Wall clock time and date at job start Tue Mar 9 2021 14:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47090 * 2 1 4 4 C 1.86304 * 109.47102 * 240.00098 * 2 1 3 5 5 C 1.86297 * 109.47129 * 120.00206 * 2 1 3 6 6 C 1.52997 * 109.47280 * 59.99887 * 5 2 1 7 7 C 1.52996 * 109.47261 * 180.02562 * 6 5 2 8 8 S 1.81403 * 109.47399 * 180.02562 * 7 6 5 9 9 O 1.42097 * 110.54258 * 68.37425 * 8 7 6 10 10 O 1.42096 * 110.54130 * 291.62281 * 8 7 6 11 11 O 1.52199 * 104.44998 * 179.97438 * 8 7 6 12 12 C 1.35919 * 113.99657 * 75.00128 * 11 8 7 13 13 C 1.38708 * 120.04473 * 270.01456 * 12 11 8 14 14 C 1.38165 * 119.95258 * 179.97438 * 13 12 11 15 15 C 1.38324 * 120.04594 * 0.02562 * 14 13 12 16 16 Br 1.89095 * 119.95130 * 180.02562 * 15 14 13 17 17 C 1.38366 * 120.08956 * 359.71711 * 15 14 13 18 18 C 1.38119 * 120.04499 * 0.56165 * 17 15 14 19 19 C 1.50701 * 120.02170 * 179.71903 * 18 17 15 20 20 O 1.42895 * 109.47079 * 254.72640 * 19 18 17 21 21 Si 1.86301 * 109.47149 * 14.72135 * 19 18 17 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 H 1.09000 * 109.47096 * 300.00129 * 1 2 3 26 26 H 1.09000 * 109.46833 * 60.00089 * 1 2 3 27 27 H 1.08994 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47021 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47210 * 299.99680 * 3 2 1 30 30 H 1.09000 * 109.47257 * 59.99969 * 3 2 1 31 31 H 1.09003 * 109.46928 * 300.00212 * 4 2 1 32 32 H 1.08993 * 109.47121 * 59.99568 * 4 2 1 33 33 H 1.09000 * 109.46964 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46857 * 299.99810 * 5 2 1 35 35 H 1.09000 * 109.47292 * 180.02562 * 5 2 1 36 36 H 1.09000 * 109.47238 * 60.00156 * 6 5 2 37 37 H 1.09002 * 109.47063 * 299.99749 * 6 5 2 38 38 H 1.08996 * 109.47588 * 59.99740 * 7 6 5 39 39 H 1.09000 * 109.47057 * 300.00026 * 7 6 5 40 40 H 1.07994 * 120.02405 * 0.02562 * 13 12 11 41 41 H 1.08007 * 119.97598 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.97629 * 180.29567 * 17 15 14 43 43 H 1.09001 * 109.47380 * 134.72037 * 19 18 17 44 44 H 0.96708 * 113.99763 * 299.99687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5211 7 6 2.4835 -3.0418 2.7706 8 16 1.8795 -4.7523 2.7702 9 8 2.4930 -5.4976 1.7274 10 8 0.4720 -4.7841 2.9632 11 8 2.4476 -5.3560 4.0466 12 6 1.8158 -4.9494 5.1793 13 6 2.2570 -3.8202 5.8534 14 6 1.6130 -3.4083 7.0043 15 6 0.5294 -4.1214 7.4846 16 35 -0.3504 -3.5548 9.0596 17 6 0.0845 -5.2449 6.8107 18 6 0.7290 -5.6634 5.6630 19 6 0.2479 -6.8909 4.9330 20 8 1.1482 -7.9735 5.1767 21 14 -1.4525 -7.3485 5.5411 22 1 -2.3882 -6.2234 5.2880 23 1 -1.3983 -7.6288 6.9984 24 1 -1.9264 -8.5584 4.8222 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1206 -1.9059 -1.5212 32 1 2.1207 -0.3645 -2.4111 33 1 3.5740 -0.8786 -1.5209 34 1 2.1207 -0.3644 2.4110 35 1 3.5740 -0.8779 1.5213 36 1 2.3374 -2.8346 0.6311 37 1 0.8840 -2.3207 1.5211 38 1 2.1199 -2.5279 3.6604 39 1 3.5735 -3.0418 2.7710 40 1 3.1027 -3.2630 5.4785 41 1 1.9559 -2.5289 7.5292 42 1 -0.7647 -5.7976 7.1848 43 1 0.2081 -6.6852 3.8633 44 1 2.0545 -7.8047 4.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79519_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:04:11 Heat of formation + Delta-G solvation = -156.708198 kcal Electronic energy + Delta-G solvation = -27441.037214 eV Core-core repulsion = 23463.002214 eV Total energy + Delta-G solvation = -3978.035000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 410.022 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.70864 -39.72715 -38.41972 -37.80717 -37.29702 -36.12373 -33.43554 -33.18917 -30.32660 -29.82122 -28.63000 -28.50110 -28.46404 -27.25574 -24.84096 -23.43742 -23.04115 -21.63521 -19.81750 -19.19717 -18.79232 -18.34263 -17.31338 -17.15321 -17.08460 -16.32751 -15.98498 -15.66983 -15.51134 -15.08393 -14.81723 -14.62753 -14.36785 -14.31306 -14.25222 -14.15707 -13.88356 -13.76761 -13.72603 -13.43526 -13.40680 -13.34452 -13.31377 -13.24765 -13.23575 -13.17872 -13.04360 -12.20486 -12.16119 -12.10925 -11.94632 -11.85928 -11.64223 -11.41994 -11.13849 -10.92769 -10.89422 -10.68354 -10.49951 -10.04802 -1.32677 -0.47810 -0.34291 0.24358 0.78784 1.11435 1.49520 1.52848 1.61945 1.74925 1.76511 1.87460 1.93834 2.35519 2.51348 2.68594 3.06720 3.16427 3.26323 3.40853 3.55716 3.64410 3.69197 3.75417 3.86958 4.05834 4.14703 4.18664 4.34384 4.37888 4.51870 4.57788 4.62617 4.62933 4.63982 4.67411 4.68108 4.69062 4.70200 4.71597 4.78391 5.13108 5.15812 5.38693 5.46719 5.48587 6.43348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.003 2.997 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.406 4.406 6 C -0.102 4.102 7 C -0.645 4.645 8 S 2.577 3.423 9 O -0.917 6.917 10 O -0.943 6.943 11 O -0.664 6.664 12 C 0.090 3.910 13 C -0.120 4.120 14 C -0.070 4.070 15 C -0.070 4.070 16 Br -0.022 7.022 17 C -0.078 4.078 18 C -0.073 4.073 19 C -0.112 4.112 20 O -0.529 6.529 21 Si 1.009 2.991 22 H -0.237 1.237 23 H -0.246 1.246 24 H -0.245 1.245 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.092 0.908 44 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.213 5.346 1.127 5.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.199 2.801 3 C -0.557 4.557 4 C -0.561 4.561 5 C -0.492 4.492 6 C -0.140 4.140 7 C -0.773 4.773 8 S 2.674 3.326 9 O -0.915 6.915 10 O -0.941 6.941 11 O -0.622 6.622 12 C 0.048 3.952 13 C -0.141 4.141 14 C -0.089 4.089 15 C -0.151 4.151 16 Br 0.064 6.936 17 C -0.098 4.098 18 C -0.077 4.077 19 C -0.219 4.219 20 O -0.335 6.335 21 Si 0.826 3.174 22 H -0.160 1.160 23 H -0.169 1.169 24 H -0.168 1.168 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.109 0.891 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.599 4.301 2.045 4.800 hybrid contribution 1.923 0.963 -0.789 2.291 sum 1.323 5.264 1.255 5.571 Atomic orbital electron populations 1.26175 1.20645 1.04623 1.04640 0.79318 0.67286 0.67042 0.66421 1.26105 1.06245 1.18796 1.04547 1.26182 1.06382 1.08174 1.15406 1.26166 1.06301 1.00295 1.16398 1.20993 1.01782 0.97081 0.94194 1.30912 1.13719 1.23807 1.08891 1.06092 0.74951 0.77665 0.73925 1.93685 1.77491 1.67747 1.52600 1.93656 1.31201 1.86021 1.83268 1.85743 1.70153 1.76523 1.29808 1.17925 0.94022 0.96254 0.86977 1.21398 1.00832 0.95656 0.96164 1.21094 0.93320 0.99654 0.94870 1.22034 0.98749 0.98252 0.96023 1.96878 1.77242 1.89585 1.29881 1.21103 1.00031 0.95311 0.93308 1.20443 0.94068 0.97517 0.95666 1.25714 1.06735 0.86139 1.03357 1.86742 1.23043 1.37958 1.85756 0.84557 0.70994 0.81598 0.80269 1.15954 1.16942 1.16780 0.91151 0.91060 0.91118 0.91242 0.91109 0.91246 0.91116 0.91055 0.91131 0.89982 0.89948 0.89849 0.89778 0.84494 0.84053 0.82796 0.82751 0.83164 0.89059 0.78046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.99 8.65 101.05 0.87 1.86 16 2 Si 1.00 -3.60 12.19 -169.99 -2.07 -5.67 16 3 C -0.45 1.07 8.65 101.05 0.87 1.94 16 4 C -0.45 0.94 8.65 101.05 0.87 1.81 16 5 C -0.41 1.41 4.45 37.16 0.17 1.58 16 6 C -0.10 0.25 4.59 -26.74 -0.12 0.12 16 7 C -0.65 1.88 5.46 37.16 0.20 2.08 16 8 S 2.58 1.88 4.93 -107.50 -0.53 1.35 16 9 O -0.92 -3.73 18.09 -67.04 -1.21 -4.94 16 10 O -0.94 -2.26 14.25 -67.03 -0.96 -3.22 16 11 O -0.66 -0.21 9.05 -51.81 -0.47 -0.68 16 12 C 0.09 0.02 4.74 -39.22 -0.19 -0.17 16 13 C -0.12 0.28 8.46 -39.43 -0.33 -0.05 16 14 C -0.07 0.16 9.78 -39.58 -0.39 -0.23 16 15 C -0.07 0.03 6.22 -39.50 -0.25 -0.22 16 16 Br -0.02 0.01 33.70 -68.01 -2.29 -2.28 16 17 C -0.08 -0.05 8.40 -39.58 -0.33 -0.38 16 18 C -0.07 -0.11 4.68 -104.48 -0.49 -0.60 16 19 C -0.11 -0.25 2.19 36.01 0.08 -0.17 16 20 O -0.53 -1.25 12.65 -35.23 -0.45 -1.70 16 21 Si 1.01 1.43 25.73 -169.99 -4.37 -2.94 16 22 H -0.24 -0.19 7.11 56.52 0.40 0.21 16 23 H -0.25 -0.21 6.74 56.52 0.38 0.17 16 24 H -0.24 -0.51 7.11 56.52 0.40 -0.11 16 25 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.15 7.79 -51.93 -0.40 -0.55 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.08 -0.34 7.96 -51.93 -0.41 -0.75 16 35 H 0.08 -0.33 7.96 -51.93 -0.41 -0.74 16 36 H 0.08 -0.24 7.79 -51.93 -0.40 -0.65 16 37 H 0.08 -0.27 7.79 -51.93 -0.40 -0.67 16 38 H 0.14 -0.68 6.60 -51.93 -0.34 -1.02 16 39 H 0.14 -0.69 8.14 -51.92 -0.42 -1.11 16 40 H 0.15 -0.87 7.49 -52.49 -0.39 -1.26 16 41 H 0.15 -0.73 8.06 -52.48 -0.42 -1.15 16 42 H 0.15 -0.03 4.89 -52.48 -0.26 -0.29 16 43 H 0.09 0.21 5.44 -51.93 -0.28 -0.07 16 44 H 0.37 0.04 8.61 45.56 0.39 0.43 16 LS Contribution 388.54 15.07 5.86 5.86 Total: 0.00 -7.27 388.54 -11.41 -18.68 By element: Atomic # 1 Polarization: -6.15 SS G_CDS: -5.88 Total: -12.03 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 0.97 Total: 7.58 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -3.08 Total: -10.54 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: -6.45 Total: -8.61 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -0.53 Total: 1.35 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.29 Total: -2.28 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -7.27 -11.41 -18.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.030 kcal (2) G-P(sol) polarization free energy of solvation -7.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds