Wall clock time and date at job start Tue Mar 9 2021 13:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47358 * 2 1 4 4 C 1.50700 * 109.47342 * 120.00275 * 2 1 3 5 5 C 1.40409 * 120.18887 * 304.31563 * 4 2 1 6 6 C 1.40591 * 121.24447 * 359.95421 * 5 4 2 7 7 C 1.36085 * 119.65735 * 180.02562 * 6 5 4 8 8 C 1.39390 * 120.98615 * 0.28345 * 7 6 5 9 9 C 1.36095 * 120.99755 * 359.42269 * 8 7 6 10 10 C 1.40533 * 119.66875 * 0.56687 * 9 8 7 11 11 C 1.40552 * 121.21807 * 179.72189 * 10 9 8 12 12 C 1.36016 * 119.72947 * 180.02562 * 11 10 9 13 13 C 1.36612 * 120.18704 * 124.28937 * 4 2 1 14 14 O 1.35883 * 119.56921 * 0.02562 * 13 4 2 15 15 S 1.52193 * 114.00098 * 95.52686 * 14 13 4 16 16 O 1.42103 * 104.27636 * 191.87531 * 15 14 13 17 17 O 1.42104 * 104.27766 * 319.72876 * 15 14 13 18 18 C 1.81397 * 104.45033 * 75.80241 * 15 14 13 19 19 H 1.09003 * 112.84605 * 311.19171 * 18 15 14 20 20 C 1.53776 * 113.61618 * 82.50491 * 18 15 14 21 21 C 1.53783 * 87.08099 * 139.98142 * 20 18 15 22 22 H 1.08995 * 113.60924 * 220.01400 * 21 20 18 23 23 O 1.42902 * 113.68940 * 89.13079 * 21 20 18 24 24 C 1.42899 * 114.00050 * 112.46255 * 23 21 20 25 25 C 1.50701 * 109.46828 * 179.97438 * 24 23 21 26 26 C 1.38237 * 120.00285 * 269.72662 * 25 24 23 27 27 C 1.38233 * 120.00012 * 179.78966 * 26 25 24 28 28 C 1.38229 * 120.00006 * 0.46107 * 27 26 25 29 29 C 1.38241 * 120.00153 * 359.77085 * 28 27 26 30 30 C 1.38231 * 119.99851 * 0.02562 * 29 28 27 31 31 C 1.53774 * 87.08104 * 334.56673 * 21 20 18 32 32 H 0.96699 * 113.99956 * 174.94208 * 1 2 3 33 33 H 1.09008 * 109.46653 * 239.99902 * 2 1 3 34 34 H 1.48498 * 109.99762 * 64.63444 * 3 2 1 35 35 H 1.48503 * 110.00227 * 185.95193 * 3 2 1 36 36 H 1.07992 * 120.17240 * 0.02562 * 6 5 4 37 37 H 1.07999 * 119.50704 * 179.97438 * 7 6 5 38 38 H 1.08002 * 119.49879 * 179.72050 * 8 7 6 39 39 H 1.07999 * 120.16572 * 180.28117 * 9 8 7 40 40 H 1.07997 * 120.13624 * 0.02562 * 11 10 9 41 41 H 1.08004 * 119.53603 * 179.97438 * 12 11 10 42 42 H 1.09007 * 113.61267 * 254.52913 * 20 18 15 43 43 H 1.09001 * 113.61592 * 25.42931 * 20 18 15 44 44 H 1.08992 * 109.47074 * 299.99132 * 24 23 21 45 45 H 1.09000 * 109.46992 * 59.99896 * 24 23 21 46 46 H 1.07997 * 119.99741 * 0.02562 * 26 25 24 47 47 H 1.08008 * 120.00065 * 180.25307 * 27 26 25 48 48 H 1.08007 * 120.00105 * 179.79265 * 28 27 26 49 49 H 1.07999 * 120.00072 * 179.97438 * 29 28 27 50 50 H 1.07994 * 119.99989 * 179.97438 * 30 29 28 51 51 H 1.09001 * 113.61237 * 270.88721 * 31 21 20 52 52 H 1.08999 * 113.69021 * 139.99561 * 31 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.5217 -0.2893 2.5056 6 6 0.6421 0.7954 2.6677 7 6 0.2665 1.1766 3.9189 8 6 0.7456 0.5111 5.0461 9 6 1.5937 -0.5467 4.9277 10 6 2.0042 -0.9698 3.6520 11 6 2.8837 -2.0545 3.4923 12 6 3.2617 -2.4381 2.2433 13 6 2.7876 -1.7683 1.1113 14 8 3.1834 -2.1750 -0.1233 15 16 4.5160 -1.5910 -0.5698 16 8 4.5917 -1.9080 -1.9530 17 8 4.4722 -0.2408 -0.1290 18 6 5.7565 -2.5264 0.3664 19 1 5.5279 -2.5853 1.4306 20 6 6.1115 -3.8827 -0.2654 21 6 7.5716 -3.5907 0.1188 22 1 8.2915 -3.8881 -0.6437 23 8 7.9248 -4.0511 1.4248 24 6 8.8661 -5.1262 1.4273 25 6 9.1650 -5.5287 2.8484 26 6 10.2060 -4.9291 3.5323 27 6 10.4774 -5.2952 4.8373 28 6 9.7139 -6.2678 5.4553 29 6 8.6759 -6.8709 4.7699 30 6 8.4018 -6.5018 3.4663 31 6 7.2036 -2.0985 0.0702 32 1 -0.3933 -0.8800 -0.0779 33 1 1.7923 -0.5139 -0.8901 34 1 1.6558 2.4345 1.2609 35 1 3.5280 1.7726 -0.1447 36 1 0.2664 1.3233 1.8038 37 1 -0.4090 2.0105 4.0406 38 1 0.4353 0.8367 6.0279 39 1 1.9532 -1.0555 5.8099 40 1 3.2578 -2.5812 4.3577 41 1 3.9379 -3.2718 2.1241 42 1 5.6834 -4.7354 0.2618 43 1 5.9423 -3.9207 -1.3415 44 1 8.4478 -5.9765 0.8889 45 1 9.7864 -4.8045 0.9399 46 1 10.8048 -4.1718 3.0482 47 1 11.2882 -4.8238 5.3730 48 1 9.9281 -6.5562 6.4739 49 1 8.0797 -7.6310 5.2526 50 1 7.5912 -6.9732 2.9307 51 1 7.3330 -1.6488 -0.9143 52 1 7.6567 -1.5094 0.8675 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79478_15608174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:56:00 Heat of formation + Delta-G solvation = -50.752976 kcal Electronic energy + Delta-G solvation = -39915.484483 eV Core-core repulsion = 34906.502217 eV Total energy + Delta-G solvation = -5008.982266 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.127 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.81165 -40.89430 -40.81618 -39.99304 -38.58214 -38.12988 -37.49409 -37.16239 -36.89926 -34.05428 -32.72936 -31.84186 -31.34467 -30.78586 -27.61041 -27.24927 -27.03496 -26.55654 -24.90013 -24.50354 -23.53274 -22.33892 -22.32182 -22.21601 -21.08464 -19.96257 -19.59217 -19.07063 -18.74142 -18.26700 -17.86504 -17.57137 -17.37627 -16.96414 -16.71202 -16.55430 -16.37748 -16.27983 -15.98543 -15.79464 -15.64080 -15.33556 -15.00155 -14.74530 -14.57572 -14.45502 -14.37767 -14.31564 -14.16058 -14.07810 -13.94481 -13.87389 -13.70082 -13.65928 -13.50002 -13.41025 -13.36523 -13.21202 -12.53825 -12.48282 -12.30810 -12.18740 -12.11962 -11.98364 -11.91695 -11.78172 -11.60564 -11.25822 -11.12773 -10.99524 -10.63669 -9.87692 -9.87139 -9.81953 -9.09232 -5.00355 -1.30219 -0.74170 -0.35054 0.27533 0.44654 0.68641 0.82139 1.22257 1.58643 1.67051 1.97921 2.30912 2.36457 2.57801 2.78333 2.86754 2.94159 3.11170 3.18801 3.38726 3.40575 3.47912 3.58501 3.68967 3.73609 3.76111 3.86735 3.88983 3.91678 4.06296 4.10088 4.13909 4.16828 4.23257 4.25048 4.30875 4.34441 4.37212 4.41388 4.53069 4.56358 4.61670 4.66791 4.68091 4.71401 4.75204 4.76802 4.80514 4.85946 4.98221 5.03270 5.05893 5.10253 5.37507 5.41795 5.48948 5.50043 5.57467 5.59745 5.81427 6.03802 6.12578 6.43898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.091 4.091 3 Si 0.770 3.230 4 C -0.092 4.092 5 C -0.052 4.052 6 C -0.121 4.121 7 C -0.114 4.114 8 C -0.107 4.107 9 C -0.108 4.108 10 C -0.065 4.065 11 C -0.063 4.063 12 C -0.153 4.153 13 C 0.063 3.937 14 O -0.665 6.665 15 S 2.572 3.428 16 O -0.953 6.953 17 O -0.966 6.966 18 C -0.623 4.623 19 H 0.170 0.830 20 C -0.132 4.132 21 C 0.081 3.919 22 H 0.111 0.889 23 O -0.371 6.371 24 C 0.099 3.901 25 C -0.107 4.107 26 C -0.112 4.112 27 C -0.135 4.135 28 C -0.124 4.124 29 C -0.134 4.134 30 C -0.110 4.110 31 C -0.116 4.116 32 H 0.379 0.621 33 H 0.065 0.935 34 H -0.251 1.251 35 H -0.239 1.239 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.180 0.820 41 H 0.168 0.832 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.134 0.866 51 H 0.115 0.885 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -3.298 4.745 6.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.199 4.199 3 Si 0.668 3.332 4 C -0.096 4.096 5 C -0.053 4.053 6 C -0.139 4.139 7 C -0.132 4.132 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.065 4.065 11 C -0.080 4.080 12 C -0.172 4.172 13 C 0.022 3.978 14 O -0.624 6.624 15 S 2.672 3.328 16 O -0.951 6.951 17 O -0.964 6.964 18 C -0.733 4.733 19 H 0.188 0.812 20 C -0.171 4.171 21 C 0.022 3.978 22 H 0.129 0.871 23 O -0.290 6.290 24 C 0.023 3.977 25 C -0.107 4.107 26 C -0.130 4.130 27 C -0.153 4.153 28 C -0.142 4.142 29 C -0.152 4.152 30 C -0.128 4.128 31 C -0.155 4.155 32 H 0.228 0.772 33 H 0.083 0.917 34 H -0.176 1.176 35 H -0.164 1.164 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.174 0.826 39 H 0.182 0.818 40 H 0.197 0.803 41 H 0.185 0.815 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.156 0.844 50 H 0.152 0.848 51 H 0.133 0.867 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.156 -1.682 4.732 5.465 hybrid contribution 0.333 -2.124 0.299 2.171 sum 2.489 -3.806 5.031 6.782 Atomic orbital electron populations 1.86699 1.15631 1.34879 1.96436 1.25417 0.85826 1.14401 0.94207 0.94330 0.79711 0.73720 0.85461 1.20388 0.98225 0.94294 0.96645 1.17910 0.98717 0.97314 0.91329 1.21498 0.96915 0.95880 0.99626 1.21328 0.99498 1.00351 0.92007 1.21397 0.96089 0.94941 1.00015 1.21445 0.97606 0.97408 0.96072 1.18560 0.97764 0.96475 0.93705 1.21397 0.94341 0.94474 0.97820 1.21281 1.03247 1.01706 0.90942 1.17723 1.03219 0.97208 0.79667 1.85644 1.58143 1.79087 1.39512 1.06430 0.75436 0.75257 0.75682 1.93600 1.85136 1.85264 1.31080 1.93702 1.84153 1.35700 1.82893 1.32136 1.13169 1.12310 1.15681 0.81202 1.23374 0.97998 0.93384 1.02332 1.22856 0.95533 0.93401 0.86059 0.87079 1.87940 1.62463 1.52012 1.26603 1.21543 0.92874 0.89996 0.93250 1.19790 0.97000 0.97880 0.96075 1.21319 0.97502 0.99214 0.95000 1.21460 1.00492 0.98091 0.95233 1.21540 0.95462 0.96307 1.00868 1.21467 0.98233 1.00576 0.94875 1.21315 0.99018 0.97122 0.95386 1.23047 0.89142 0.98460 1.04821 0.77205 0.91709 1.17596 1.16433 0.84322 0.83528 0.82561 0.81845 0.80260 0.81510 0.87469 0.86582 0.90733 0.90823 0.85050 0.84528 0.84445 0.84354 0.84805 0.86662 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -2.86 10.97 -148.98 -1.63 -4.49 16 2 C -0.09 -0.80 2.29 71.24 0.16 -0.63 16 3 Si 0.77 6.24 29.21 68.60 2.00 8.24 16 4 C -0.09 -0.86 4.03 -19.72 -0.08 -0.94 16 5 C -0.05 -0.43 5.42 -21.30 -0.12 -0.54 16 6 C -0.12 -0.86 7.29 22.34 0.16 -0.69 16 7 C -0.11 -0.29 9.95 22.05 0.22 -0.07 16 8 C -0.11 0.08 9.95 22.05 0.22 0.30 16 9 C -0.11 0.08 9.77 22.33 0.22 0.30 16 10 C -0.06 -0.24 5.74 -21.28 -0.12 -0.36 16 11 C -0.06 0.02 9.76 22.32 0.22 0.24 16 12 C -0.15 -0.24 8.42 22.13 0.19 -0.05 16 13 C 0.06 0.47 4.66 22.27 0.10 0.57 16 14 O -0.66 -5.29 8.74 -61.32 -0.54 -5.82 16 15 S 2.57 19.90 5.07 -56.49 -0.29 19.61 16 16 O -0.95 -12.04 17.27 -118.57 -2.05 -14.09 16 17 O -0.97 -12.11 12.88 -118.57 -1.53 -13.64 16 18 C -0.62 -0.03 3.84 31.12 0.12 0.09 16 19 H 0.17 -0.40 5.62 -2.39 -0.01 -0.41 16 20 C -0.13 0.36 7.47 31.12 0.23 0.59 16 21 C 0.08 -0.26 4.37 31.12 0.14 -0.13 16 22 H 0.11 -0.83 7.87 -2.39 -0.02 -0.85 16 23 O -0.37 0.10 10.26 -148.98 -1.53 -1.43 16 24 C 0.10 -0.26 5.90 71.24 0.42 0.16 16 25 C -0.11 -0.06 5.51 -19.86 -0.11 -0.17 16 26 C -0.11 -0.09 9.70 22.27 0.22 0.13 16 27 C -0.13 -0.04 10.05 22.27 0.22 0.19 16 28 C -0.12 0.02 10.05 22.27 0.22 0.24 16 29 C -0.13 0.04 10.05 22.27 0.22 0.26 16 30 C -0.11 -0.01 9.70 22.27 0.22 0.21 16 31 C -0.12 0.20 7.50 31.12 0.23 0.43 16 32 H 0.38 0.03 9.11 -74.06 -0.67 -0.65 16 33 H 0.06 0.59 6.71 -2.38 -0.02 0.57 16 34 H -0.25 -2.32 5.59 99.48 0.56 -1.76 16 35 H -0.24 -3.40 5.69 99.48 0.57 -2.84 16 36 H 0.14 1.02 4.24 -2.91 -0.01 1.01 16 37 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 38 H 0.16 -1.02 8.06 -2.91 -0.02 -1.04 16 39 H 0.16 -1.18 8.06 -2.91 -0.02 -1.21 16 40 H 0.18 -1.42 8.06 -2.91 -0.02 -1.44 16 41 H 0.17 -0.74 6.59 -2.91 -0.02 -0.75 16 42 H 0.11 -0.54 8.14 -2.38 -0.02 -0.56 16 43 H 0.12 -0.34 7.43 -2.39 -0.02 -0.35 16 44 H 0.07 -0.40 8.09 -2.39 -0.02 -0.42 16 45 H 0.07 -0.37 8.08 -2.39 -0.02 -0.39 16 46 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 47 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 48 H 0.14 -0.53 8.06 -2.91 -0.02 -0.55 16 49 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 50 H 0.13 -0.43 8.06 -2.91 -0.02 -0.45 16 51 H 0.12 -0.46 8.10 -2.39 -0.02 -0.48 16 52 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -23.70 427.74 -2.21 -25.91 By element: Atomic # 1 Polarization: -14.45 SS G_CDS: 0.04 Total: -14.41 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 3.31 Total: 0.11 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -7.27 Total: -39.47 kcal Atomic # 14 Polarization: 6.24 SS G_CDS: 2.00 Total: 8.24 kcal Atomic # 16 Polarization: 19.90 SS G_CDS: -0.29 Total: 19.61 kcal Total: -23.70 -2.21 -25.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79478_15608174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.847 kcal (2) G-P(sol) polarization free energy of solvation -23.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds