Wall clock time and date at job start Tue Mar 9 2021 13:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00189 * 2 1 4 4 C 1.52993 * 112.85144 * 74.32395 * 3 2 1 5 5 F 1.39902 * 109.47509 * 286.27837 * 4 3 2 6 6 F 1.39903 * 109.47256 * 46.27858 * 4 3 2 7 7 F 1.39898 * 109.47120 * 166.27859 * 4 3 2 8 8 C 1.53783 * 113.61005 * 303.12778 * 3 2 1 9 9 C 1.53780 * 87.08016 * 270.88539 * 8 3 2 10 10 H 1.09006 * 113.61274 * 219.93346 * 9 8 3 11 11 C 1.52998 * 113.61367 * 89.11999 * 9 8 3 12 12 S 1.81401 * 109.47258 * 174.99772 * 11 9 8 13 13 O 1.42099 * 110.54200 * 68.37212 * 12 11 9 14 14 O 1.42099 * 110.54189 * 291.62497 * 12 11 9 15 15 O 1.52197 * 104.45181 * 179.97438 * 12 11 9 16 16 C 1.35885 * 114.00003 * 74.70529 * 15 12 11 17 17 C 1.39806 * 119.57191 * 275.88567 * 16 15 12 18 18 C 1.36026 * 120.93113 * 180.25954 * 17 16 15 19 19 C 1.40551 * 119.73276 * 359.49763 * 18 17 16 20 20 C 1.40526 * 121.23012 * 180.28046 * 19 18 17 21 21 C 1.36099 * 119.67268 * 179.97438 * 20 19 18 22 22 C 1.39379 * 121.00310 * 0.02562 * 21 20 19 23 23 C 1.36088 * 120.98112 * 359.97438 * 22 21 20 24 24 C 1.40586 * 119.65551 * 359.97438 * 23 22 21 25 25 C 1.36613 * 119.56281 * 95.63743 * 16 15 12 26 26 C 1.50694 * 120.19066 * 359.97438 * 25 16 15 27 27 O 1.42902 * 109.47153 * 117.94377 * 26 25 16 28 28 Si 1.86297 * 109.47155 * 237.94746 * 26 25 16 29 29 C 1.53771 * 87.08056 * 334.56838 * 9 8 3 30 30 H 1.09004 * 109.47051 * 305.66932 * 1 2 3 31 31 H 1.09001 * 109.47239 * 65.66754 * 1 2 3 32 32 H 1.09003 * 109.47524 * 185.66906 * 1 2 3 33 33 H 1.09003 * 113.61046 * 156.33384 * 8 3 2 34 34 H 1.09000 * 113.61558 * 25.43813 * 8 3 2 35 35 H 1.09000 * 109.47370 * 54.99695 * 11 9 8 36 36 H 1.09002 * 109.47088 * 294.99662 * 11 9 8 37 37 H 1.07993 * 119.53688 * 0.03103 * 17 16 15 38 38 H 1.08000 * 120.12946 * 179.76780 * 18 17 16 39 39 H 1.08003 * 120.16504 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.49698 * 179.97438 * 21 20 19 41 41 H 1.07990 * 119.50892 * 179.97438 * 22 21 20 42 42 H 1.07992 * 120.17099 * 179.97438 * 23 22 21 43 43 H 1.09009 * 109.47212 * 357.94836 * 26 25 16 44 44 H 0.96691 * 114.00317 * 303.79816 * 27 26 25 45 45 H 1.48497 * 110.00090 * 64.86662 * 28 26 25 46 46 H 1.48499 * 110.00246 * 186.18877 * 28 26 25 47 47 H 1.09008 * 113.61532 * 139.98278 * 29 9 8 48 48 H 1.09003 * 113.61667 * 270.88285 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.9040 2.0031 1.3574 5 9 0.5839 2.4163 1.5674 6 9 2.2809 1.1140 2.3696 7 9 2.7499 3.1173 1.3766 8 6 1.5573 2.1813 -1.1801 9 6 2.7416 1.5959 -1.9671 10 1 3.2568 2.3277 -2.5895 11 6 2.3999 0.3097 -2.7220 12 16 3.8238 -0.2000 -3.7237 13 8 4.8946 -0.6214 -2.8902 14 8 4.0401 0.7183 -4.7863 15 8 3.3640 -1.4749 -4.4164 16 6 2.4922 -1.2654 -5.4376 17 6 1.1290 -1.1222 -5.1626 18 6 0.2315 -0.9169 -6.1639 19 6 0.6777 -0.8364 -7.4943 20 6 -0.2212 -0.6193 -8.5524 21 6 0.2456 -0.5463 -9.8287 22 6 1.6048 -0.6843 -10.1051 23 6 2.5048 -0.8955 -9.1064 24 6 2.0604 -0.9757 -7.7750 25 6 2.9601 -1.1925 -6.7190 26 6 4.4335 -1.3428 -6.9975 27 8 4.6478 -2.4904 -7.8217 28 14 5.0579 0.1774 -7.8748 29 6 3.4213 1.3514 -0.6096 30 1 -0.3633 0.5993 0.8349 31 1 -0.3634 0.4234 -0.9364 32 1 -0.3634 -1.0226 0.1015 33 1 1.6459 3.2509 -0.9891 34 1 0.5840 1.9015 -1.5832 35 1 1.5430 0.4865 -3.3720 36 1 2.1578 -0.4774 -2.0077 37 1 0.7831 -1.1791 -4.1411 38 1 -0.8192 -0.8117 -5.9371 39 1 -1.2772 -0.5109 -8.3537 40 1 -0.4478 -0.3798 -10.6398 41 1 1.9487 -0.6226 -11.1269 42 1 3.5548 -1.0009 -9.3354 43 1 4.9704 -1.4658 -6.0568 44 1 4.2941 -3.3112 -7.4528 45 1 4.9488 1.3595 -6.9827 46 1 6.4708 -0.0188 -8.2876 47 1 3.9530 0.4015 -0.5522 48 1 4.0195 2.1940 -0.2628 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79478_17541816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:56:21 Heat of formation + Delta-G solvation = -234.068560 kcal Electronic energy + Delta-G solvation = -43046.768910 eV Core-core repulsion = 37134.380119 eV Total energy + Delta-G solvation = -5912.388791 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.098 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.28437 -48.82305 -48.75749 -42.74044 -41.56778 -40.75357 -38.56833 -38.14317 -37.48971 -37.33077 -36.81834 -33.95884 -32.03493 -31.06667 -30.60781 -28.50288 -27.88704 -27.15506 -26.76087 -24.84293 -24.43919 -23.65314 -22.21988 -22.01609 -20.75609 -20.14412 -19.69931 -19.59351 -19.44083 -19.21194 -18.91061 -18.51783 -17.88057 -17.46397 -17.30746 -16.82744 -16.51647 -16.29961 -16.03990 -15.97633 -15.81274 -15.71258 -15.63806 -15.50094 -15.36139 -15.18299 -14.95770 -14.93875 -14.78329 -14.71838 -14.60555 -14.35205 -14.30195 -14.05832 -14.04688 -13.94454 -13.60225 -13.48035 -13.33316 -13.31563 -13.22612 -12.97071 -12.44781 -12.42510 -12.34192 -12.29427 -12.22503 -12.10753 -12.04282 -11.64103 -11.49160 -11.30771 -10.84773 -10.79423 -9.69630 -8.97631 -5.05268 -1.30342 -0.61053 -0.19699 0.80237 0.90911 1.16028 1.48434 1.61487 1.79675 1.87987 2.03936 2.30345 2.49796 2.56909 2.71179 2.79233 2.97304 3.05206 3.17736 3.18955 3.25979 3.46510 3.50211 3.57943 3.65493 3.69646 3.87219 3.90313 4.05952 4.10040 4.15536 4.25842 4.28203 4.32740 4.35577 4.42504 4.43489 4.49095 4.54762 4.61882 4.66420 4.69205 4.81106 4.83204 4.84363 4.92649 5.00260 5.14598 5.23732 5.56635 5.60350 5.64950 5.68594 5.99386 6.39394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.348 6.348 3 C 0.039 3.961 4 C 0.434 3.566 5 F -0.181 7.181 6 F -0.189 7.189 7 F -0.177 7.177 8 C -0.125 4.125 9 C -0.098 4.098 10 H 0.122 0.878 11 C -0.618 4.618 12 S 2.571 3.429 13 O -0.967 6.967 14 O -0.966 6.966 15 O -0.671 6.671 16 C 0.058 3.942 17 C -0.159 4.159 18 C -0.053 4.053 19 C -0.061 4.061 20 C -0.100 4.100 21 C -0.108 4.108 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.042 4.042 25 C -0.091 4.091 26 C -0.089 4.089 27 O -0.534 6.534 28 Si 0.764 3.236 29 C -0.142 4.142 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.180 0.820 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.186 0.814 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.141 0.859 43 H 0.047 0.953 44 H 0.380 0.620 45 H -0.242 1.242 46 H -0.280 1.280 47 H 0.093 0.907 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 1.686 -5.726 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.266 6.266 3 C -0.003 4.003 4 C 0.379 3.621 5 F -0.163 7.163 6 F -0.170 7.170 7 F -0.158 7.158 8 C -0.163 4.163 9 C -0.117 4.117 10 H 0.140 0.860 11 C -0.748 4.748 12 S 2.671 3.329 13 O -0.965 6.965 14 O -0.964 6.964 15 O -0.630 6.630 16 C 0.017 3.983 17 C -0.178 4.178 18 C -0.070 4.070 19 C -0.062 4.062 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.042 4.042 25 C -0.095 4.095 26 C -0.196 4.196 27 O -0.341 6.341 28 Si 0.664 3.336 29 C -0.179 4.179 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.198 0.802 36 H 0.184 0.816 37 H 0.191 0.809 38 H 0.204 0.796 39 H 0.181 0.819 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.158 0.842 43 H 0.065 0.935 44 H 0.229 0.771 45 H -0.167 1.167 46 H -0.207 1.207 47 H 0.112 0.888 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.399 2.360 -6.263 12.367 hybrid contribution 0.225 -1.157 2.809 3.047 sum -10.174 1.203 -3.454 10.812 Atomic orbital electron populations 1.23436 0.78247 1.05400 1.02808 1.88054 1.22639 1.22106 1.93795 1.23991 1.00507 0.87361 0.88476 1.21492 0.73645 0.77631 0.89305 1.93172 1.36207 1.90943 1.95957 1.93191 1.91221 1.68483 1.64116 1.93175 1.71338 1.54510 1.96823 1.23675 1.00405 1.00941 0.91249 1.21826 0.99502 0.94931 0.95489 0.86003 1.30705 1.20267 1.08555 1.15237 1.06161 0.77739 0.73350 0.75606 1.93603 1.52703 1.80148 1.70039 1.93667 1.85500 1.65274 1.51995 1.85709 1.65978 1.59034 1.52322 1.17942 0.88313 1.08059 0.83979 1.21305 0.89044 1.03830 1.03644 1.21460 1.01581 0.94253 0.89716 1.18511 0.92016 1.00045 0.95625 1.21452 1.00531 0.98148 0.91641 1.21418 0.95922 0.97236 0.97966 1.21356 0.93333 0.96157 1.00505 1.21067 1.00389 1.00407 0.91333 1.17802 0.92706 1.00516 0.93174 1.20206 0.96360 1.00168 0.92722 1.25389 0.94193 1.00474 0.99589 1.86693 1.82423 1.17629 1.47375 0.93528 0.79862 0.74018 0.86232 1.23632 0.93188 1.06374 0.94729 0.93235 0.89903 0.86909 0.85509 0.85807 0.80218 0.81621 0.80884 0.79645 0.81864 0.82746 0.82864 0.84233 0.93493 0.77115 1.16690 1.20682 0.88803 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 10.48 113.37 1.19 1.22 16 2 O -0.35 0.52 8.40 -148.98 -1.25 -0.73 16 3 C 0.04 -0.07 0.83 -10.27 -0.01 -0.08 16 4 C 0.43 0.91 2.72 71.98 0.20 1.10 16 5 F -0.18 -0.29 15.27 44.97 0.69 0.39 16 6 F -0.19 -1.29 17.14 44.97 0.77 -0.52 16 7 F -0.18 -0.42 15.79 44.97 0.71 0.29 16 8 C -0.12 0.97 6.50 31.12 0.20 1.18 16 9 C -0.10 0.47 3.84 -10.27 -0.04 0.43 16 10 H 0.12 -0.81 8.13 -2.38 -0.02 -0.83 16 11 C -0.62 3.11 4.81 71.98 0.35 3.45 16 12 S 2.57 15.11 4.94 -56.49 -0.28 14.83 16 13 O -0.97 -13.42 18.09 -118.57 -2.15 -15.56 16 14 O -0.97 -9.49 13.81 -118.57 -1.64 -11.13 16 15 O -0.67 -3.95 8.79 -61.35 -0.54 -4.49 16 16 C 0.06 0.17 4.68 22.27 0.10 0.28 16 17 C -0.16 0.86 8.25 22.13 0.18 1.04 16 18 C -0.05 0.42 9.76 22.32 0.22 0.64 16 19 C -0.06 0.23 5.74 -21.28 -0.12 0.11 16 20 C -0.10 0.80 9.77 22.33 0.22 1.02 16 21 C -0.11 0.85 9.95 22.05 0.22 1.06 16 22 C -0.10 0.52 9.95 22.04 0.22 0.74 16 23 C -0.11 0.09 7.71 22.34 0.17 0.26 16 24 C -0.04 -0.05 5.40 -21.30 -0.12 -0.17 16 25 C -0.09 -0.46 4.02 -19.72 -0.08 -0.54 16 26 C -0.09 -0.76 2.17 71.23 0.15 -0.61 16 27 O -0.53 -3.16 11.58 -148.98 -1.73 -4.89 16 28 Si 0.76 6.45 27.79 68.60 1.91 8.35 16 29 C -0.14 0.14 6.90 31.12 0.21 0.36 16 30 H 0.05 -0.25 6.20 -2.38 -0.01 -0.26 16 31 H 0.08 -1.06 6.55 -2.39 -0.02 -1.07 16 32 H 0.11 -1.06 8.14 -2.39 -0.02 -1.08 16 33 H 0.13 -1.24 7.97 -2.39 -0.02 -1.26 16 34 H 0.12 -1.57 6.32 -2.39 -0.02 -1.59 16 35 H 0.18 -2.23 6.08 -2.39 -0.01 -2.24 16 36 H 0.17 -1.05 6.12 -2.39 -0.01 -1.07 16 37 H 0.17 -2.21 6.81 -2.91 -0.02 -2.23 16 38 H 0.19 -3.05 8.06 -2.91 -0.02 -3.07 16 39 H 0.16 -2.31 8.06 -2.91 -0.02 -2.33 16 40 H 0.15 -1.97 8.06 -2.91 -0.02 -2.00 16 41 H 0.15 -1.53 8.06 -2.92 -0.02 -1.55 16 42 H 0.14 -0.08 4.27 -2.91 -0.01 -0.10 16 43 H 0.05 0.56 6.50 -2.38 -0.02 0.54 16 44 H 0.38 0.16 9.04 -74.06 -0.67 -0.51 16 45 H -0.24 -3.26 6.37 99.48 0.63 -2.62 16 46 H -0.28 -3.68 7.11 99.48 0.71 -2.97 16 47 H 0.09 0.19 8.10 -2.38 -0.02 0.17 16 48 H 0.13 -0.42 7.08 -2.39 -0.02 -0.43 16 Total: 0.00 -28.61 398.09 0.13 -28.48 By element: Atomic # 1 Polarization: -26.87 SS G_CDS: 0.36 Total: -26.51 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 3.27 Total: 11.48 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -7.30 Total: -36.81 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 2.17 Total: 0.17 kcal Atomic # 14 Polarization: 6.45 SS G_CDS: 1.91 Total: 8.35 kcal Atomic # 16 Polarization: 15.11 SS G_CDS: -0.28 Total: 14.83 kcal Total: -28.61 0.13 -28.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79478_17541816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.588 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds