Wall clock time and date at job start Tue Mar 9 2021 12:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 H 1.48503 * 109.47274 * 59.99882 * 3 2 1 5 5 H 1.48506 * 109.47357 * 179.97438 * 3 2 1 6 6 H 1.48503 * 109.47244 * 299.99766 * 3 2 1 7 7 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 8 8 C 1.38122 * 119.97131 * 65.27827 * 7 2 1 9 9 C 1.38754 * 119.94250 * 179.97438 * 8 7 2 10 10 O 1.35901 * 120.05658 * 180.02562 * 9 8 7 11 11 S 1.52205 * 113.99801 * 89.99648 * 10 9 8 12 12 O 1.42104 * 106.40241 * 188.54313 * 11 10 9 13 13 O 1.42099 * 106.40360 * 321.46367 * 11 10 9 14 14 C 1.76201 * 107.21599 * 75.00291 * 11 10 9 15 15 C 1.38233 * 119.99974 * 270.26985 * 14 11 10 16 16 C 1.38239 * 120.00087 * 179.97438 * 15 14 11 17 17 C 1.38239 * 119.99893 * 359.97438 * 16 15 14 18 Xx 1.81000 * 119.99896 * 179.97438 * 17 16 15 19 18 F 9.74691 * 151.67265 * 44.57129 * 8 1 2 20 19 F 1.60998 * 89.99796 * 134.99562 * 18 17 16 21 20 F 1.61000 * 89.99744 * 314.99760 * 18 17 16 22 21 F 1.60999 * 89.99981 * 224.99574 * 18 17 16 23 22 F 1.61008 * 90.00143 * 44.99684 * 18 17 16 24 23 C 1.38229 * 119.99737 * 359.94672 * 17 16 15 25 24 C 1.38234 * 120.00128 * 90.00112 * 14 11 10 26 25 C 1.38715 * 119.89278 * 359.97438 * 9 8 7 27 26 C 1.38172 * 119.93779 * 0.02562 * 26 9 8 28 27 C 1.38241 * 120.05558 * 359.73848 * 27 26 9 29 28 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 30 29 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 31 30 H 1.08002 * 120.02880 * 359.95503 * 8 7 2 32 31 H 1.08002 * 120.00364 * 359.97438 * 15 14 11 33 32 H 1.07996 * 119.99907 * 179.97438 * 16 15 14 34 33 H 1.08006 * 119.99732 * 180.02562 * 24 17 16 35 34 H 1.08000 * 120.00115 * 0.20191 * 25 14 11 36 35 H 1.07995 * 120.02916 * 179.97438 * 26 9 8 37 36 H 1.08003 * 119.96959 * 179.97438 * 27 26 9 38 37 H 1.08007 * 119.94050 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5549 2.4565 1.2125 5 1 3.5350 1.7565 0.0006 6 1 1.5550 2.4565 -1.2125 7 6 1.9313 -0.7104 1.2305 8 6 1.6895 -2.0603 1.3950 9 6 2.1528 -2.7138 2.5279 10 8 1.9166 -4.0421 2.6918 11 16 2.9998 -4.9397 2.1108 12 8 2.5034 -6.2690 2.1878 13 8 3.4130 -4.3337 0.8937 14 6 4.3823 -4.8610 3.2003 15 6 5.3575 -3.8996 3.0112 16 6 6.4419 -3.8375 3.8662 17 6 6.5509 -4.7364 4.9108 18 9 9.2351 -4.5853 7.0244 19 9 6.9860 -4.8243 7.2921 20 9 8.9561 -4.4866 4.7676 21 9 8.1319 -6.2550 5.9415 22 9 7.8103 -3.0559 6.1184 23 6 5.5749 -5.6967 5.1008 24 6 4.4891 -5.7570 4.2475 25 6 2.8582 -2.0095 3.4925 26 6 3.0974 -0.6592 3.3232 27 6 2.6391 -0.0114 2.1912 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5139 -0.8900 30 1 1.1401 -2.6065 0.6425 31 1 5.2722 -3.1970 2.1954 32 1 7.2039 -3.0867 3.7182 33 1 5.6598 -6.3987 5.9171 34 1 3.7267 -6.5074 4.3959 35 1 3.2194 -2.5159 4.3753 36 1 3.6463 -0.1102 4.0740 37 1 2.8275 1.0440 2.0605 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79615_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:32 Heat of formation + Delta-G solvation = 307.860761 kcal Electronic energy + Delta-G solvation = -34517.136164 eV Core-core repulsion = 28717.430831 eV Total energy + Delta-G solvation = -5799.705333 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 388.041 amu Computer time = 32.79 seconds Orbital eigenvalues (eV) -44.72082 -44.50068 -43.98965 -43.86246 -43.62519 -42.36112 -41.29129 -39.73983 -38.75310 -37.46621 -37.39260 -33.28400 -33.14174 -32.70315 -31.67670 -26.97673 -24.95511 -24.80808 -24.70316 -23.05625 -21.50518 -20.36464 -19.17328 -18.79784 -18.46254 -17.90356 -17.62858 -17.39763 -16.65452 -16.49544 -16.17252 -15.75443 -15.67759 -15.52823 -15.48518 -15.35368 -14.97971 -14.82863 -14.77668 -14.67581 -14.42310 -14.40323 -14.33687 -14.17294 -14.13698 -13.94791 -13.70551 -13.62083 -13.59739 -13.52071 -13.46717 -13.33387 -13.29987 -13.11319 -12.74442 -12.66595 -12.62676 -12.21750 -12.17187 -11.92971 -11.72694 -11.55578 -11.22908 -11.06658 -10.40269 -10.11172 -10.01815 -5.37742 -4.94943 -3.37910 -1.56148 -1.22759 -0.76825 -0.10256 0.10533 0.91467 1.19041 1.40164 1.50913 1.57610 1.95682 2.19385 2.29756 2.38617 2.57961 2.68789 3.18103 3.23358 3.34331 3.62478 3.68559 3.69579 3.85340 3.86092 3.93265 3.99008 4.11865 4.18721 4.25385 4.34767 4.43018 4.61345 4.76269 4.86517 4.96405 5.13938 5.26135 5.65315 6.80888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.092 4.092 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.246 1.246 6 H -0.262 1.262 7 C -0.070 4.070 8 C -0.079 4.079 9 C 0.035 3.965 10 O -0.646 6.646 11 S 2.697 3.303 12 O -0.936 6.936 13 O -0.946 6.946 14 C -0.695 4.695 15 C 0.054 3.946 16 C -0.125 4.125 17 C 0.408 3.592 18 F -0.059 7.059 19 F -0.115 7.115 20 F -0.209 7.209 21 F -0.260 7.260 22 F -0.209 7.209 23 C -0.128 4.128 24 C 0.061 3.939 25 C -0.119 4.119 26 C -0.087 4.087 27 C -0.106 4.106 28 H 0.400 0.600 29 H 0.100 0.900 30 H 0.142 0.858 31 H 0.221 0.779 32 H 0.204 0.796 33 H 0.202 0.798 34 H 0.224 0.776 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.252 5.567 -5.328 10.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.169 1.169 6 H -0.187 1.187 7 C -0.071 4.071 8 C -0.100 4.100 9 C -0.006 4.006 10 O -0.606 6.606 11 S 2.787 3.213 12 O -0.934 6.934 13 O -0.944 6.944 14 C -0.777 4.777 15 C 0.037 3.963 16 C -0.142 4.142 17 C 0.402 3.598 18 F -0.059 7.059 19 F -0.114 7.114 20 F -0.208 7.208 21 F -0.258 7.258 22 F -0.207 7.207 23 C -0.146 4.146 24 C 0.043 3.957 25 C -0.139 4.139 26 C -0.105 4.105 27 C -0.125 4.125 28 H 0.251 0.749 29 H 0.118 0.882 30 H 0.160 0.840 31 H 0.237 0.763 32 H 0.221 0.779 33 H 0.219 0.781 34 H 0.240 0.760 35 H 0.187 0.813 36 H 0.193 0.807 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.404 5.781 -5.213 10.744 hybrid contribution 1.424 -0.448 0.946 1.767 sum -5.981 5.333 -4.268 9.079 Atomic orbital electron populations 1.86449 1.17267 1.82358 1.51224 1.24912 0.85909 1.11281 0.98111 0.85308 0.80352 0.74038 0.80370 1.18676 1.16928 1.18679 1.19437 0.98266 0.92834 0.96522 1.21272 0.97275 0.95037 0.96378 1.18312 1.06110 0.77666 0.98483 1.85772 1.63457 1.25880 1.85461 1.02284 0.72339 0.73599 0.73120 1.93674 1.78234 1.35336 1.86183 1.93672 1.82296 1.76032 1.42430 1.31922 1.22209 1.06415 1.17110 1.21647 0.85145 0.94861 0.94691 1.22203 1.01348 1.01065 0.89624 1.27752 0.56357 0.99767 0.75909 1.99966 1.89081 1.98575 1.18233 1.99950 1.99637 1.14008 1.97790 1.99913 1.93864 1.99727 1.27267 1.99928 1.93926 1.67486 1.64468 1.99932 1.90646 1.59795 1.70301 1.22277 0.89201 0.98891 1.04244 1.21633 0.92897 0.95247 0.85913 1.21753 0.97890 0.95876 0.98401 1.21408 0.98485 0.92992 0.97578 1.21621 0.96317 1.01006 0.93552 0.74888 0.88226 0.84044 0.76273 0.77882 0.78076 0.75997 0.81323 0.80655 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 15 The total number of SCF iterations 814. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.79 12.81 -148.98 -1.91 0.88 16 2 C -0.09 0.64 2.79 71.24 0.20 0.84 16 3 Si 0.98 -7.33 25.14 68.60 1.72 -5.60 16 4 H -0.26 1.28 7.04 99.48 0.70 1.98 16 5 H -0.25 1.86 7.11 99.48 0.71 2.57 16 6 H -0.26 1.55 7.11 99.48 0.71 2.25 16 7 C -0.07 0.35 5.38 -19.88 -0.11 0.24 16 8 C -0.08 0.27 8.83 22.37 0.20 0.46 16 9 C 0.04 -0.20 4.80 22.51 0.11 -0.09 16 10 O -0.65 3.65 10.16 -61.71 -0.63 3.02 16 11 S 2.70 -16.48 5.42 -56.49 -0.31 -16.79 16 12 O -0.94 0.17 17.27 -118.78 -2.05 -1.88 16 13 O -0.95 2.80 15.61 -118.78 -1.85 0.94 16 14 C -0.69 8.25 5.28 22.27 0.12 8.37 16 15 C 0.05 -0.75 8.39 22.27 0.19 -0.57 16 16 C -0.12 1.21 8.62 22.27 0.19 1.40 16 17 C 0.41 -1.33 4.82 22.27 0.11 -1.23 16 18 F -0.06 -1.10 16.66 44.97 0.75 -0.36 16 19 F -0.11 -1.09 15.31 44.97 0.69 -0.40 16 20 F -0.21 -2.76 15.31 44.97 0.69 -2.08 16 21 F -0.26 -3.60 15.31 44.97 0.69 -2.91 16 22 F -0.21 -2.13 15.32 44.97 0.69 -1.45 16 23 C -0.13 1.17 8.62 22.27 0.19 1.37 16 24 C 0.06 -0.82 9.52 22.27 0.21 -0.60 16 25 C -0.12 1.31 8.36 22.37 0.19 1.49 16 26 C -0.09 1.02 10.04 22.25 0.22 1.24 16 27 C -0.11 0.88 8.66 22.28 0.19 1.07 16 28 H 0.40 -5.30 8.74 -74.06 -0.65 -5.95 16 29 H 0.10 -1.02 7.96 -2.39 -0.02 -1.04 16 30 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 31 H 0.22 -4.22 7.62 -2.91 -0.02 -4.24 16 32 H 0.20 -2.31 7.40 -2.91 -0.02 -2.33 16 33 H 0.20 -2.12 7.40 -2.91 -0.02 -2.14 16 34 H 0.22 -4.15 7.62 -2.91 -0.02 -4.18 16 35 H 0.17 -2.85 7.94 -2.91 -0.02 -2.87 16 36 H 0.18 -3.05 8.06 -2.91 -0.02 -3.08 16 37 H 0.15 -1.55 4.86 -2.91 -0.01 -1.56 16 Total: 0.00 -35.45 355.36 1.76 -33.68 By element: Atomic # 1 Polarization: -22.35 SS G_CDS: 1.28 Total: -21.07 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 2.01 Total: 14.00 kcal Atomic # 8 Polarization: 9.41 SS G_CDS: -6.44 Total: 2.97 kcal Atomic # 9 Polarization: -10.69 SS G_CDS: 3.50 Total: -7.19 kcal Atomic # 14 Polarization: -7.33 SS G_CDS: 1.72 Total: -5.60 kcal Atomic # 16 Polarization: -16.48 SS G_CDS: -0.31 Total: -16.79 kcal Total: -35.45 1.76 -33.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79615_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 341.545 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 306.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 307.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 32.79 seconds