15 0.23 0.24 16 3 O -0.36 -0.46 10.12 -39.25 -0.40 -0.85 16 4 C 0.47 0.85 7.26 36.01 0.26 1.11 16 5 O -0.50 -2.45 15.73 -18.75 -0.29 -2.75 16 6 C -0.08 0.09 2.63 -91.77 -0.24 -0.15 16 7 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 8 C -0.11 0.12 5.01 -26.73 -0.13 -0.01 16 9 C -0.17 0.26 4.52 -26.73 -0.12 0.14 16 10 C 0.14 -0.10 0.88 -90.62 -0.08 -0.18 16 11 F -0.19 -0.51 15.04 2.25 0.03 -0.48 16 12 C -0.69 1.42 4.76 37.15 0.18 1.60 16 13 S 2.59 5.54 4.28 -107.50 -0.46 5.08 16 14 O -0.94 -1.88 11.85 -67.04 -0.79 -2.68 16 15 O -0.91 -5.77 17.60 -67.03 -1.18 -6.95 16 16 O -0.65 -1.78 9.48 -51.74 -0.49 -2.27 16 17 C 0.08 0.11 4.78 -39.22 -0.19 -0.07 16 18 C -0.04 -0.06 4.71 -104.48 -0.49 -0.55 16 19 C -0.10 -0.21 2.23 36.00 0.08 -0.13 16 20 O -0.53 -1.58 12.86 -35.23 -0.45 -2.03 16 21 Si 0.70 -0.23 30.20 -169.99 -5.13 -5.36 16 22 C -0.10 0.09 8.66 -39.61 -0.34 -0.26 16 23 C -0.09 0.27 10.04 -39.56 -0.40 -0.13 16 24 C -0.10 0.32 10.04 -39.60 -0.40 -0.08 16 25 C -0.13 0.25 8.47 -39.43 -0.33 -0.08 16 26 C -0.13 0.33 5.00 -26.71 -0.13 0.19 16 27 C -0.11 0.09 4.37 -26.71 -0.12 -0.03 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 30 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 31 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 32 H 0.07 0.03 8.13 -51.93 -0.42 -0.39 16 33 H 0.09 -0.19 8.11 -51.93 -0.42 -0.61 16 34 H 0.08 0.02 7.80 -51.93 -0.41 -0.39 16 35 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 36 H 0.10 -0.06 5.46 -51.93 -0.28 -0.34 16 37 H 0.15 -0.57 8.14 -51.92 -0.42 -0.99 16 38 H 0.16 -0.86 6.63 -51.92 -0.34 -1.21 16 39 H 0.09 0.20 5.43 -51.93 -0.28 -0.08 16 40 H 0.38 -0.41 8.74 45.56 0.40 -0.01 16 41 H -0.26 -0.40 7.11 56.52 0.40 0.01 16 42 H -0.25 -0.25 6.75 56.52 0.38 0.13 16 43 H 0.14 -0.33 4.90 -52.49 -0.26 -0.59 16 44 H 0.14 -0.79 8.06 -52.49 -0.42 -1.21 16 45 H 0.14 -0.88 8.06 -52.48 -0.42 -1.30 16 46 H 0.14 -0.68 7.53 -52.49 -0.40 -1.08 16 47 H 0.09 -0.26 8.14 -51.93 -0.42 -0.69 16 48 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 49 H 0.08 -0.08 8.10 -51.93 -0.42 -0.50 16 50 H 0.08 0.10 7.76 -51.93 -0.40 -0.31 16 LS Contribution 408.82 15.07 6.16 6.16 Total: 0.00 -12.19 408.82 -11.96 -24.15 By element: Atomic # 1 Polarization: -7.18 SS G_CDS: -7.10 Total: -14.28 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.85 Total: 2.27 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -3.61 Total: -17.54 kcal Atomic # 9 Polarization: -0.51 SS G_CDS: 0.03 Total: -0.48 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: -5.13 Total: -5.36 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -0.46 Total: 5.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -12.19 -11.96 -24.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79477_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.803 kcal (2) G-P(sol) polarization free energy of solvation -12.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds