Wall clock time and date at job start Tue Mar 9 2021 14:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86304 * 109.47203 * 2 1 4 4 H 1.48503 * 109.46900 * 60.00224 * 3 2 1 5 5 H 1.48492 * 109.47058 * 180.02562 * 3 2 1 6 6 H 1.48496 * 109.47173 * 300.00107 * 3 2 1 7 7 C 1.50697 * 109.47248 * 120.00251 * 2 1 3 8 8 C 1.38129 * 120.01949 * 255.20548 * 7 2 1 9 9 C 1.38369 * 120.04249 * 179.97438 * 8 7 2 10 10 Br 1.89099 * 119.95317 * 180.02562 * 9 8 7 11 11 C 1.38330 * 120.09223 * 359.97438 * 9 8 7 12 12 C 1.38155 * 120.04339 * 0.02562 * 11 9 8 13 13 C 1.38708 * 119.95843 * 359.70226 * 12 11 9 14 14 O 1.35913 * 120.04726 * 180.02562 * 13 12 11 15 15 S 1.52199 * 114.00297 * 275.52142 * 14 13 12 16 16 O 1.42099 * 106.40343 * 188.57862 * 15 14 13 17 17 O 1.42110 * 106.40241 * 321.49539 * 15 14 13 18 18 C 1.76193 * 107.22118 * 75.03563 * 15 14 13 19 19 C 1.38233 * 120.00384 * 263.00018 * 18 15 14 20 20 C 1.38231 * 120.00424 * 179.97438 * 19 18 15 21 21 C 1.38236 * 120.00080 * 359.97141 * 20 19 18 22 Xx 1.80993 * 120.00297 * 179.97438 * 21 20 19 23 22 F 9.79095 * 133.44768 * 252.11790 * 7 1 2 24 23 F 1.61002 * 90.00187 * 135.00551 * 22 21 20 25 24 F 1.60998 * 90.00310 * 315.00210 * 22 21 20 26 25 F 1.61000 * 90.00402 * 225.00460 * 22 21 20 27 26 F 1.60996 * 90.00050 * 45.00294 * 22 21 20 28 27 C 1.38245 * 119.99711 * 359.96102 * 21 20 19 29 28 C 1.38232 * 119.99970 * 359.85431 * 28 21 20 30 29 H 0.96698 * 114.00543 * 174.25728 * 1 2 3 31 30 H 1.09002 * 109.47005 * 240.00143 * 2 1 3 32 31 H 1.07991 * 119.97507 * 359.95358 * 8 7 2 33 32 H 1.07994 * 119.97431 * 180.02562 * 11 9 8 34 33 H 1.07998 * 120.02060 * 179.97438 * 12 11 9 35 34 H 1.08001 * 119.99708 * 359.97438 * 19 18 15 36 35 H 1.08000 * 120.00682 * 179.97438 * 20 19 18 37 36 H 1.07996 * 119.99797 * 180.02562 * 28 21 20 38 37 H 1.07996 * 119.99946 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4565 1.2126 5 1 3.5349 1.7564 -0.0006 6 1 1.5550 2.4565 -1.2125 7 6 1.9313 -0.7104 1.2304 8 6 2.4496 0.0161 2.2847 9 6 2.9105 -0.6357 3.4149 10 35 3.6189 0.3614 4.8570 11 6 2.8528 -2.0157 3.4917 12 6 2.3352 -2.7460 2.4394 13 6 1.8674 -2.0942 1.3078 14 8 1.3573 -2.8109 0.2717 15 16 2.4083 -3.3292 -0.6994 16 8 1.7001 -3.8690 -1.8067 17 8 3.3805 -2.3004 -0.8254 18 6 3.2174 -4.6851 0.0825 19 6 4.4183 -4.4886 0.7383 20 6 5.0528 -5.5523 1.3521 21 6 4.4861 -6.8124 1.3108 22 9 6.0616 -9.4431 2.8256 23 9 3.9144 -8.6769 2.7479 24 9 6.7201 -7.7339 1.4801 25 9 5.0387 -9.1190 0.8180 26 9 5.5959 -7.2917 3.4100 27 6 3.2844 -7.0087 0.6562 28 6 2.6480 -5.9443 0.0456 29 1 -0.3934 -0.8789 -0.0884 30 1 1.7923 -0.5138 -0.8900 31 1 2.4954 1.0935 2.2266 32 1 3.2127 -2.5224 4.3748 33 1 2.2907 -3.8234 2.4996 34 1 4.8609 -3.5040 0.7709 35 1 5.9913 -5.3989 1.8641 36 1 2.8415 -7.9932 0.6243 37 1 1.7095 -6.0978 -0.4661 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79519_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:04:50 Heat of formation + Delta-G solvation = 309.476935 kcal Electronic energy + Delta-G solvation = -37392.444220 eV Core-core repulsion = 31252.990967 eV Total energy + Delta-G solvation = -6139.453253 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 465.951 amu Computer time = 20.15 seconds Orbital eigenvalues (eV) -44.47056 -44.31172 -44.27475 -44.16145 -43.65329 -42.76039 -41.33957 -39.74323 -38.84770 -37.84637 -37.48933 -33.41472 -33.37526 -33.23171 -32.84462 -30.26964 -27.28589 -25.07207 -24.87947 -24.48092 -23.39521 -21.88541 -20.55781 -19.53148 -19.06704 -18.62332 -17.94614 -17.57256 -17.18926 -16.73908 -16.59441 -16.43578 -16.04654 -15.67030 -15.57236 -15.53546 -15.49655 -15.19894 -14.89139 -14.83030 -14.75912 -14.52690 -14.45190 -14.30357 -14.28598 -14.22488 -14.10365 -13.98276 -13.96308 -13.78414 -13.68670 -13.67395 -13.59658 -13.33144 -13.26168 -13.08764 -12.75533 -12.39430 -12.24209 -12.04035 -11.98965 -11.95777 -11.60848 -11.56870 -11.47002 -11.38555 -11.29577 -11.11885 -10.41194 -10.00473 -5.33952 -4.87160 -3.47369 -1.65578 -1.36659 -0.79597 -0.44629 -0.23614 0.36102 0.77939 1.04756 1.32697 1.44397 1.48528 1.90067 1.94464 2.07435 2.35828 2.51872 2.65011 3.03367 3.10316 3.19481 3.31008 3.54504 3.65799 3.66786 3.78308 3.81812 3.84106 3.92406 4.08369 4.16815 4.21874 4.32997 4.41029 4.58716 4.67168 4.72800 4.80618 5.24851 6.50954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.111 4.111 3 Si 1.005 2.995 4 H -0.246 1.246 5 H -0.225 1.225 6 H -0.262 1.262 7 C -0.086 4.086 8 C -0.088 4.088 9 C -0.071 4.071 10 Br -0.029 7.029 11 C -0.060 4.060 12 C -0.109 4.109 13 C 0.076 3.924 14 O -0.643 6.643 15 S 2.688 3.312 16 O -0.925 6.925 17 O -0.939 6.939 18 C -0.699 4.699 19 C 0.057 3.943 20 C -0.123 4.123 21 C 0.388 3.612 22 F -0.203 7.203 23 F -0.156 7.156 24 F -0.163 7.163 25 F -0.168 7.168 26 F -0.151 7.151 27 C -0.126 4.126 28 C 0.066 3.934 29 H 0.383 0.617 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.179 0.821 33 H 0.185 0.815 34 H 0.225 0.775 35 H 0.205 0.795 36 H 0.203 0.797 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 7.329 -1.259 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.219 4.219 3 Si 0.824 3.176 4 H -0.170 1.170 5 H -0.148 1.148 6 H -0.186 1.186 7 C -0.090 4.090 8 C -0.107 4.107 9 C -0.152 4.152 10 Br 0.057 6.943 11 C -0.080 4.080 12 C -0.130 4.130 13 C 0.034 3.966 14 O -0.602 6.602 15 S 2.778 3.222 16 O -0.923 6.923 17 O -0.938 6.938 18 C -0.781 4.781 19 C 0.039 3.961 20 C -0.141 4.141 21 C 0.383 3.617 22 F -0.203 7.203 23 F -0.155 7.155 24 F -0.162 7.162 25 F -0.166 7.166 26 F -0.149 7.149 27 C -0.144 4.144 28 C 0.048 3.952 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.169 0.831 32 H 0.196 0.804 33 H 0.202 0.798 34 H 0.241 0.759 35 H 0.222 0.778 36 H 0.220 0.780 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.010 9.566 -1.184 10.440 hybrid contribution 0.499 -3.393 0.491 3.464 sum -3.511 6.173 -0.693 7.135 Atomic orbital electron populations 1.86751 1.16059 1.35458 1.96426 1.25537 0.85559 1.15228 0.95612 0.84584 0.80399 0.71373 0.81292 1.16965 1.14764 1.18640 1.20391 0.98414 0.92507 0.97643 1.21180 0.96787 1.01466 0.91301 1.22179 1.02626 0.95905 0.94525 1.96926 1.83613 1.72443 1.41306 1.21432 0.96083 0.90887 0.99599 1.21746 0.97383 1.03193 0.90679 1.18029 1.02331 0.89031 0.87188 1.85754 1.56877 1.70922 1.46651 1.02572 0.72772 0.73565 0.73332 1.93714 1.71965 1.79811 1.46822 1.93696 1.62120 1.53301 1.84678 1.31888 1.10320 1.18283 1.17639 1.21699 0.89540 0.98253 0.86569 1.22190 1.05419 0.84292 1.02150 1.28065 0.85210 0.58530 0.89936 2.00000 1.60338 1.65276 1.94721 1.99922 1.31325 1.87130 1.97099 1.99919 1.57876 1.58769 1.99634 1.99921 1.63677 1.80690 1.72324 1.99920 1.82094 1.46922 1.85995 1.22230 0.90664 1.05159 0.96304 1.21642 0.99082 0.84987 0.89498 0.76712 0.89378 0.83148 0.80371 0.79781 0.75892 0.77833 0.78005 0.75785 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 585. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.37 12.63 -148.98 -1.88 -0.51 16 2 C -0.11 0.40 2.28 71.23 0.16 0.56 16 3 Si 1.01 -2.65 25.76 68.60 1.77 -0.88 16 4 H -0.25 0.61 6.73 99.48 0.67 1.28 16 5 H -0.23 1.00 7.11 99.48 0.71 1.71 16 6 H -0.26 -0.06 7.11 99.48 0.71 0.64 16 7 C -0.09 0.48 4.86 -19.77 -0.10 0.39 16 8 C -0.09 0.49 8.40 22.27 0.19 0.68 16 9 C -0.07 0.54 6.22 22.32 0.14 0.68 16 10 Br -0.03 0.15 33.70 -20.37 -0.69 -0.54 16 11 C -0.06 0.76 9.78 22.27 0.22 0.98 16 12 C -0.11 1.57 8.46 22.36 0.19 1.76 16 13 C 0.08 -0.74 4.71 22.50 0.11 -0.63 16 14 O -0.64 7.08 9.14 -61.85 -0.57 6.52 16 15 S 2.69 -27.19 5.16 -56.49 -0.29 -27.49 16 16 O -0.92 4.02 17.48 -118.78 -2.08 1.95 16 17 O -0.94 6.66 14.41 -118.78 -1.71 4.95 16 18 C -0.70 10.92 4.74 22.27 0.11 11.03 16 19 C 0.06 -0.99 8.56 22.27 0.19 -0.80 16 20 C -0.12 1.58 8.62 22.27 0.19 1.77 16 21 C 0.39 -2.42 4.82 22.27 0.11 -2.31 16 22 F -0.20 -4.42 16.66 44.97 0.75 -3.67 16 23 F -0.16 -1.50 15.32 44.97 0.69 -0.81 16 24 F -0.16 -1.78 15.30 44.97 0.69 -1.09 16 25 F -0.17 -1.89 15.31 44.97 0.69 -1.20 16 26 F -0.15 -1.35 15.31 44.97 0.69 -0.66 16 27 C -0.13 1.56 8.62 22.27 0.19 1.75 16 28 C 0.07 -1.13 9.52 22.27 0.21 -0.92 16 29 H 0.38 -3.18 8.74 -74.06 -0.65 -3.83 16 30 H 0.09 -0.49 6.27 -2.39 -0.01 -0.51 16 31 H 0.15 -0.90 4.89 -2.92 -0.01 -0.91 16 32 H 0.18 -3.01 8.06 -2.91 -0.02 -3.03 16 33 H 0.18 -3.95 7.39 -2.91 -0.02 -3.97 16 34 H 0.22 -5.03 7.48 -2.91 -0.02 -5.05 16 35 H 0.20 -2.95 7.40 -2.91 -0.02 -2.97 16 36 H 0.20 -2.74 7.40 -2.91 -0.02 -2.76 16 37 H 0.23 -5.18 7.79 -2.91 -0.02 -5.20 16 Total: 0.00 -34.34 372.14 1.24 -33.10 By element: Atomic # 1 Polarization: -25.88 SS G_CDS: 1.27 Total: -24.61 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 1.90 Total: 14.95 kcal Atomic # 8 Polarization: 19.14 SS G_CDS: -6.24 Total: 12.90 kcal Atomic # 9 Polarization: -10.95 SS G_CDS: 3.50 Total: -7.44 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: 1.77 Total: -0.88 kcal Atomic # 16 Polarization: -27.19 SS G_CDS: -0.29 Total: -27.49 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -0.69 Total: -0.54 kcal Total: -34.34 1.24 -33.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 342.578 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 308.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 309.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.15 seconds