Wall clock time and date at job start Tue Mar 9 2021 14:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35987 * 117.00096 * 2 1 4 4 C 1.38521 * 120.07590 * 0.27687 * 3 2 1 5 5 C 1.38287 * 120.00206 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.92680 * 180.02562 * 5 4 3 7 7 O 1.42897 * 109.47665 * 64.99422 * 6 5 4 8 8 Si 1.86303 * 109.47292 * 184.99815 * 6 5 4 9 9 H 1.48498 * 109.46850 * 59.99488 * 8 6 5 10 10 H 1.48494 * 109.47214 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46594 * 299.99696 * 8 6 5 12 12 C 1.38205 * 120.14799 * 359.97257 * 5 4 3 13 13 C 1.38291 * 120.14254 * 0.04990 * 12 5 4 14 14 C 1.38525 * 120.00348 * 359.69859 * 13 12 5 15 15 O 1.35984 * 120.07669 * 180.02562 * 14 13 12 16 16 S 1.52196 * 114.00333 * 89.99758 * 15 14 13 17 17 O 1.42109 * 106.40323 * 188.54176 * 16 15 14 18 18 O 1.42099 * 106.40348 * 321.46174 * 16 15 14 19 19 C 1.76198 * 107.22006 * 75.00162 * 16 15 14 20 20 C 1.38234 * 119.99846 * 270.27961 * 19 16 15 21 21 C 1.38234 * 119.99954 * 180.02562 * 20 19 16 22 22 C 1.38241 * 120.00115 * 359.96402 * 21 20 19 23 Xx 1.80998 * 119.99992 * 179.97438 * 22 21 20 24 23 F 6.69294 * 58.74668 * 130.01014 * 2 1 3 25 24 F 1.60998 * 89.99824 * 135.00665 * 23 22 21 26 25 F 1.61000 * 90.00079 * 315.00175 * 23 22 21 27 26 F 1.61000 * 89.99800 * 225.00278 * 23 22 21 28 27 F 1.60994 * 89.99906 * 45.00224 * 23 22 21 29 28 C 1.38234 * 119.99819 * 359.96647 * 22 21 20 30 29 C 1.38233 * 120.00099 * 89.99895 * 19 16 15 31 30 H 1.09001 * 109.47103 * 300.00410 * 1 2 3 32 31 H 1.09004 * 109.47054 * 59.99914 * 1 2 3 33 32 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 34 33 H 1.08003 * 119.99996 * 359.95679 * 4 3 2 35 34 H 1.08999 * 109.47201 * 304.99514 * 6 5 4 36 35 H 0.96703 * 113.99689 * 59.99444 * 7 6 5 37 36 H 1.07996 * 119.93237 * 180.02562 * 12 5 4 38 37 H 1.07999 * 119.99429 * 179.97438 * 13 12 5 39 38 H 1.08003 * 120.00218 * 359.96729 * 20 19 16 40 39 H 1.08001 * 120.00092 * 179.97438 * 21 20 19 41 40 H 1.08002 * 120.00371 * 180.02562 * 29 22 21 42 41 H 1.08004 * 119.99736 * 0.20958 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2936 2.3744 0.0058 5 6 1.9230 3.6057 0.0063 6 6 1.1023 4.8696 0.0132 7 8 0.3705 4.9558 1.2375 8 14 2.2309 6.3438 -0.1408 9 1 2.9913 6.2542 -1.4132 10 1 1.4222 7.5892 -0.1334 11 1 3.1788 6.3629 1.0022 12 6 3.3030 3.6798 0.0016 13 6 4.0606 2.5229 -0.0046 14 6 3.4364 1.2862 0.0001 15 8 4.1799 0.1476 -0.0055 16 16 4.5289 -0.3708 1.3822 17 8 5.4596 -1.4280 1.1934 18 8 4.8028 0.7724 2.1805 19 6 3.0712 -1.1041 2.0470 20 6 2.1820 -0.3365 2.7756 21 6 1.0386 -0.9119 3.2976 22 6 0.7841 -2.2548 3.0904 23 9 -2.0434 -3.6786 4.3824 24 9 -0.9757 -3.7573 2.3738 25 9 -0.4495 -2.2595 5.1752 26 9 0.1536 -4.2661 4.2842 27 9 -1.5788 -1.7506 3.2647 28 6 1.6726 -3.0220 2.3605 29 6 2.8139 -2.4456 1.8350 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2150 2.3193 0.0096 34 1 0.4065 4.8556 -0.8257 35 1 0.9272 4.9727 2.0281 36 1 3.7910 4.6433 0.0025 37 1 5.1389 2.5835 -0.0087 38 1 2.3810 0.7125 2.9379 39 1 0.3440 -0.3123 3.8673 40 1 1.4737 -4.0711 2.1982 41 1 3.5082 -3.0450 1.2647 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79479_8643202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:02:29 Heat of formation + Delta-G solvation = 272.638884 kcal Electronic energy + Delta-G solvation = -40802.848540 eV Core-core repulsion = 34527.396061 eV Total energy + Delta-G solvation = -6275.452479 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 418.056 amu Computer time = 37.13 seconds Orbital eigenvalues (eV) -44.45206 -44.30048 -44.25864 -44.15815 -43.63739 -42.62315 -41.27679 -40.39474 -39.19802 -38.72891 -37.39455 -37.17084 -33.22663 -33.03627 -32.29843 -31.55811 -28.63670 -26.89171 -24.84460 -24.74874 -23.92337 -23.44814 -21.86355 -20.45177 -19.65829 -19.04911 -18.65671 -18.35143 -17.63745 -17.48075 -16.90014 -16.70313 -16.59107 -16.32936 -16.11345 -15.99445 -15.62236 -15.53703 -15.51594 -15.30368 -15.18156 -14.98721 -14.81906 -14.56906 -14.53043 -14.33455 -14.25757 -14.21642 -14.18130 -14.09309 -13.97127 -13.76827 -13.67871 -13.66002 -13.57937 -13.53977 -13.34554 -13.23149 -12.86017 -12.71778 -12.63233 -12.37112 -12.25338 -12.18291 -12.07033 -12.01190 -11.61481 -11.49568 -11.46257 -11.06688 -10.48672 -10.15111 -9.55599 -5.32643 -4.85939 -3.46197 -1.53191 -1.18174 -0.74457 -0.18162 0.06353 0.92629 1.19192 1.41757 1.52344 1.58171 1.89889 2.00790 2.18257 2.27087 2.40835 2.59741 2.69407 3.17359 3.25703 3.36731 3.47846 3.62060 3.70217 3.75041 3.81702 3.90772 3.96506 4.00454 4.15342 4.24117 4.30158 4.31874 4.38441 4.56949 4.61419 4.70902 4.76275 4.78247 4.96128 5.15745 5.38436 5.99646 6.73620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.315 6.315 3 C 0.131 3.869 4 C -0.165 4.165 5 C -0.049 4.049 6 C -0.078 4.078 7 O -0.546 6.546 8 Si 0.966 3.034 9 H -0.253 1.253 10 H -0.281 1.281 11 H -0.242 1.242 12 C -0.149 4.149 13 C -0.050 4.050 14 C 0.001 3.999 15 O -0.636 6.636 16 S 2.692 3.308 17 O -0.938 6.938 18 O -0.945 6.945 19 C -0.682 4.682 20 C 0.056 3.944 21 C -0.126 4.126 22 C 0.388 3.612 23 F -0.205 7.205 24 F -0.157 7.157 25 F -0.164 7.164 26 F -0.166 7.166 27 F -0.152 7.152 28 C -0.126 4.126 29 C 0.065 3.935 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.167 0.833 34 H 0.136 0.864 35 H 0.393 0.607 36 H 0.153 0.847 37 H 0.165 0.835 38 H 0.216 0.784 39 H 0.204 0.796 40 H 0.201 0.799 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 8.677 -5.988 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.228 6.228 3 C 0.082 3.918 4 C -0.183 4.183 5 C -0.051 4.051 6 C -0.189 4.189 7 O -0.353 6.353 8 Si 0.791 3.209 9 H -0.177 1.177 10 H -0.207 1.207 11 H -0.165 1.165 12 C -0.167 4.167 13 C -0.070 4.070 14 C -0.041 4.041 15 O -0.596 6.596 16 S 2.782 3.218 17 O -0.936 6.936 18 O -0.944 6.944 19 C -0.764 4.764 20 C 0.038 3.962 21 C -0.143 4.143 22 C 0.382 3.618 23 F -0.205 7.205 24 F -0.155 7.155 25 F -0.162 7.162 26 F -0.164 7.164 27 F -0.151 7.151 28 C -0.143 4.143 29 C 0.047 3.953 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.185 0.815 34 H 0.153 0.847 35 H 0.243 0.757 36 H 0.170 0.830 37 H 0.183 0.817 38 H 0.233 0.767 39 H 0.221 0.779 40 H 0.218 0.782 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.138 9.237 -6.670 12.942 hybrid contribution -1.927 -1.608 1.158 2.764 sum 4.211 7.629 -5.512 10.311 Atomic orbital electron populations 1.23559 0.75662 1.05923 1.03750 1.86161 1.23733 1.25160 1.87734 1.19161 0.89807 0.86716 0.96078 1.21246 1.01896 0.89552 1.05620 1.20541 0.93741 0.96097 0.94717 1.25024 1.02227 1.00063 0.91631 1.86543 1.36817 1.96484 1.15483 0.85420 0.77478 0.76146 0.81869 1.17685 1.20686 1.16543 1.21143 0.93205 0.98952 1.03389 1.21379 1.02651 0.89196 0.93768 1.17597 0.86078 0.82572 1.17877 1.85775 1.72291 1.46377 1.55128 1.02504 0.73062 0.73786 0.72482 1.93670 1.58363 1.57302 1.84315 1.93660 1.82873 1.48481 1.69344 1.31868 1.24174 1.06060 1.14282 1.21546 0.84974 1.01839 0.87872 1.22114 0.99332 0.89822 1.03065 1.27970 0.54569 0.85881 0.93336 2.00000 1.93993 1.39004 1.87482 1.99921 1.90695 1.61443 1.63445 1.99920 1.98930 1.39267 1.78107 1.99920 1.73604 1.48280 1.94616 1.99919 1.94434 1.21233 1.99471 1.22165 0.89734 1.05781 0.96659 1.21549 0.90415 0.92052 0.91277 0.90390 0.90380 0.87099 0.81538 0.84671 0.75745 0.83016 0.81707 0.76731 0.77914 0.78227 0.76389 Number of geometries 1 Number of calculations of the screened coulomb radii 15 The total number of SCF iterations 923. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.31 2.97 7.78 -79.55 -0.62 2.35 16 3 C 0.13 -1.11 5.68 22.57 0.13 -0.98 16 4 C -0.16 1.75 8.67 22.35 0.19 1.94 16 5 C -0.05 0.51 5.35 -19.86 -0.11 0.40 16 6 C -0.08 0.85 2.80 71.24 0.20 1.05 16 7 O -0.55 5.15 12.83 -148.98 -1.91 3.24 16 8 Si 0.97 -8.37 25.13 68.60 1.72 -6.65 16 9 H -0.25 1.88 7.11 99.48 0.71 2.59 16 10 H -0.28 0.90 7.11 99.48 0.71 1.61 16 11 H -0.24 2.24 7.04 99.48 0.70 2.94 16 12 C -0.15 1.41 8.66 22.27 0.19 1.61 16 13 C -0.05 0.37 9.19 22.35 0.21 0.58 16 14 C 0.00 -0.01 4.80 22.57 0.11 0.10 16 15 O -0.64 3.05 9.94 -60.51 -0.60 2.44 16 16 S 2.69 -13.71 5.42 -56.49 -0.31 -14.02 16 17 O -0.94 -0.61 17.27 -118.78 -2.05 -2.66 16 18 O -0.95 3.00 15.61 -118.78 -1.85 1.15 16 19 C -0.68 6.68 4.24 22.27 0.09 6.77 16 20 C 0.06 -0.68 7.69 22.27 0.17 -0.51 16 21 C -0.13 1.16 8.62 22.27 0.19 1.35 16 22 C 0.39 -1.22 4.82 22.27 0.11 -1.11 16 23 F -0.20 -4.64 16.66 44.97 0.75 -3.89 16 24 F -0.16 -1.72 15.31 44.97 0.69 -1.03 16 25 F -0.16 -2.03 15.31 44.97 0.69 -1.34 16 26 F -0.17 -2.17 15.31 44.97 0.69 -1.48 16 27 F -0.15 -1.46 15.31 44.97 0.69 -0.77 16 28 C -0.13 1.03 8.62 22.27 0.19 1.22 16 29 C 0.06 -0.75 9.52 22.27 0.21 -0.53 16 30 H 0.08 -1.14 7.65 -2.39 -0.02 -1.16 16 31 H 0.08 -1.05 7.68 -2.38 -0.02 -1.07 16 32 H 0.11 -1.33 8.14 -2.39 -0.02 -1.35 16 33 H 0.17 -2.26 6.30 -2.91 -0.02 -2.28 16 34 H 0.14 -1.71 7.96 -2.39 -0.02 -1.73 16 35 H 0.39 -6.24 8.70 -74.06 -0.64 -6.89 16 36 H 0.15 -1.84 4.85 -2.91 -0.01 -1.86 16 37 H 0.17 -1.71 8.06 -2.91 -0.02 -1.73 16 38 H 0.22 -3.79 7.62 -2.91 -0.02 -3.81 16 39 H 0.20 -2.37 7.40 -2.91 -0.02 -2.39 16 40 H 0.20 -1.96 7.40 -2.91 -0.02 -1.98 16 41 H 0.22 -3.60 7.62 -2.91 -0.02 -3.62 16 Total: 0.00 -34.58 381.00 2.14 -32.44 By element: Atomic # 1 Polarization: -23.98 SS G_CDS: 1.25 Total: -22.73 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 3.00 Total: 12.94 kcal Atomic # 8 Polarization: 13.56 SS G_CDS: -7.04 Total: 6.52 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 3.50 Total: -8.51 kcal Atomic # 14 Polarization: -8.37 SS G_CDS: 1.72 Total: -6.65 kcal Atomic # 16 Polarization: -13.71 SS G_CDS: -0.31 Total: -14.02 kcal Total: -34.58 2.14 -32.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79479_8643202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 305.083 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 270.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 272.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 37.13 seconds