Wall clock time and date at job start Tue Mar 9 2021 14:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00131 * 2 1 4 4 O 1.20822 * 119.99978 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99886 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.84807 * 48.80402 * 5 3 2 7 7 C 1.53781 * 113.61469 * 180.02562 * 5 3 2 8 8 C 1.53776 * 87.08050 * 140.06548 * 7 5 3 9 9 H 1.08998 * 113.61223 * 89.20172 * 8 7 5 10 10 S 1.81399 * 113.61112 * 220.01709 * 8 7 5 11 11 O 1.42107 * 110.54161 * 68.38138 * 10 8 7 12 12 O 1.42098 * 110.54592 * 291.62618 * 10 8 7 13 13 O 1.52207 * 104.44814 * 179.97438 * 10 8 7 14 14 C 1.35914 * 113.99701 * 75.93001 * 13 10 8 15 15 C 1.38711 * 120.04579 * 95.60852 * 14 13 10 16 16 C 1.50699 * 120.02279 * 0.02562 * 15 14 13 17 17 O 1.42900 * 109.47065 * 195.70418 * 16 15 14 18 18 Si 1.86310 * 109.47008 * 75.70674 * 16 15 14 19 19 C 1.38162 * 119.95400 * 179.72638 * 15 14 13 20 20 C 1.38330 * 120.04559 * 0.25471 * 19 15 14 21 21 Br 1.89095 * 119.95362 * 180.02562 * 20 19 15 22 22 C 1.38364 * 120.09056 * 0.04632 * 20 19 15 23 23 C 1.38124 * 120.04599 * 359.97438 * 22 20 19 24 24 C 1.53773 * 87.08177 * 334.56609 * 8 7 5 25 25 H 1.09003 * 109.47010 * 59.99927 * 1 2 3 26 26 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47046 * 299.99835 * 1 2 3 28 28 H 1.09007 * 113.61234 * 25.51580 * 7 5 3 29 29 H 1.08999 * 113.61188 * 254.61844 * 7 5 3 30 30 H 1.09000 * 109.47181 * 315.70912 * 16 15 14 31 31 H 0.96695 * 113.99899 * 57.05099 * 17 16 15 32 32 H 1.48500 * 109.99536 * 300.00126 * 18 16 15 33 33 H 1.48497 * 109.99719 * 61.31906 * 18 16 15 34 34 H 1.08002 * 119.97828 * 180.27507 * 19 15 14 35 35 H 1.07997 * 119.97419 * 179.97438 * 22 20 19 36 36 H 1.07997 * 120.02318 * 179.97438 * 23 22 20 37 37 H 1.09011 * 113.61575 * 139.98197 * 24 8 7 38 38 H 1.09003 * 113.62067 * 270.88316 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0240 0.6361 -0.7549 7 6 4.1079 2.7141 0.0011 8 6 5.1821 2.2259 0.9872 9 1 6.0820 1.8490 0.5012 10 16 5.5414 3.4090 2.3146 11 8 4.4305 3.5252 3.1932 12 8 6.1870 4.5625 1.7932 13 8 6.6123 2.7255 3.1529 14 6 7.8496 2.7437 2.5908 15 6 8.7580 3.7310 2.9430 16 6 8.3739 4.7845 3.9498 17 8 9.2990 5.8714 3.8784 18 14 8.4099 4.0499 5.6616 19 6 10.0172 3.7444 2.3746 20 6 10.3705 2.7771 1.4510 21 35 12.0949 2.7974 0.6753 22 6 9.4637 1.7950 1.0938 23 6 8.2037 1.7783 1.6593 24 6 4.1926 1.1224 1.3968 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.4178 3.4401 0.4313 29 1 4.5100 3.0297 -0.9616 30 1 7.3696 5.1472 3.7311 31 1 9.3664 6.2735 3.0016 32 1 7.4521 2.9184 5.7489 33 1 9.7814 3.5806 5.9841 34 1 10.7263 4.5104 2.6518 35 1 9.7414 1.0409 0.3722 36 1 7.4961 1.0118 1.3799 37 1 4.6631 0.1529 1.5609 38 1 3.5257 1.4131 2.2085 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79519_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:04:08 Heat of formation + Delta-G solvation = -147.898724 kcal Electronic energy + Delta-G solvation = -29072.285866 eV Core-core repulsion = 24636.560549 eV Total energy + Delta-G solvation = -4435.725317 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.990 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.71163 -41.98296 -39.80398 -39.64664 -38.59654 -37.89375 -37.50046 -37.48801 -33.44562 -32.86974 -30.36345 -29.94466 -27.85360 -27.38328 -27.16481 -24.76662 -23.47761 -23.18597 -21.79007 -20.85094 -19.99580 -19.51545 -19.02050 -18.70692 -18.38668 -17.85639 -17.55078 -17.18120 -16.90235 -16.73246 -16.36837 -15.97291 -15.59486 -15.35179 -14.90398 -14.70043 -14.60272 -14.50453 -14.20418 -14.04376 -13.96425 -13.86605 -13.67245 -13.50866 -13.42240 -13.33407 -13.07128 -12.86578 -12.65784 -12.38564 -12.22357 -11.94649 -11.89734 -11.80055 -11.72039 -11.53516 -11.44198 -11.36494 -10.27694 -9.94195 -5.08545 -1.40530 -0.47923 -0.25566 0.31399 0.69877 0.97944 1.15536 1.51784 1.63369 1.74675 2.00550 2.26144 2.43534 2.71356 2.90309 3.04053 3.14211 3.17890 3.43851 3.56474 3.58812 3.79502 3.82164 3.89529 4.10358 4.16763 4.22329 4.23826 4.25944 4.28928 4.34696 4.45598 4.57824 4.64383 4.66365 4.67981 4.76838 4.80678 4.88739 5.25353 5.27126 6.44284 6.56169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.357 6.357 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.088 4.088 6 H 0.180 0.820 7 C -0.101 4.101 8 C -0.622 4.622 9 H 0.207 0.793 10 S 2.576 3.424 11 O -0.956 6.956 12 O -0.964 6.964 13 O -0.664 6.664 14 C 0.060 3.940 15 C -0.105 4.105 16 C -0.094 4.094 17 O -0.534 6.534 18 Si 0.794 3.206 19 C -0.074 4.074 20 C -0.082 4.082 21 Br -0.024 7.024 22 C -0.065 4.065 23 C -0.117 4.117 24 C -0.098 4.098 25 H 0.062 0.938 26 H 0.131 0.869 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.383 0.617 32 H -0.258 1.258 33 H -0.270 1.270 34 H 0.162 0.838 35 H 0.186 0.814 36 H 0.198 0.802 37 H 0.146 0.854 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -6.493 -4.498 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.306 3.694 4 O -0.429 6.429 5 C -0.107 4.107 6 H 0.198 0.802 7 C -0.140 4.140 8 C -0.733 4.733 9 H 0.224 0.776 10 S 2.677 3.323 11 O -0.955 6.955 12 O -0.963 6.963 13 O -0.623 6.623 14 C 0.018 3.982 15 C -0.108 4.108 16 C -0.201 4.201 17 O -0.341 6.341 18 Si 0.691 3.309 19 C -0.093 4.093 20 C -0.162 4.162 21 Br 0.062 6.938 22 C -0.084 4.084 23 C -0.137 4.137 24 C -0.136 4.136 25 H 0.081 0.919 26 H 0.149 0.851 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.233 0.767 32 H -0.183 1.183 33 H -0.196 1.196 34 H 0.179 0.821 35 H 0.203 0.797 36 H 0.215 0.785 37 H 0.165 0.835 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.496 -6.506 -3.071 7.615 hybrid contribution -0.990 -0.003 -1.597 1.879 sum 1.507 -6.510 -4.668 8.151 Atomic orbital electron populations 1.23559 0.75023 1.05769 1.02446 1.86504 1.24720 1.32675 1.83351 1.24182 0.92867 0.81205 0.71171 1.90701 1.68018 1.37669 1.46560 1.22642 0.85695 1.00117 1.02273 0.80229 1.22791 0.93814 0.96316 1.01055 1.32166 1.09936 1.14788 1.16391 0.77638 1.05960 0.73773 0.76272 0.76300 1.93633 1.52597 1.85988 1.63247 1.93628 1.72460 1.48725 1.81455 1.85756 1.28042 1.84810 1.63703 1.18229 0.81641 0.99407 0.98926 1.20574 0.94827 0.97478 0.97934 1.25496 0.95674 0.89129 1.09831 1.86670 1.62537 1.47251 1.37672 0.92883 0.79796 0.81369 0.76831 1.21040 0.95005 0.98762 0.94527 1.22254 0.94319 0.99464 1.00211 1.96880 1.17062 1.98605 1.81253 1.21504 0.90717 0.97302 0.98901 1.21874 0.99258 0.97705 0.94898 1.22845 0.95097 0.99950 0.95715 0.91900 0.85065 0.92306 0.89708 0.84963 0.90633 0.76675 1.18293 1.19565 0.82086 0.79705 0.78541 0.83548 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.15 10.57 -51.42 -0.54 -0.69 16 3 C 0.46 0.94 7.49 71.24 0.53 1.47 16 4 O -0.54 -5.33 15.65 21.98 0.34 -4.99 16 5 C -0.09 0.59 4.26 -11.01 -0.05 0.54 16 6 H 0.18 -2.66 8.14 -2.39 -0.02 -2.68 16 7 C -0.10 0.46 6.99 31.12 0.22 0.68 16 8 C -0.62 4.36 3.93 31.12 0.12 4.48 16 9 H 0.21 -3.31 5.63 -2.39 -0.01 -3.32 16 10 S 2.58 10.36 4.95 -56.49 -0.28 10.08 16 11 O -0.96 -11.46 17.27 -118.57 -2.05 -13.50 16 12 O -0.96 -7.44 15.08 -118.57 -1.79 -9.23 16 13 O -0.66 -2.31 8.63 -61.67 -0.53 -2.84 16 14 C 0.06 0.07 4.34 22.50 0.10 0.17 16 15 C -0.10 -0.38 3.99 -19.77 -0.08 -0.45 16 16 C -0.09 -0.48 2.42 71.24 0.17 -0.31 16 17 O -0.53 -1.50 11.50 -148.98 -1.71 -3.21 16 18 Si 0.79 3.60 32.36 68.60 2.22 5.82 16 19 C -0.07 -0.05 8.94 22.27 0.20 0.15 16 20 C -0.08 0.17 6.22 22.32 0.14 0.31 16 21 Br -0.02 0.05 33.70 -20.37 -0.69 -0.64 16 22 C -0.06 0.46 9.78 22.27 0.22 0.67 16 23 C -0.12 0.82 8.56 22.36 0.19 1.01 16 24 C -0.10 0.72 7.19 31.12 0.22 0.95 16 25 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 26 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 27 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 28 H 0.08 0.09 7.40 -2.38 -0.02 0.07 16 29 H 0.13 -1.28 8.14 -2.39 -0.02 -1.30 16 30 H 0.08 0.49 6.16 -2.39 -0.01 0.48 16 31 H 0.38 -1.08 8.69 -74.06 -0.64 -1.72 16 32 H -0.26 -2.10 7.11 99.48 0.71 -1.39 16 33 H -0.27 -2.19 7.11 99.48 0.71 -1.48 16 34 H 0.16 -0.15 7.08 -2.91 -0.02 -0.17 16 35 H 0.19 -2.48 8.06 -2.91 -0.02 -2.51 16 36 H 0.20 -3.27 6.59 -2.91 -0.02 -3.29 16 37 H 0.15 -2.20 8.14 -2.38 -0.02 -2.22 16 38 H 0.09 -0.21 7.38 -2.39 -0.02 -0.23 16 Total: 0.00 -28.07 354.39 -1.31 -29.38 By element: Atomic # 1 Polarization: -21.53 SS G_CDS: 0.53 Total: -21.00 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 3.19 Total: 10.82 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -6.28 Total: -34.46 kcal Atomic # 14 Polarization: 3.60 SS G_CDS: 2.22 Total: 5.82 kcal Atomic # 16 Polarization: 10.36 SS G_CDS: -0.28 Total: 10.08 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.64 kcal Total: -28.07 -1.31 -29.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.516 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds