Wall clock time and date at job start Tue Mar 9 2021 14:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00131 * 2 1 4 4 O 1.20822 * 119.99978 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99886 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.84807 * 48.80402 * 5 3 2 7 7 C 1.53781 * 113.61469 * 180.02562 * 5 3 2 8 8 C 1.53776 * 87.08050 * 140.06548 * 7 5 3 9 9 H 1.08998 * 113.61223 * 89.20172 * 8 7 5 10 10 S 1.81399 * 113.61112 * 220.01709 * 8 7 5 11 11 O 1.42107 * 110.54161 * 68.38138 * 10 8 7 12 12 O 1.42098 * 110.54592 * 291.62618 * 10 8 7 13 13 O 1.52207 * 104.44814 * 179.97438 * 10 8 7 14 14 C 1.35914 * 113.99701 * 75.93001 * 13 10 8 15 15 C 1.38711 * 120.04579 * 95.60852 * 14 13 10 16 16 C 1.50699 * 120.02279 * 0.02562 * 15 14 13 17 17 O 1.42900 * 109.47065 * 195.70418 * 16 15 14 18 18 Si 1.86310 * 109.47008 * 75.70674 * 16 15 14 19 19 C 1.38162 * 119.95400 * 179.72638 * 15 14 13 20 20 C 1.38330 * 120.04559 * 0.25471 * 19 15 14 21 21 Br 1.89095 * 119.95362 * 180.02562 * 20 19 15 22 22 C 1.38364 * 120.09056 * 0.04632 * 20 19 15 23 23 C 1.38124 * 120.04599 * 359.97438 * 22 20 19 24 24 C 1.53773 * 87.08177 * 334.56609 * 8 7 5 25 25 H 1.09003 * 109.47010 * 59.99927 * 1 2 3 26 26 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47046 * 299.99835 * 1 2 3 28 28 H 1.09007 * 113.61234 * 25.51580 * 7 5 3 29 29 H 1.08999 * 113.61188 * 254.61844 * 7 5 3 30 30 H 1.09000 * 109.47181 * 315.70912 * 16 15 14 31 31 H 0.96695 * 113.99899 * 57.05099 * 17 16 15 32 32 H 1.48500 * 109.99536 * 300.00126 * 18 16 15 33 33 H 1.48497 * 109.99719 * 61.31906 * 18 16 15 34 34 H 1.08002 * 119.97828 * 180.27507 * 19 15 14 35 35 H 1.07997 * 119.97419 * 179.97438 * 22 20 19 36 36 H 1.07997 * 120.02318 * 179.97438 * 23 22 20 37 37 H 1.09011 * 113.61575 * 139.98197 * 24 8 7 38 38 H 1.09003 * 113.62067 * 270.88316 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0240 0.6361 -0.7549 7 6 4.1079 2.7141 0.0011 8 6 5.1821 2.2259 0.9872 9 1 6.0820 1.8490 0.5012 10 16 5.5414 3.4090 2.3146 11 8 4.4305 3.5252 3.1932 12 8 6.1870 4.5625 1.7932 13 8 6.6123 2.7255 3.1529 14 6 7.8496 2.7437 2.5908 15 6 8.7580 3.7310 2.9430 16 6 8.3739 4.7845 3.9498 17 8 9.2990 5.8714 3.8784 18 14 8.4099 4.0499 5.6616 19 6 10.0172 3.7444 2.3746 20 6 10.3705 2.7771 1.4510 21 35 12.0949 2.7974 0.6753 22 6 9.4637 1.7950 1.0938 23 6 8.2037 1.7783 1.6593 24 6 4.1926 1.1224 1.3968 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.4178 3.4401 0.4313 29 1 4.5100 3.0297 -0.9616 30 1 7.3696 5.1472 3.7311 31 1 9.3664 6.2735 3.0016 32 1 7.4521 2.9184 5.7489 33 1 9.7814 3.5806 5.9841 34 1 10.7263 4.5104 2.6518 35 1 9.7414 1.0409 0.3722 36 1 7.4961 1.0118 1.3799 37 1 4.6631 0.1529 1.5609 38 1 3.5257 1.4131 2.2085 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79519_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:04:08 Heat of formation + Delta-G solvation = -147.606728 kcal Electronic energy + Delta-G solvation = -29072.273204 eV Core-core repulsion = 24636.560549 eV Total energy + Delta-G solvation = -4435.712655 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.990 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.73900 -41.99564 -39.85656 -39.73403 -38.45965 -37.87838 -37.41878 -37.35743 -33.50950 -32.96854 -30.44042 -30.02131 -27.95899 -27.45002 -27.31929 -24.83638 -23.50236 -23.21566 -21.80903 -20.98380 -20.00645 -19.51121 -18.99171 -18.70490 -18.35287 -17.86782 -17.57994 -17.25965 -16.98612 -16.76941 -16.37719 -15.94181 -15.65252 -15.44545 -14.94872 -14.68975 -14.64920 -14.51034 -14.16935 -14.09148 -13.99967 -13.89589 -13.64276 -13.43446 -13.40478 -13.33960 -13.19349 -12.92706 -12.75099 -12.29416 -12.18383 -12.09601 -11.88471 -11.82355 -11.79390 -11.56364 -11.46042 -11.37946 -10.35105 -9.99365 -4.94935 -1.39269 -0.52744 -0.36715 0.23052 0.70348 1.00459 1.24205 1.54689 1.66887 1.89379 1.96433 2.22898 2.36383 2.61224 2.81818 2.95329 2.97758 3.06399 3.26033 3.40412 3.57856 3.64489 3.70441 3.76994 3.87859 4.09366 4.10979 4.11358 4.12068 4.15756 4.18682 4.27370 4.35209 4.37909 4.51710 4.53748 4.65251 4.66523 4.71638 5.13091 5.25784 6.36641 6.58434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.096 4.096 6 H 0.139 0.861 7 C -0.086 4.086 8 C -0.655 4.655 9 H 0.163 0.837 10 S 2.589 3.411 11 O -0.909 6.909 12 O -0.938 6.938 13 O -0.658 6.658 14 C 0.082 3.918 15 C -0.081 4.081 16 C -0.087 4.087 17 O -0.529 6.529 18 Si 0.752 3.248 19 C -0.066 4.066 20 C -0.074 4.074 21 Br -0.022 7.022 22 C -0.073 4.073 23 C -0.127 4.127 24 C -0.093 4.093 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.372 0.628 32 H -0.233 1.233 33 H -0.247 1.247 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.107 0.893 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -4.077 -2.485 4.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.384 6.384 5 C -0.115 4.115 6 H 0.157 0.843 7 C -0.124 4.124 8 C -0.761 4.761 9 H 0.181 0.819 10 S 2.684 3.316 11 O -0.907 6.907 12 O -0.937 6.937 13 O -0.617 6.617 14 C 0.040 3.960 15 C -0.084 4.084 16 C -0.194 4.194 17 O -0.334 6.334 18 Si 0.646 3.354 19 C -0.085 4.085 20 C -0.154 4.154 21 Br 0.064 6.936 22 C -0.093 4.093 23 C -0.147 4.147 24 C -0.131 4.131 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.220 0.780 32 H -0.157 1.157 33 H -0.170 1.170 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.125 0.875 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.530 -4.131 -1.093 4.539 hybrid contribution -0.688 -0.692 -2.159 2.369 sum 0.842 -4.824 -3.252 5.878 Atomic orbital electron populations 1.23372 0.75565 1.04191 1.02946 1.86501 1.24017 1.32934 1.83720 1.23411 0.91439 0.81718 0.72538 1.90715 1.66810 1.36377 1.44536 1.22418 0.88095 1.00032 1.00996 0.84342 1.22629 0.93821 0.96035 0.99937 1.32327 1.08360 1.16531 1.18883 0.81912 1.05806 0.74574 0.75481 0.75690 1.93695 1.51126 1.84876 1.60993 1.93670 1.72274 1.46563 1.81154 1.85781 1.27694 1.85109 1.63125 1.17815 0.82042 0.98396 0.97711 1.20492 0.93874 0.96886 0.97173 1.25507 0.95932 0.88522 1.09440 1.86724 1.62800 1.47307 1.36592 0.93459 0.82460 0.82378 0.77078 1.20981 0.95287 0.98143 0.94114 1.22092 0.94013 0.99054 1.00282 1.96879 1.16703 1.98592 1.81394 1.21075 0.91358 0.97643 0.99193 1.21404 0.98509 0.98123 0.96690 1.22681 0.95462 0.98398 0.96539 0.91589 0.87679 0.91508 0.87206 0.87457 0.89654 0.77957 1.15665 1.17035 0.82263 0.82830 0.82806 0.87466 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.20 10.57 -39.26 -0.41 -0.61 16 3 C 0.47 0.53 7.49 36.01 0.27 0.80 16 4 O -0.50 -2.11 15.65 -18.75 -0.29 -2.40 16 5 C -0.10 0.21 4.26 -90.96 -0.39 -0.18 16 6 H 0.14 -0.69 8.14 -51.93 -0.42 -1.11 16 7 C -0.09 0.15 6.99 -25.92 -0.18 -0.03 16 8 C -0.65 1.63 3.93 -25.93 -0.10 1.53 16 9 H 0.16 -0.92 5.63 -51.93 -0.29 -1.21 16 10 S 2.59 3.93 4.95 -107.50 -0.53 3.40 16 11 O -0.91 -4.15 17.27 -67.04 -1.16 -5.31 16 12 O -0.94 -2.89 15.08 -67.03 -1.01 -3.90 16 13 O -0.66 -0.95 8.63 -51.79 -0.45 -1.40 16 14 C 0.08 0.07 4.34 -39.22 -0.17 -0.10 16 15 C -0.08 -0.12 3.99 -104.48 -0.42 -0.53 16 16 C -0.09 -0.14 2.42 36.01 0.09 -0.05 16 17 O -0.53 -0.31 11.50 -35.23 -0.41 -0.72 16 18 Si 0.75 0.91 32.36 -169.99 -5.50 -4.59 16 19 C -0.07 -0.01 8.94 -39.58 -0.35 -0.37 16 20 C -0.07 0.04 6.22 -39.50 -0.25 -0.21 16 21 Br -0.02 0.01 33.70 -68.01 -2.29 -2.28 16 22 C -0.07 0.15 9.78 -39.58 -0.39 -0.24 16 23 C -0.13 0.26 8.56 -39.43 -0.34 -0.08 16 24 C -0.09 0.25 7.19 -25.92 -0.19 0.06 16 25 H 0.07 -0.07 8.13 -51.93 -0.42 -0.49 16 26 H 0.10 -0.37 8.14 -51.93 -0.42 -0.79 16 27 H 0.07 -0.06 8.13 -51.93 -0.42 -0.48 16 28 H 0.11 -0.03 7.40 -51.93 -0.38 -0.41 16 29 H 0.11 -0.39 8.14 -51.93 -0.42 -0.82 16 30 H 0.09 0.16 6.16 -51.93 -0.32 -0.16 16 31 H 0.37 -0.81 8.69 45.56 0.40 -0.42 16 32 H -0.23 -0.65 7.11 56.52 0.40 -0.25 16 33 H -0.25 -0.73 7.11 56.52 0.40 -0.33 16 34 H 0.16 -0.15 7.08 -52.49 -0.37 -0.53 16 35 H 0.15 -0.70 8.06 -52.49 -0.42 -1.12 16 36 H 0.15 -0.87 6.59 -52.49 -0.35 -1.22 16 37 H 0.11 -0.57 8.14 -51.92 -0.42 -0.99 16 38 H 0.11 -0.15 7.38 -51.93 -0.38 -0.54 16 LS Contribution 354.39 15.07 5.34 5.34 Total: 0.00 -9.80 354.39 -11.91 -21.71 By element: Atomic # 1 Polarization: -7.01 SS G_CDS: -3.86 Total: -10.86 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.34 Total: 1.63 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -3.73 Total: -14.35 kcal Atomic # 14 Polarization: 0.91 SS G_CDS: -5.50 Total: -4.59 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -0.53 Total: 3.40 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.29 Total: -2.28 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -9.80 -11.91 -21.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.893 kcal (2) G-P(sol) polarization free energy of solvation -9.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds