Wall clock time and date at job start Tue Mar 9 2021 14:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45201 * 109.47057 * 2 1 4 4 C 1.34227 * 116.99678 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00020 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.46844 * 299.99756 * 6 4 3 8 8 C 1.53001 * 109.47193 * 59.99969 * 6 4 3 9 9 C 1.52991 * 109.47387 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47024 * 299.99877 * 9 8 6 11 11 F 1.39905 * 109.46946 * 179.97438 * 10 9 8 12 12 C 1.52991 * 109.47313 * 299.99638 * 10 9 8 13 13 S 1.81395 * 109.47420 * 179.97438 * 12 10 9 14 14 O 1.42101 * 110.54310 * 291.62789 * 13 12 10 15 15 O 1.42104 * 110.54334 * 68.37900 * 13 12 10 16 16 O 1.52200 * 104.45301 * 180.02562 * 13 12 10 17 17 C 1.35917 * 114.00055 * 76.42021 * 16 13 12 18 18 C 1.38698 * 120.04885 * 260.96371 * 17 16 13 19 19 C 1.50713 * 120.02140 * 0.02972 * 18 17 16 20 20 O 1.42898 * 109.46817 * 266.28636 * 19 18 17 21 21 Si 1.86300 * 109.46951 * 146.28623 * 19 18 17 22 22 C 1.38163 * 119.96018 * 180.02562 * 18 17 16 23 23 C 1.38324 * 120.04075 * 0.02562 * 22 18 17 24 24 Br 1.89095 * 119.95501 * 179.97438 * 23 22 18 25 25 C 1.38368 * 120.09133 * 359.97438 * 23 22 18 26 26 C 1.38124 * 120.04387 * 359.72408 * 25 23 22 27 27 C 1.53001 * 109.47097 * 60.00384 * 10 9 8 28 28 C 1.53001 * 109.47228 * 179.97438 * 6 4 3 29 29 H 1.08993 * 109.47466 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46897 * 300.00312 * 1 2 3 31 31 H 1.08997 * 109.46922 * 59.99517 * 1 2 3 32 32 H 1.08994 * 109.46995 * 240.00073 * 2 1 3 33 33 H 1.08994 * 109.46935 * 119.99942 * 2 1 3 34 34 H 1.09007 * 109.46629 * 299.99958 * 8 6 4 35 35 H 1.09001 * 109.46953 * 59.99869 * 8 6 4 36 36 H 1.09001 * 109.47288 * 59.99943 * 9 8 6 37 37 H 1.08999 * 109.47594 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47635 * 300.00280 * 12 10 9 39 39 H 1.09005 * 109.46806 * 59.99890 * 12 10 9 40 40 H 1.08996 * 109.46954 * 26.28034 * 19 18 17 41 41 H 0.96701 * 114.00483 * 65.66763 * 20 19 18 42 42 H 1.48496 * 109.99749 * 299.99570 * 21 19 18 43 43 H 1.48497 * 110.00216 * 61.31976 * 21 19 18 44 44 H 1.07994 * 119.98221 * 180.02562 * 22 18 17 45 45 H 1.07998 * 119.97891 * 180.02562 * 25 23 22 46 46 H 1.08007 * 120.02021 * 180.27796 * 26 25 23 47 47 H 1.08999 * 109.47383 * 180.02562 * 27 10 9 48 48 H 1.08999 * 109.47757 * 59.99616 * 27 10 9 49 49 H 1.08999 * 109.47130 * 299.99729 * 28 6 4 50 50 H 1.09000 * 109.46776 * 59.99668 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9209 2.9374 0.0000 7 1 3.5845 3.4700 -0.8895 8 6 3.4499 3.6836 1.2499 9 6 4.0342 5.0976 1.2502 10 6 5.5622 5.0180 1.2492 11 9 6.0965 6.3110 1.2488 12 6 6.0348 4.2707 2.4977 13 16 7.8463 4.1757 2.4961 14 8 8.3001 3.3249 1.4522 15 8 8.4134 5.4642 2.6898 16 8 8.1881 3.4190 3.7716 17 6 7.9732 2.0791 3.6940 18 6 6.8139 1.5300 4.2215 19 6 5.7908 2.4187 4.8808 20 8 6.0346 2.4630 6.2882 21 14 4.0844 1.7399 4.5673 22 6 6.5976 0.1677 4.1421 23 6 7.5365 -0.6485 3.5374 24 35 7.2383 -2.5127 3.4307 25 6 8.6937 -0.1026 3.0105 26 6 8.9108 1.2595 3.0824 27 6 6.0331 4.2718 -0.0008 28 6 5.4488 2.8572 -0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3614 3.7407 1.2504 35 1 3.7863 3.1509 2.1394 36 1 3.6975 5.6301 0.3607 37 1 3.6984 5.6294 2.1404 38 1 5.6993 4.8023 3.3882 39 1 5.6185 3.2633 2.4975 40 1 5.8633 3.4247 4.4677 41 1 6.8700 2.8861 6.5295 42 1 3.8186 1.6888 3.1072 43 1 3.9626 0.3810 5.1537 44 1 5.6949 -0.2602 4.5523 45 1 9.4254 -0.7415 2.5385 46 1 9.8121 1.6857 2.6670 47 1 7.1216 4.2147 -0.0014 48 1 5.6964 4.8042 -0.8903 49 1 5.7848 2.3248 0.8896 50 1 5.7846 2.3254 -0.8903 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79519_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:04:35 Heat of formation + Delta-G solvation = -225.414428 kcal Electronic energy + Delta-G solvation = -43225.579987 eV Core-core repulsion = 37694.888885 eV Total energy + Delta-G solvation = -5530.691101 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 481.043 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.11993 -42.79365 -41.88492 -39.91147 -39.70492 -38.53385 -37.95850 -37.63705 -37.40145 -33.88708 -33.46166 -33.14428 -32.58321 -32.32965 -30.39510 -29.64533 -27.33384 -25.50683 -24.90869 -24.40057 -23.75815 -23.44198 -22.13689 -21.78246 -20.70914 -19.94456 -19.32958 -18.89788 -18.72462 -18.66065 -18.06346 -17.71577 -17.52434 -17.39997 -17.23868 -16.87385 -16.43790 -16.25138 -16.05879 -15.78528 -15.59492 -15.47473 -15.25950 -15.04474 -14.71287 -14.61535 -14.56017 -14.34376 -14.20573 -14.10735 -13.91336 -13.87494 -13.73344 -13.46860 -13.36590 -13.31286 -13.25202 -13.10441 -13.08563 -12.94811 -12.80084 -12.75668 -12.63691 -12.17053 -12.14709 -11.99358 -11.71887 -11.64966 -11.59917 -11.52170 -11.41658 -11.38332 -11.30881 -10.58033 -10.10412 -5.22655 -1.47244 -0.55224 -0.36461 0.23213 0.67195 0.89217 1.08990 1.24647 1.51142 1.61211 1.84716 2.16456 2.47109 2.62404 2.87776 2.89400 2.94564 3.13618 3.17235 3.27109 3.43842 3.46066 3.47929 3.51228 3.56614 3.62756 3.74280 3.82184 3.84898 3.86862 3.91603 3.94070 3.98573 4.03192 4.12166 4.20564 4.31068 4.34354 4.41345 4.55089 4.57104 4.61495 4.62419 4.63852 4.65457 4.70453 4.72162 4.77755 4.86718 4.94135 4.99811 5.13628 5.38166 6.21684 6.65319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.464 3.536 5 O -0.500 6.500 6 C -0.087 4.087 7 H 0.120 0.880 8 C -0.126 4.126 9 C -0.127 4.127 10 C 0.142 3.858 11 F -0.188 7.188 12 C -0.702 4.702 13 S 2.590 3.410 14 O -0.934 6.934 15 O -0.899 6.899 16 O -0.658 6.658 17 C 0.082 3.918 18 C -0.113 4.113 19 C -0.096 4.096 20 O -0.522 6.522 21 Si 0.731 3.269 22 C -0.074 4.074 23 C -0.069 4.069 24 Br -0.020 7.020 25 C -0.066 4.066 26 C -0.075 4.075 27 C -0.170 4.170 28 C -0.101 4.101 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.374 0.626 42 H -0.229 1.229 43 H -0.238 1.238 44 H 0.151 0.849 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.072 0.928 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 -0.487 0.097 6.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.306 3.694 5 O -0.387 6.387 6 C -0.106 4.106 7 H 0.138 0.862 8 C -0.163 4.163 9 C -0.166 4.166 10 C 0.122 3.878 11 F -0.168 7.168 12 C -0.826 4.826 13 S 2.683 3.317 14 O -0.932 6.932 15 O -0.897 6.897 16 O -0.616 6.616 17 C 0.040 3.960 18 C -0.116 4.116 19 C -0.204 4.204 20 O -0.327 6.327 21 Si 0.628 3.372 22 C -0.093 4.093 23 C -0.150 4.150 24 Br 0.066 6.934 25 C -0.086 4.086 26 C -0.096 4.096 27 C -0.208 4.208 28 C -0.139 4.139 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.180 0.820 39 H 0.168 0.832 40 H 0.090 0.910 41 H 0.223 0.777 42 H -0.153 1.153 43 H -0.162 1.162 44 H 0.169 0.831 45 H 0.174 0.826 46 H 0.176 0.824 47 H 0.117 0.883 48 H 0.122 0.878 49 H 0.091 0.909 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.214 -2.201 -0.305 6.600 hybrid contribution 1.316 0.479 -0.006 1.400 sum -4.898 -1.722 -0.311 5.202 Atomic orbital electron populations 1.21825 0.92159 1.03344 1.03736 1.23100 0.95709 0.79781 1.02748 1.86495 1.24183 1.32796 1.83774 1.23606 0.80871 0.92433 0.72506 1.90708 1.60409 1.42955 1.44664 1.21232 0.96524 0.90405 1.02456 0.86226 1.21860 1.02878 0.94785 0.96777 1.22062 0.90872 0.97916 1.05715 1.20435 0.96426 0.78580 0.92324 1.93014 1.87496 1.38979 1.97359 1.31911 1.30448 1.11705 1.08535 1.05815 0.77167 0.75211 0.73467 1.93683 1.77734 1.65733 1.56051 1.93714 1.73758 1.39121 1.83151 1.85769 1.86125 1.26166 1.63575 1.17937 0.96057 0.77594 1.04389 1.20449 0.95152 0.95313 1.00716 1.25777 1.08585 1.00783 0.85226 1.86761 1.44463 1.83308 1.18193 0.93335 0.79146 0.83352 0.81347 1.21017 0.99375 0.91448 0.97480 1.22079 0.97664 0.92600 1.02614 1.96875 1.96425 1.02729 1.97386 1.21211 0.96021 0.94416 0.96980 1.21502 0.99051 0.93006 0.95992 1.22635 1.03835 0.96574 0.97735 1.21431 0.91488 0.95736 1.05224 0.89975 0.91281 0.91277 0.91020 0.91241 0.88459 0.90517 0.88709 0.88780 0.81985 0.83246 0.91022 0.77722 1.15334 1.16167 0.83127 0.82587 0.82382 0.88286 0.87826 0.90927 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 10.29 37.16 0.38 0.77 16 2 C 0.06 -0.03 6.19 37.16 0.23 0.20 16 3 O -0.36 -0.17 10.12 -39.25 -0.40 -0.57 16 4 C 0.46 0.53 7.26 36.01 0.26 0.79 16 5 O -0.50 -2.02 15.73 -18.75 -0.29 -2.32 16 6 C -0.09 0.14 2.63 -91.77 -0.24 -0.10 16 7 H 0.12 -0.43 8.14 -51.93 -0.42 -0.85 16 8 C -0.13 0.39 4.86 -26.74 -0.13 0.26 16 9 C -0.13 0.44 5.19 -26.74 -0.14 0.30 16 10 C 0.14 -0.15 1.10 -90.62 -0.10 -0.25 16 11 F -0.19 -0.26 16.08 2.25 0.04 -0.23 16 12 C -0.70 0.89 2.65 37.15 0.10 0.99 16 13 S 2.59 4.96 4.52 -107.50 -0.49 4.48 16 14 O -0.93 -2.51 13.25 -67.04 -0.89 -3.40 16 15 O -0.90 -4.83 17.61 -67.03 -1.18 -6.01 16 16 O -0.66 -0.85 9.21 -51.80 -0.48 -1.33 16 17 C 0.08 0.09 4.93 -39.23 -0.19 -0.10 16 18 C -0.11 -0.06 4.50 -104.47 -0.47 -0.53 16 19 C -0.10 0.10 1.97 36.01 0.07 0.17 16 20 O -0.52 0.32 12.63 -35.23 -0.45 -0.12 16 21 Si 0.73 -1.32 29.05 -169.99 -4.94 -6.26 16 22 C -0.07 -0.07 8.39 -39.58 -0.33 -0.40 16 23 C -0.07 -0.06 6.22 -39.50 -0.25 -0.31 16 24 Br -0.02 -0.02 33.70 -68.01 -2.29 -2.31 16 25 C -0.07 0.00 9.78 -39.58 -0.39 -0.39 16 26 C -0.07 -0.05 8.51 -39.44 -0.34 -0.38 16 27 C -0.17 0.17 4.71 -26.70 -0.13 0.04 16 28 C -0.10 0.06 4.22 -26.70 -0.11 -0.06 16 29 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 30 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 31 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 32 H 0.07 -0.02 8.13 -51.93 -0.42 -0.44 16 33 H 0.07 -0.02 8.13 -51.93 -0.42 -0.45 16 34 H 0.10 -0.40 8.11 -51.93 -0.42 -0.83 16 35 H 0.08 -0.23 3.17 -51.93 -0.16 -0.39 16 36 H 0.09 -0.41 8.14 -51.93 -0.42 -0.84 16 37 H 0.09 -0.44 8.14 -51.93 -0.42 -0.87 16 38 H 0.16 -0.71 6.97 -51.92 -0.36 -1.07 16 39 H 0.15 -0.33 2.38 -51.92 -0.12 -0.45 16 40 H 0.07 -0.21 3.56 -51.93 -0.18 -0.40 16 41 H 0.37 -1.09 9.11 45.56 0.42 -0.67 16 42 H -0.23 0.34 5.29 56.52 0.30 0.64 16 43 H -0.24 -0.08 6.45 56.52 0.36 0.28 16 44 H 0.15 0.08 5.59 -52.49 -0.29 -0.21 16 45 H 0.16 -0.33 8.06 -52.49 -0.42 -0.75 16 46 H 0.16 -0.10 7.87 -52.48 -0.41 -0.52 16 47 H 0.10 0.01 5.46 -51.93 -0.28 -0.27 16 48 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 49 H 0.07 0.01 6.39 -51.93 -0.33 -0.32 16 50 H 0.09 -0.02 8.10 -51.93 -0.42 -0.44 16 LS Contribution 415.08 15.07 6.26 6.26 Total: 0.00 -9.27 415.08 -13.02 -22.29 By element: Atomic # 1 Polarization: -5.32 SS G_CDS: -6.15 Total: -11.46 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.77 Total: 0.99 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -3.68 Total: -13.75 kcal Atomic # 9 Polarization: -0.26 SS G_CDS: 0.04 Total: -0.23 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -4.94 Total: -6.26 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -0.49 Total: 4.48 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.29 Total: -2.31 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -9.27 -13.02 -22.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.120 kcal (2) G-P(sol) polarization free energy of solvation -9.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds