Wall clock time and date at job start Tue Mar 9 2021 14:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45201 * 109.47057 * 2 1 4 4 C 1.34227 * 116.99678 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00020 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.46844 * 299.99756 * 6 4 3 8 8 C 1.53001 * 109.47193 * 59.99969 * 6 4 3 9 9 C 1.52991 * 109.47387 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47024 * 299.99877 * 9 8 6 11 11 F 1.39905 * 109.46946 * 179.97438 * 10 9 8 12 12 C 1.52991 * 109.47313 * 299.99638 * 10 9 8 13 13 S 1.81395 * 109.47420 * 179.97438 * 12 10 9 14 14 O 1.42101 * 110.54310 * 291.62789 * 13 12 10 15 15 O 1.42104 * 110.54334 * 68.37900 * 13 12 10 16 16 O 1.52200 * 104.45301 * 180.02562 * 13 12 10 17 17 C 1.35917 * 114.00055 * 76.42021 * 16 13 12 18 18 C 1.38698 * 120.04885 * 260.96371 * 17 16 13 19 19 C 1.50713 * 120.02140 * 0.02972 * 18 17 16 20 20 O 1.42898 * 109.46817 * 266.28636 * 19 18 17 21 21 Si 1.86300 * 109.46951 * 146.28623 * 19 18 17 22 22 C 1.38163 * 119.96018 * 180.02562 * 18 17 16 23 23 C 1.38324 * 120.04075 * 0.02562 * 22 18 17 24 24 Br 1.89095 * 119.95501 * 179.97438 * 23 22 18 25 25 C 1.38368 * 120.09133 * 359.97438 * 23 22 18 26 26 C 1.38124 * 120.04387 * 359.72408 * 25 23 22 27 27 C 1.53001 * 109.47097 * 60.00384 * 10 9 8 28 28 C 1.53001 * 109.47228 * 179.97438 * 6 4 3 29 29 H 1.08993 * 109.47466 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46897 * 300.00312 * 1 2 3 31 31 H 1.08997 * 109.46922 * 59.99517 * 1 2 3 32 32 H 1.08994 * 109.46995 * 240.00073 * 2 1 3 33 33 H 1.08994 * 109.46935 * 119.99942 * 2 1 3 34 34 H 1.09007 * 109.46629 * 299.99958 * 8 6 4 35 35 H 1.09001 * 109.46953 * 59.99869 * 8 6 4 36 36 H 1.09001 * 109.47288 * 59.99943 * 9 8 6 37 37 H 1.08999 * 109.47594 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47635 * 300.00280 * 12 10 9 39 39 H 1.09005 * 109.46806 * 59.99890 * 12 10 9 40 40 H 1.08996 * 109.46954 * 26.28034 * 19 18 17 41 41 H 0.96701 * 114.00483 * 65.66763 * 20 19 18 42 42 H 1.48496 * 109.99749 * 299.99570 * 21 19 18 43 43 H 1.48497 * 110.00216 * 61.31976 * 21 19 18 44 44 H 1.07994 * 119.98221 * 180.02562 * 22 18 17 45 45 H 1.07998 * 119.97891 * 180.02562 * 25 23 22 46 46 H 1.08007 * 120.02021 * 180.27796 * 26 25 23 47 47 H 1.08999 * 109.47383 * 180.02562 * 27 10 9 48 48 H 1.08999 * 109.47757 * 59.99616 * 27 10 9 49 49 H 1.08999 * 109.47130 * 299.99729 * 28 6 4 50 50 H 1.09000 * 109.46776 * 59.99668 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9209 2.9374 0.0000 7 1 3.5845 3.4700 -0.8895 8 6 3.4499 3.6836 1.2499 9 6 4.0342 5.0976 1.2502 10 6 5.5622 5.0180 1.2492 11 9 6.0965 6.3110 1.2488 12 6 6.0348 4.2707 2.4977 13 16 7.8463 4.1757 2.4961 14 8 8.3001 3.3249 1.4522 15 8 8.4134 5.4642 2.6898 16 8 8.1881 3.4190 3.7716 17 6 7.9732 2.0791 3.6940 18 6 6.8139 1.5300 4.2215 19 6 5.7908 2.4187 4.8808 20 8 6.0346 2.4630 6.2882 21 14 4.0844 1.7399 4.5673 22 6 6.5976 0.1677 4.1421 23 6 7.5365 -0.6485 3.5374 24 35 7.2383 -2.5127 3.4307 25 6 8.6937 -0.1026 3.0105 26 6 8.9108 1.2595 3.0824 27 6 6.0331 4.2718 -0.0008 28 6 5.4488 2.8572 -0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3614 3.7407 1.2504 35 1 3.7863 3.1509 2.1394 36 1 3.6975 5.6301 0.3607 37 1 3.6984 5.6294 2.1404 38 1 5.6993 4.8023 3.3882 39 1 5.6185 3.2633 2.4975 40 1 5.8633 3.4247 4.4677 41 1 6.8700 2.8861 6.5295 42 1 3.8186 1.6888 3.1072 43 1 3.9626 0.3810 5.1537 44 1 5.6949 -0.2602 4.5523 45 1 9.4254 -0.7415 2.5385 46 1 9.8121 1.6857 2.6670 47 1 7.1216 4.2147 -0.0014 48 1 5.6964 4.8042 -0.8903 49 1 5.7848 2.3248 0.8896 50 1 5.7846 2.3254 -0.8903 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79519_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:04:34 Heat of formation + Delta-G solvation = -223.344081 kcal Electronic energy + Delta-G solvation = -43225.490210 eV Core-core repulsion = 37694.888885 eV Total energy + Delta-G solvation = -5530.601324 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 481.043 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.10082 -42.85249 -41.89956 -39.91591 -39.65182 -38.70221 -37.92016 -37.71224 -37.57099 -33.83300 -33.47135 -33.16182 -32.46883 -32.14292 -30.44784 -29.55292 -27.29504 -25.43440 -24.96504 -24.21158 -23.65277 -23.46259 -22.14836 -21.78618 -20.61913 -20.01761 -19.36687 -18.90158 -18.74398 -18.68576 -18.00219 -17.72545 -17.54665 -17.37293 -17.25054 -16.86790 -16.43973 -16.20003 -16.07469 -15.80488 -15.56049 -15.41835 -15.19668 -14.92438 -14.76141 -14.66957 -14.50706 -14.27075 -14.19705 -14.07374 -13.91063 -13.74878 -13.63515 -13.59808 -13.45623 -13.34995 -13.18869 -13.06427 -12.99380 -12.89306 -12.72288 -12.62265 -12.54123 -12.19432 -12.06791 -12.00424 -11.73133 -11.58862 -11.52308 -11.46077 -11.40041 -11.31298 -11.16785 -10.61160 -10.16961 -5.09256 -1.56114 -0.60792 -0.40905 0.16278 0.58646 0.99745 1.05504 1.37992 1.56177 1.72747 1.81839 2.10634 2.43628 2.68448 2.91803 2.99965 3.02986 3.14347 3.29761 3.35347 3.48697 3.51616 3.58922 3.62999 3.64259 3.68213 3.84224 3.90142 3.95348 3.98360 4.02754 4.06284 4.14676 4.16604 4.22750 4.28659 4.29728 4.51382 4.53208 4.60268 4.62591 4.63166 4.74695 4.81282 4.87308 4.89200 4.89980 5.02831 5.07723 5.10930 5.13740 5.18548 5.41605 6.41111 6.61730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.462 3.538 5 O -0.538 6.538 6 C -0.085 4.085 7 H 0.145 0.855 8 C -0.126 4.126 9 C -0.122 4.122 10 C 0.136 3.864 11 F -0.203 7.203 12 C -0.695 4.695 13 S 2.585 3.415 14 O -0.951 6.951 15 O -0.942 6.942 16 O -0.658 6.658 17 C 0.072 3.928 18 C -0.113 4.113 19 C -0.108 4.108 20 O -0.531 6.531 21 Si 0.782 3.218 22 C -0.085 4.085 23 C -0.077 4.077 24 Br -0.023 7.023 25 C -0.066 4.066 26 C -0.085 4.085 27 C -0.174 4.174 28 C -0.102 4.102 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.196 0.804 39 H 0.161 0.839 40 H 0.091 0.909 41 H 0.384 0.616 42 H -0.231 1.231 43 H -0.273 1.273 44 H 0.152 0.848 45 H 0.175 0.825 46 H 0.166 0.834 47 H 0.082 0.918 48 H 0.122 0.878 49 H 0.060 0.940 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 0.488 0.146 7.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.306 3.694 5 O -0.427 6.427 6 C -0.104 4.104 7 H 0.162 0.838 8 C -0.163 4.163 9 C -0.160 4.160 10 C 0.116 3.884 11 F -0.183 7.183 12 C -0.823 4.823 13 S 2.683 3.317 14 O -0.949 6.949 15 O -0.941 6.941 16 O -0.617 6.617 17 C 0.030 3.970 18 C -0.116 4.116 19 C -0.215 4.215 20 O -0.338 6.338 21 Si 0.681 3.319 22 C -0.105 4.105 23 C -0.157 4.157 24 Br 0.063 6.937 25 C -0.086 4.086 26 C -0.106 4.106 27 C -0.211 4.211 28 C -0.139 4.139 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.214 0.786 39 H 0.178 0.822 40 H 0.109 0.891 41 H 0.233 0.767 42 H -0.156 1.156 43 H -0.199 1.199 44 H 0.169 0.831 45 H 0.193 0.807 46 H 0.183 0.817 47 H 0.100 0.900 48 H 0.141 0.859 49 H 0.079 0.921 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.116 -1.200 -0.255 8.208 hybrid contribution 1.911 0.077 -0.024 1.912 sum -6.205 -1.124 -0.279 6.312 Atomic orbital electron populations 1.21826 0.90402 1.04210 1.04061 1.23244 0.97101 0.79471 1.02226 1.86504 1.23878 1.33201 1.83435 1.24203 0.80790 0.93128 0.71281 1.90695 1.61147 1.44368 1.46504 1.21352 0.95382 0.89120 1.04544 0.83789 1.21935 1.04077 0.94683 0.95638 1.22117 0.88302 0.97899 1.07669 1.20680 0.98255 0.77664 0.91795 1.92990 1.87934 1.39985 1.97377 1.31891 1.26678 1.13115 1.10566 1.05718 0.78645 0.74229 0.73099 1.93656 1.79079 1.65644 1.56551 1.93662 1.75816 1.40809 1.83766 1.85732 1.86518 1.26281 1.63134 1.18090 0.96529 0.77482 1.04897 1.20602 0.95295 0.95328 1.00408 1.26035 1.08649 1.01680 0.85155 1.86727 1.45208 1.83559 1.18265 0.92951 0.77750 0.81225 0.80018 1.21139 0.99614 0.91848 0.97849 1.22194 0.98078 0.92538 1.02933 1.96861 1.96470 1.02950 1.97411 1.21431 0.96116 0.94444 0.96608 1.21727 0.99454 0.93360 0.96043 1.22668 1.02895 0.96595 0.98965 1.21391 0.92582 0.95715 1.04230 0.88881 0.90724 0.91096 0.91694 0.91748 0.86544 0.90757 0.87107 0.86646 0.78619 0.82176 0.89088 0.76654 1.15608 1.19934 0.83073 0.80750 0.81662 0.89977 0.85931 0.92092 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.85 10.29 71.98 0.74 1.59 16 2 C 0.05 -0.04 6.19 71.98 0.45 0.40 16 3 O -0.35 -0.14 10.12 -51.39 -0.52 -0.66 16 4 C 0.46 0.99 7.26 71.24 0.52 1.51 16 5 O -0.54 -4.92 15.73 21.96 0.35 -4.57 16 6 C -0.09 0.37 2.63 -11.54 -0.03 0.34 16 7 H 0.14 -1.34 8.14 -2.39 -0.02 -1.36 16 8 C -0.13 1.07 4.86 30.59 0.15 1.22 16 9 C -0.12 1.18 5.19 30.59 0.16 1.34 16 10 C 0.14 -0.44 1.10 -10.80 -0.01 -0.46 16 11 F -0.20 -0.43 16.08 44.97 0.72 0.30 16 12 C -0.69 2.29 2.65 71.98 0.19 2.48 16 13 S 2.59 12.30 4.52 -56.49 -0.26 12.04 16 14 O -0.95 -6.69 13.25 -118.57 -1.57 -8.26 16 15 O -0.94 -11.49 17.61 -118.57 -2.09 -13.58 16 16 O -0.66 -2.27 9.21 -61.71 -0.57 -2.84 16 17 C 0.07 0.22 4.93 22.50 0.11 0.33 16 18 C -0.11 -0.18 4.50 -19.77 -0.09 -0.27 16 19 C -0.11 0.26 1.97 71.24 0.14 0.40 16 20 O -0.53 0.83 12.63 -148.98 -1.88 -1.06 16 21 Si 0.78 -3.13 29.05 68.60 1.99 -1.14 16 22 C -0.08 -0.25 8.39 22.27 0.19 -0.06 16 23 C -0.08 -0.22 6.22 22.32 0.14 -0.08 16 24 Br -0.02 -0.06 33.70 -20.37 -0.69 -0.75 16 25 C -0.07 -0.07 9.78 22.27 0.22 0.15 16 26 C -0.09 -0.21 8.51 22.36 0.19 -0.02 16 27 C -0.17 0.37 4.71 30.61 0.14 0.51 16 28 C -0.10 0.10 4.22 30.61 0.13 0.22 16 29 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 33 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 34 H 0.12 -1.35 8.11 -2.38 -0.02 -1.37 16 35 H 0.07 -0.59 3.17 -2.39 -0.01 -0.60 16 36 H 0.11 -1.35 8.14 -2.39 -0.02 -1.37 16 37 H 0.12 -1.53 8.14 -2.39 -0.02 -1.55 16 38 H 0.20 -2.10 6.97 -2.39 -0.02 -2.12 16 39 H 0.16 -0.82 2.38 -2.39 -0.01 -0.82 16 40 H 0.09 -0.64 3.56 -2.39 -0.01 -0.65 16 41 H 0.38 -2.29 9.11 -74.06 -0.68 -2.96 16 42 H -0.23 0.85 5.29 99.48 0.53 1.38 16 43 H -0.27 -0.48 6.45 99.48 0.64 0.16 16 44 H 0.15 0.36 5.59 -2.91 -0.02 0.34 16 45 H 0.18 -0.64 8.06 -2.91 -0.02 -0.66 16 46 H 0.17 0.03 7.87 -2.91 -0.02 0.01 16 47 H 0.08 0.13 5.46 -2.39 -0.01 0.11 16 48 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 49 H 0.06 0.07 6.39 -2.39 -0.02 0.06 16 50 H 0.08 0.08 8.10 -2.39 -0.02 0.06 16 Total: 0.00 -23.76 415.08 -1.03 -24.79 By element: Atomic # 1 Polarization: -14.03 SS G_CDS: 0.15 Total: -13.88 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 3.33 Total: 9.62 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -6.28 Total: -30.98 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.72 Total: 0.30 kcal Atomic # 14 Polarization: -3.13 SS G_CDS: 1.99 Total: -1.14 kcal Atomic # 16 Polarization: 12.30 SS G_CDS: -0.26 Total: 12.04 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.69 Total: -0.75 kcal Total: -23.76 -1.03 -24.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.557 kcal (2) G-P(sol) polarization free energy of solvation -23.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds