Wall clock time and date at job start Tue Mar 9 2021 14:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47090 * 2 1 4 4 C 1.86304 * 109.47102 * 240.00098 * 2 1 3 5 5 C 1.86297 * 109.47129 * 120.00206 * 2 1 3 6 6 C 1.52997 * 109.47280 * 59.99887 * 5 2 1 7 7 C 1.52996 * 109.47261 * 180.02562 * 6 5 2 8 8 S 1.81403 * 109.47399 * 180.02562 * 7 6 5 9 9 O 1.42097 * 110.54258 * 68.37425 * 8 7 6 10 10 O 1.42096 * 110.54130 * 291.62281 * 8 7 6 11 11 O 1.52199 * 104.44998 * 179.97438 * 8 7 6 12 12 C 1.35919 * 113.99657 * 75.00128 * 11 8 7 13 13 C 1.38708 * 120.04473 * 270.01456 * 12 11 8 14 14 C 1.38165 * 119.95258 * 179.97438 * 13 12 11 15 15 C 1.38324 * 120.04594 * 0.02562 * 14 13 12 16 16 Br 1.89095 * 119.95130 * 180.02562 * 15 14 13 17 17 C 1.38366 * 120.08956 * 359.71711 * 15 14 13 18 18 C 1.38119 * 120.04499 * 0.56165 * 17 15 14 19 19 C 1.50701 * 120.02170 * 179.71903 * 18 17 15 20 20 O 1.42895 * 109.47079 * 254.72640 * 19 18 17 21 21 Si 1.86301 * 109.47149 * 14.72135 * 19 18 17 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 H 1.09000 * 109.47096 * 300.00129 * 1 2 3 26 26 H 1.09000 * 109.46833 * 60.00089 * 1 2 3 27 27 H 1.08994 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47021 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47210 * 299.99680 * 3 2 1 30 30 H 1.09000 * 109.47257 * 59.99969 * 3 2 1 31 31 H 1.09003 * 109.46928 * 300.00212 * 4 2 1 32 32 H 1.08993 * 109.47121 * 59.99568 * 4 2 1 33 33 H 1.09000 * 109.46964 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46857 * 299.99810 * 5 2 1 35 35 H 1.09000 * 109.47292 * 180.02562 * 5 2 1 36 36 H 1.09000 * 109.47238 * 60.00156 * 6 5 2 37 37 H 1.09002 * 109.47063 * 299.99749 * 6 5 2 38 38 H 1.08996 * 109.47588 * 59.99740 * 7 6 5 39 39 H 1.09000 * 109.47057 * 300.00026 * 7 6 5 40 40 H 1.07994 * 120.02405 * 0.02562 * 13 12 11 41 41 H 1.08007 * 119.97598 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.97629 * 180.29567 * 17 15 14 43 43 H 1.09001 * 109.47380 * 134.72037 * 19 18 17 44 44 H 0.96708 * 113.99763 * 299.99687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5211 7 6 2.4835 -3.0418 2.7706 8 16 1.8795 -4.7523 2.7702 9 8 2.4930 -5.4976 1.7274 10 8 0.4720 -4.7841 2.9632 11 8 2.4476 -5.3560 4.0466 12 6 1.8158 -4.9494 5.1793 13 6 2.2570 -3.8202 5.8534 14 6 1.6130 -3.4083 7.0043 15 6 0.5294 -4.1214 7.4846 16 35 -0.3504 -3.5548 9.0596 17 6 0.0845 -5.2449 6.8107 18 6 0.7290 -5.6634 5.6630 19 6 0.2479 -6.8909 4.9330 20 8 1.1482 -7.9735 5.1767 21 14 -1.4525 -7.3485 5.5411 22 1 -2.3882 -6.2234 5.2880 23 1 -1.3983 -7.6288 6.9984 24 1 -1.9264 -8.5584 4.8222 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1206 -1.9059 -1.5212 32 1 2.1207 -0.3645 -2.4111 33 1 3.5740 -0.8786 -1.5209 34 1 2.1207 -0.3644 2.4110 35 1 3.5740 -0.8779 1.5213 36 1 2.3374 -2.8346 0.6311 37 1 0.8840 -2.3207 1.5211 38 1 2.1199 -2.5279 3.6604 39 1 3.5735 -3.0418 2.7710 40 1 3.1027 -3.2630 5.4785 41 1 1.9559 -2.5289 7.5292 42 1 -0.7647 -5.7976 7.1848 43 1 0.2081 -6.6852 3.8633 44 1 2.0545 -7.8047 4.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79519_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:04:11 Heat of formation + Delta-G solvation = -152.027094 kcal Electronic energy + Delta-G solvation = -27440.834226 eV Core-core repulsion = 23463.002214 eV Total energy + Delta-G solvation = -3977.832012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 410.022 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.64217 -39.65258 -38.49812 -37.90079 -37.37457 -35.87273 -33.37993 -33.07774 -30.23819 -29.60749 -28.39647 -28.30234 -28.23454 -27.26465 -24.71639 -23.41037 -22.80300 -21.54862 -19.78286 -19.19857 -18.76378 -18.39153 -17.26616 -17.12007 -16.95401 -16.24786 -15.94128 -15.61504 -15.47331 -14.94682 -14.71595 -14.54784 -14.36321 -14.13981 -14.02351 -13.95907 -13.87129 -13.58212 -13.54740 -13.44382 -13.38478 -13.31955 -13.15186 -13.10363 -13.04370 -12.97297 -12.91069 -12.30800 -12.06143 -11.99047 -11.82591 -11.79036 -11.62480 -11.40403 -11.24061 -10.70403 -10.67673 -10.43067 -10.39632 -9.96055 -1.27568 -0.39716 -0.22553 0.33390 0.83521 0.99829 1.35218 1.40531 1.80118 1.92710 1.98051 2.01374 2.02381 2.41960 2.72790 2.74816 3.12523 3.29713 3.48105 3.60021 3.65455 3.75096 3.82686 3.86167 4.14216 4.17823 4.25562 4.41898 4.43639 4.64209 4.71468 4.77088 4.79386 4.81125 4.81834 4.84271 4.87087 4.87977 4.88432 4.89729 5.11144 5.29889 5.46902 5.60949 5.67217 5.67856 6.37284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.474 4.474 2 Si 1.068 2.932 3 C -0.464 4.464 4 C -0.476 4.476 5 C -0.407 4.407 6 C -0.122 4.122 7 C -0.623 4.623 8 S 2.566 3.434 9 O -0.964 6.964 10 O -0.970 6.970 11 O -0.665 6.665 12 C 0.076 3.924 13 C -0.109 4.109 14 C -0.061 4.061 15 C -0.077 4.077 16 Br -0.025 7.025 17 C -0.092 4.092 18 C -0.095 4.095 19 C -0.122 4.122 20 O -0.541 6.541 21 Si 1.015 2.985 22 H -0.230 1.230 23 H -0.238 1.238 24 H -0.261 1.261 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.195 0.805 41 H 0.185 0.815 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 7.540 2.380 8.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.260 2.740 3 C -0.570 4.570 4 C -0.582 4.582 5 C -0.493 4.493 6 C -0.161 4.161 7 C -0.754 4.754 8 S 2.668 3.332 9 O -0.963 6.963 10 O -0.969 6.969 11 O -0.624 6.624 12 C 0.034 3.966 13 C -0.129 4.129 14 C -0.081 4.081 15 C -0.158 4.158 16 Br 0.061 6.939 17 C -0.112 4.112 18 C -0.098 4.098 19 C -0.229 4.229 20 O -0.348 6.348 21 Si 0.832 3.168 22 H -0.153 1.153 23 H -0.162 1.162 24 H -0.185 1.185 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.212 0.788 41 H 0.202 0.798 42 H 0.167 0.833 43 H 0.101 0.899 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.782 6.459 3.277 7.285 hybrid contribution 1.490 0.343 -1.204 1.946 sum 2.271 6.802 2.073 7.465 Atomic orbital electron populations 1.26437 1.22727 1.04345 1.04457 0.78310 0.65016 0.65405 0.65242 1.26281 1.06478 1.19888 1.04363 1.26469 1.06643 1.08347 1.16722 1.26169 1.07230 0.99137 1.16773 1.21231 1.02427 0.97973 0.94481 1.30780 1.15411 1.19157 1.10080 1.06232 0.74364 0.79310 0.73280 1.93622 1.77961 1.70305 1.54365 1.93616 1.32840 1.87038 1.83364 1.85706 1.69689 1.77228 1.29783 1.18202 0.94080 0.97227 0.87111 1.21840 1.01226 0.94457 0.95377 1.21499 0.92065 0.99909 0.94585 1.22164 0.99476 0.98241 0.95935 1.96875 1.77579 1.89426 1.30055 1.21140 1.00380 0.96133 0.93543 1.20420 0.95336 0.97732 0.96341 1.25770 1.07085 0.86850 1.03169 1.86700 1.23638 1.38596 1.85895 0.84500 0.70924 0.80992 0.80408 1.15283 1.16177 1.18528 0.90886 0.91741 0.91453 0.91069 0.91832 0.90951 0.91516 0.91715 0.91016 0.88381 0.88621 0.89889 0.89440 0.81596 0.81226 0.78799 0.79751 0.83324 0.89947 0.77297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.09 8.65 113.37 0.98 3.07 16 2 Si 1.07 -8.69 12.19 68.60 0.84 -7.85 16 3 C -0.46 2.65 8.65 113.37 0.98 3.63 16 4 C -0.48 1.87 8.65 113.37 0.98 2.85 16 5 C -0.41 3.96 4.45 71.98 0.32 4.28 16 6 C -0.12 0.80 4.59 30.59 0.14 0.94 16 7 C -0.62 5.19 5.46 71.98 0.39 5.58 16 8 S 2.57 4.65 4.93 -56.49 -0.28 4.37 16 9 O -0.96 -9.44 18.09 -118.57 -2.15 -11.59 16 10 O -0.97 -5.91 14.25 -118.57 -1.69 -7.60 16 11 O -0.67 -0.47 9.05 -61.73 -0.56 -1.03 16 12 C 0.08 -0.01 4.74 22.50 0.11 0.09 16 13 C -0.11 0.81 8.46 22.36 0.19 1.00 16 14 C -0.06 0.44 9.78 22.27 0.22 0.65 16 15 C -0.08 0.14 6.22 22.32 0.14 0.28 16 16 Br -0.03 0.04 33.70 -20.37 -0.69 -0.65 16 17 C -0.09 -0.15 8.40 22.27 0.19 0.04 16 18 C -0.09 -0.34 4.68 -19.77 -0.09 -0.43 16 19 C -0.12 -0.78 2.19 71.24 0.16 -0.62 16 20 O -0.54 -3.69 12.65 -148.98 -1.89 -5.57 16 21 Si 1.01 4.72 25.73 68.60 1.77 6.49 16 22 H -0.23 -0.72 7.11 99.48 0.71 -0.02 16 23 H -0.24 -0.72 6.74 99.48 0.67 -0.05 16 24 H -0.26 -1.77 7.11 99.48 0.71 -1.06 16 25 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 26 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 27 H 0.07 -0.25 7.79 -2.39 -0.02 -0.27 16 28 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 29 H 0.06 -0.26 7.96 -2.39 -0.02 -0.28 16 30 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 31 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 32 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 34 H 0.10 -1.20 7.96 -2.39 -0.02 -1.22 16 35 H 0.10 -1.11 7.96 -2.39 -0.02 -1.13 16 36 H 0.08 -0.53 7.79 -2.39 -0.02 -0.55 16 37 H 0.09 -0.64 7.79 -2.39 -0.02 -0.65 16 38 H 0.17 -2.32 6.60 -2.39 -0.02 -2.34 16 39 H 0.17 -2.30 8.14 -2.39 -0.02 -2.32 16 40 H 0.19 -3.13 7.49 -2.91 -0.02 -3.15 16 41 H 0.19 -2.46 8.06 -2.91 -0.02 -2.48 16 42 H 0.15 0.10 4.89 -2.91 -0.01 0.08 16 43 H 0.08 0.62 5.44 -2.39 -0.01 0.60 16 44 H 0.38 0.90 8.61 -74.05 -0.64 0.26 16 Total: 0.00 -20.06 388.54 1.15 -18.91 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: 1.09 Total: -16.84 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 4.70 Total: 21.37 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -6.28 Total: -25.79 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.60 Total: -1.36 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -0.28 Total: 4.37 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -0.69 Total: -0.65 kcal Total: -20.06 1.15 -18.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.119 kcal (2) G-P(sol) polarization free energy of solvation -20.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds