Wall clock time and date at job start Tue Mar 9 2021 13:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45199 * 109.47482 * 2 1 4 4 C 1.34228 * 117.00436 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00050 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00108 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47284 * 300.00185 * 6 4 3 8 8 C 1.53002 * 109.46958 * 60.00103 * 6 4 3 9 9 C 1.52997 * 109.46978 * 180.02562 * 8 6 4 10 10 C 1.53006 * 109.47164 * 299.99874 * 9 8 6 11 11 F 1.39900 * 109.46764 * 300.00189 * 10 9 8 12 12 C 1.52992 * 109.47223 * 180.02562 * 10 9 8 13 13 S 1.81400 * 109.47583 * 59.99628 * 12 10 9 14 14 O 1.42098 * 110.54210 * 291.62608 * 13 12 10 15 15 O 1.42102 * 110.53978 * 68.37524 * 13 12 10 16 16 O 1.52197 * 104.45232 * 180.02562 * 13 12 10 17 17 C 1.35897 * 113.99858 * 75.00146 * 16 13 12 18 18 C 1.38708 * 120.05634 * 90.00667 * 17 16 13 19 19 C 1.50696 * 120.02899 * 359.97351 * 18 17 16 20 20 O 1.42896 * 109.47424 * 75.00435 * 19 18 17 21 21 Si 1.86298 * 109.47220 * 195.00671 * 19 18 17 22 22 C 1.38167 * 119.94340 * 180.02562 * 18 17 16 23 23 C 1.38244 * 120.05883 * 359.97438 * 22 18 17 24 24 C 1.38288 * 120.10866 * 0.02687 * 23 22 18 25 25 C 1.38124 * 120.05474 * 359.67474 * 24 23 22 26 26 C 1.52997 * 109.47127 * 59.99836 * 10 9 8 27 27 C 1.52996 * 109.46990 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.47508 * 59.99424 * 1 2 3 29 29 H 1.08999 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47020 * 299.99915 * 1 2 3 31 31 H 1.09006 * 109.47020 * 240.00085 * 2 1 3 32 32 H 1.09001 * 109.47526 * 120.00019 * 2 1 3 33 33 H 1.09002 * 109.47097 * 299.99808 * 8 6 4 34 34 H 1.09001 * 109.47142 * 59.99773 * 8 6 4 35 35 H 1.09001 * 109.47375 * 59.99908 * 9 8 6 36 36 H 1.09000 * 109.47140 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47103 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47066 * 299.99881 * 12 10 9 39 39 H 1.09007 * 109.46935 * 315.00139 * 19 18 17 40 40 H 0.96699 * 114.00635 * 180.02562 * 20 19 18 41 41 H 1.48505 * 110.00227 * 178.67979 * 21 19 18 42 42 H 1.48506 * 109.99858 * 299.99855 * 21 19 18 43 43 H 1.08002 * 119.97282 * 180.02562 * 22 18 17 44 44 H 1.08000 * 119.95148 * 179.97438 * 23 22 18 45 45 H 1.08005 * 119.97281 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.02677 * 180.32494 * 25 24 23 47 47 H 1.09002 * 109.47153 * 180.02562 * 26 10 9 48 48 H 1.09001 * 109.46832 * 60.00321 * 26 10 9 49 49 H 1.09004 * 109.47368 * 60.00232 * 27 6 4 50 50 H 1.09001 * 109.47372 * 300.00388 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4693 -0.8911 8 6 3.4496 3.6847 1.2481 9 6 4.0339 5.0987 1.2471 10 6 5.5619 5.0192 1.2463 11 9 5.9939 4.3368 2.3886 12 6 6.1462 6.4331 1.2460 13 16 5.5876 7.3187 2.7273 14 8 4.1916 7.5751 2.6582 15 8 6.1724 6.7569 3.8942 16 8 6.2276 8.6947 2.6113 17 6 5.6366 9.5034 1.6929 18 6 4.5913 10.3340 2.0690 19 6 4.1092 10.3402 3.4967 20 8 5.0468 11.0446 4.3131 21 14 2.4501 11.1826 3.5883 22 6 3.9918 11.1549 1.1332 23 6 4.4332 11.1494 -0.1769 24 6 5.4751 10.3222 -0.5543 25 6 6.0819 9.5042 0.3787 26 6 6.0330 4.2718 -0.0029 27 6 5.4486 2.8573 -0.0010 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3611 3.7417 1.2484 34 1 3.7859 3.1527 2.1381 35 1 3.6973 5.6304 0.3571 36 1 3.6979 5.6312 2.1369 37 1 7.2347 6.3765 1.2458 38 1 5.8096 6.9652 0.3562 39 1 4.0158 9.3142 3.8531 40 1 4.8004 11.0880 5.2472 41 1 1.9489 11.1670 4.9862 42 1 2.5638 12.5822 3.1050 43 1 3.1781 11.8022 1.4256 44 1 3.9631 11.7915 -0.9070 45 1 5.8180 10.3194 -1.5785 46 1 6.8990 8.8622 0.0845 47 1 7.1215 4.2148 -0.0032 48 1 5.6964 4.8035 -0.8929 49 1 5.7846 2.3247 -0.8908 50 1 5.7845 2.3255 0.8892 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79477_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:54:14 Heat of formation + Delta-G solvation = -236.700704 kcal Electronic energy + Delta-G solvation = -38567.995340 eV Core-core repulsion = 33376.632832 eV Total energy + Delta-G solvation = -5191.362508 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.09788 -42.38595 -41.76699 -39.35914 -39.07723 -38.46714 -37.89675 -37.65924 -37.36163 -34.23685 -32.97276 -32.59391 -32.04667 -31.45800 -29.06504 -27.01511 -25.18183 -24.54950 -24.08851 -23.48447 -23.01229 -21.96111 -21.45038 -20.83985 -19.69277 -19.07543 -18.81513 -18.66613 -18.56471 -17.80251 -17.68617 -17.30129 -17.12076 -16.97059 -16.76299 -16.34564 -16.12940 -15.88110 -15.32297 -15.25671 -15.10935 -14.97146 -14.83995 -14.50700 -14.37753 -14.20407 -14.06869 -14.02276 -13.80505 -13.71079 -13.52957 -13.44364 -13.36880 -13.24374 -13.16808 -13.13104 -13.04512 -12.90118 -12.77682 -12.58701 -12.45562 -12.15247 -12.06109 -11.90218 -11.82552 -11.70041 -11.54815 -11.33246 -11.09038 -10.58446 -10.12342 -9.93301 -4.98844 -1.23013 0.00475 0.10026 0.92087 1.08676 1.18730 1.52084 1.61812 1.82090 2.32657 2.41172 2.71468 2.83604 3.13519 3.20352 3.32626 3.40633 3.54799 3.57850 3.70037 3.73551 3.80307 3.86159 3.97040 4.03673 4.04336 4.06134 4.09527 4.16774 4.19259 4.30445 4.31851 4.32106 4.34107 4.36235 4.56545 4.67074 4.80140 4.81207 4.83020 4.90160 4.92400 4.96951 4.97416 5.03267 5.08399 5.11949 5.14597 5.26101 5.26769 5.35667 5.44468 5.78486 6.39780 6.65087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.076 4.076 7 H 0.152 0.848 8 C -0.111 4.111 9 C -0.172 4.172 10 C 0.120 3.880 11 F -0.218 7.218 12 C -0.664 4.664 13 S 2.579 3.421 14 O -0.949 6.949 15 O -0.972 6.972 16 O -0.668 6.668 17 C 0.047 3.953 18 C -0.069 4.069 19 C -0.128 4.128 20 O -0.556 6.556 21 Si 0.785 3.215 22 C -0.115 4.115 23 C -0.086 4.086 24 C -0.088 4.088 25 C -0.131 4.131 26 C -0.121 4.121 27 C -0.111 4.111 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.174 0.826 38 H 0.201 0.799 39 H 0.072 0.928 40 H 0.393 0.607 41 H -0.288 1.288 42 H -0.263 1.263 43 H 0.151 0.849 44 H 0.173 0.827 45 H 0.182 0.818 46 H 0.173 0.827 47 H 0.095 0.905 48 H 0.132 0.868 49 H 0.087 0.913 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 3.814 -11.709 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.308 3.692 5 O -0.432 6.432 6 C -0.094 4.094 7 H 0.169 0.831 8 C -0.148 4.148 9 C -0.210 4.210 10 C 0.101 3.899 11 F -0.199 7.199 12 C -0.793 4.793 13 S 2.679 3.321 14 O -0.948 6.948 15 O -0.970 6.970 16 O -0.628 6.628 17 C 0.006 3.994 18 C -0.071 4.071 19 C -0.234 4.234 20 O -0.365 6.365 21 Si 0.686 3.314 22 C -0.132 4.132 23 C -0.104 4.104 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.159 4.159 27 C -0.149 4.149 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.102 0.898 37 H 0.191 0.809 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.242 0.758 41 H -0.214 1.214 42 H -0.189 1.189 43 H 0.169 0.831 44 H 0.191 0.809 45 H 0.199 0.801 46 H 0.191 0.809 47 H 0.114 0.886 48 H 0.150 0.850 49 H 0.106 0.894 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.014 4.361 -11.096 12.934 hybrid contribution 1.569 -0.973 1.851 2.615 sum -3.445 3.388 -9.245 10.431 Atomic orbital electron populations 1.21819 0.90549 1.04209 1.03876 1.23239 0.97010 0.79475 1.02302 1.86508 1.24139 1.33294 1.83437 1.24309 0.80609 0.93312 0.71002 1.90676 1.61209 1.44552 1.46765 1.21292 0.96248 0.88504 1.03392 0.83071 1.21479 1.03021 0.94394 0.95944 1.22768 0.91282 0.98974 1.07928 1.20945 0.95697 0.87951 0.85301 1.92942 1.91470 1.81886 1.53572 1.31415 1.15799 1.08162 1.23902 1.05843 0.74565 0.74142 0.77558 1.93594 1.32516 1.81302 1.87359 1.93617 1.78971 1.77365 1.47042 1.85720 1.70099 1.43173 1.63790 1.18387 0.96206 0.97440 0.87343 1.19619 0.95714 0.96903 0.94875 1.25559 1.05457 1.02089 0.90320 1.86540 1.48445 1.77518 1.24031 0.93703 0.76235 0.78829 0.82597 1.21371 1.00463 0.97536 0.93846 1.21852 0.95741 0.97507 0.95320 1.21650 0.94462 0.93355 1.01053 1.21839 1.01197 1.02535 0.89540 1.22167 1.02950 0.94490 0.96328 1.21482 0.92052 0.97585 1.03772 0.90865 0.88748 0.91315 0.91275 0.91959 0.87825 0.92761 0.84077 0.89770 0.80859 0.78172 0.91059 0.75750 1.21447 1.18934 0.83143 0.80918 0.80088 0.80936 0.88636 0.84966 0.89396 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.55 10.29 71.98 0.74 1.30 16 2 C 0.05 0.06 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.05 10.12 -51.40 -0.52 -1.57 16 4 C 0.46 1.99 7.26 71.24 0.52 2.51 16 5 O -0.54 -6.20 15.73 21.96 0.35 -5.85 16 6 C -0.08 0.23 2.63 -11.54 -0.03 0.20 16 7 H 0.15 -1.56 8.14 -2.39 -0.02 -1.58 16 8 C -0.11 0.22 5.01 30.59 0.15 0.37 16 9 C -0.17 0.68 4.52 30.60 0.14 0.82 16 10 C 0.12 -0.28 0.88 -10.79 -0.01 -0.29 16 11 F -0.22 -1.60 15.04 44.97 0.68 -0.92 16 12 C -0.66 3.85 4.76 71.98 0.34 4.19 16 13 S 2.58 15.11 4.28 -56.49 -0.24 14.87 16 14 O -0.95 -5.48 11.85 -118.57 -1.41 -6.88 16 15 O -0.97 -16.09 17.60 -118.57 -2.09 -18.18 16 16 O -0.67 -4.67 9.48 -61.48 -0.58 -5.25 16 17 C 0.05 0.13 4.78 22.51 0.11 0.23 16 18 C -0.07 -0.26 4.71 -19.77 -0.09 -0.36 16 19 C -0.13 -0.81 2.23 71.23 0.16 -0.65 16 20 O -0.56 -4.92 12.86 -148.98 -1.92 -6.84 16 21 Si 0.78 0.38 30.20 68.60 2.07 2.45 16 22 C -0.11 0.30 8.66 22.25 0.19 0.49 16 23 C -0.09 0.76 10.04 22.28 0.22 0.99 16 24 C -0.09 0.94 10.04 22.25 0.22 1.17 16 25 C -0.13 0.87 8.47 22.37 0.19 1.05 16 26 C -0.12 0.92 5.00 30.61 0.15 1.07 16 27 C -0.11 0.22 4.37 30.61 0.13 0.35 16 28 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 31 H 0.07 0.09 8.13 -2.38 -0.02 0.07 16 32 H 0.06 0.16 8.13 -2.39 -0.02 0.15 16 33 H 0.10 -0.44 8.11 -2.39 -0.02 -0.46 16 34 H 0.05 0.17 7.80 -2.39 -0.02 0.15 16 35 H 0.14 -1.69 8.14 -2.39 -0.02 -1.71 16 36 H 0.08 -0.02 5.46 -2.39 -0.01 -0.03 16 37 H 0.17 -1.65 8.14 -2.39 -0.02 -1.67 16 38 H 0.20 -3.09 6.63 -2.39 -0.02 -3.11 16 39 H 0.07 0.58 5.43 -2.38 -0.01 0.57 16 40 H 0.39 0.51 8.74 -74.06 -0.65 -0.14 16 41 H -0.29 -1.49 7.11 99.48 0.71 -0.78 16 42 H -0.26 -0.61 6.75 99.48 0.67 0.06 16 43 H 0.15 -0.79 4.90 -2.91 -0.01 -0.81 16 44 H 0.17 -2.66 8.06 -2.91 -0.02 -2.68 16 45 H 0.18 -3.30 8.06 -2.91 -0.02 -3.32 16 46 H 0.17 -2.36 7.53 -2.91 -0.02 -2.39 16 47 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 48 H 0.13 -2.04 8.14 -2.39 -0.02 -2.06 16 49 H 0.09 -0.22 8.10 -2.39 -0.02 -0.24 16 50 H 0.05 0.23 7.76 -2.39 -0.02 0.21 16 Total: 0.00 -36.28 408.82 0.26 -36.02 By element: Atomic # 1 Polarization: -22.14 SS G_CDS: 0.34 Total: -21.80 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 3.59 Total: 13.96 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -6.17 Total: -44.57 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.68 Total: -0.92 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: 2.07 Total: 2.45 kcal Atomic # 16 Polarization: 15.11 SS G_CDS: -0.24 Total: 14.87 kcal Total: -36.28 0.26 -36.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79477_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.685 kcal (2) G-P(sol) polarization free energy of solvation -36.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds