Wall clock time and date at job start Tue Mar 9 2021 12:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.46836 * 2 1 4 4 C 1.34224 * 117.00086 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99859 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00470 * 180.02562 * 4 3 2 7 7 H 1.09005 * 112.90667 * 48.75083 * 6 4 3 8 8 C 1.53773 * 113.61789 * 180.02562 * 6 4 3 9 9 C 1.53784 * 87.08270 * 139.98207 * 8 6 4 10 10 F 1.39893 * 113.61284 * 89.20296 * 9 8 6 11 11 C 1.52999 * 113.61318 * 220.01686 * 9 8 6 12 12 S 1.81402 * 109.47106 * 179.97438 * 11 9 8 13 13 O 1.42096 * 110.53929 * 68.37676 * 12 11 9 14 14 O 1.42105 * 110.54122 * 291.62808 * 12 11 9 15 15 O 1.52195 * 104.45122 * 180.02562 * 12 11 9 16 16 C 1.36009 * 114.00142 * 74.99720 * 15 12 11 17 17 C 1.38603 * 120.07959 * 270.25248 * 16 15 12 18 18 Br 1.89092 * 120.00788 * 0.02562 * 17 16 15 19 19 C 1.38357 * 119.97966 * 180.27808 * 17 16 15 20 20 C 1.38203 * 120.14202 * 359.74633 * 19 17 16 21 21 C 1.50701 * 119.92996 * 179.97438 * 20 19 17 22 22 O 1.42897 * 109.47363 * 245.02528 * 21 20 19 23 23 Si 1.86305 * 109.46807 * 5.02119 * 21 20 19 24 24 C 1.38281 * 120.14987 * 359.97438 * 20 19 17 25 25 C 1.38546 * 120.01646 * 0.02659 * 24 20 19 26 26 O 1.35992 * 120.06962 * 179.97438 * 25 24 20 27 27 C 1.42905 * 116.99843 * 359.97438 * 26 25 24 28 28 C 1.53780 * 87.07866 * 334.56590 * 9 8 6 29 29 H 1.08997 * 109.47367 * 60.00091 * 1 2 3 30 30 H 1.09001 * 109.46799 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47371 * 299.99959 * 1 2 3 32 32 H 1.09000 * 109.47008 * 240.00361 * 2 1 3 33 33 H 1.09000 * 109.46923 * 120.00154 * 2 1 3 34 34 H 1.09005 * 113.61667 * 25.43416 * 8 6 4 35 35 H 1.09002 * 113.69182 * 254.53964 * 8 6 4 36 36 H 1.09013 * 109.47047 * 60.00264 * 11 9 8 37 37 H 1.08993 * 109.47378 * 300.00198 * 11 9 8 38 38 H 1.08004 * 119.92744 * 179.72427 * 19 17 16 39 39 H 1.08997 * 109.47521 * 125.01907 * 21 20 19 40 40 H 0.96697 * 113.99754 * 179.97438 * 22 21 20 41 41 H 1.48499 * 110.00335 * 178.67830 * 23 21 20 42 42 H 1.48496 * 110.00097 * 300.00403 * 23 21 20 43 43 H 1.08005 * 119.98960 * 179.97438 * 24 20 19 44 44 H 1.09001 * 109.47103 * 60.00803 * 27 26 25 45 45 H 1.09004 * 109.47054 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.47187 * 300.00363 * 27 26 25 47 47 H 1.08999 * 113.61264 * 139.98172 * 28 9 8 48 48 H 1.08999 * 113.61773 * 270.88377 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.4708 3.5824 0.7561 8 6 5.4581 2.9683 0.0011 9 6 5.3562 4.1431 -0.9859 10 9 5.2849 5.3937 -0.3631 11 6 6.3984 4.0954 -2.1051 12 16 6.1769 5.5255 -3.1989 13 8 6.5219 6.7275 -2.5241 14 8 4.9593 5.4154 -3.9232 15 8 7.2586 5.3651 -4.2576 16 6 6.9928 4.3998 -5.1782 17 6 7.4069 3.0957 -4.9567 18 35 8.3420 2.6565 -3.3729 19 6 7.1406 2.1166 -5.8972 20 6 6.4573 2.4346 -7.0557 21 6 6.1703 1.3645 -8.0772 22 8 6.8761 1.6569 -9.2848 23 14 6.7249 -0.2876 -7.4184 24 6 6.0365 3.7327 -7.2797 25 6 6.2999 4.7182 -6.3422 26 8 5.8870 5.9952 -6.5617 27 6 5.1870 6.2501 -7.7812 28 6 3.9861 3.5777 -1.3956 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.9127 2.0754 -0.4283 35 1 5.8907 3.2426 0.9632 36 1 6.2738 3.1769 -2.6788 37 1 7.3982 4.1203 -1.6718 38 1 7.4675 1.1016 -5.7258 39 1 5.0998 1.3338 -8.2803 40 1 6.7378 1.0079 -9.9881 41 1 6.4184 -1.3560 -8.4031 42 1 8.1828 -0.2588 -7.1374 43 1 5.5032 3.9784 -8.1862 44 1 4.2842 5.6404 -7.8162 45 1 4.9157 7.3047 -7.8308 46 1 5.8275 5.9999 -8.6269 47 1 3.2290 4.3443 -1.5604 48 1 4.0382 2.8515 -2.2067 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79621_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:08 Heat of formation + Delta-G solvation = -211.844003 kcal Electronic energy + Delta-G solvation = -41309.403201 eV Core-core repulsion = 35616.155984 eV Total energy + Delta-G solvation = -5693.247217 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 483.027 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.22182 -42.78846 -41.80901 -40.53269 -39.37612 -39.29049 -38.54253 -37.58794 -37.49874 -37.38481 -34.06194 -32.75606 -32.28828 -31.93456 -30.67281 -28.68234 -27.29244 -27.11387 -26.93180 -24.05990 -23.77789 -23.54026 -22.37764 -21.79910 -20.87748 -20.01479 -19.38962 -19.15158 -18.82747 -18.75857 -18.47099 -17.94091 -17.70437 -17.62022 -17.23618 -16.88677 -16.80256 -16.52599 -16.30729 -16.14256 -16.01946 -15.65787 -15.41584 -15.36240 -14.82416 -14.67409 -14.66676 -14.48089 -14.34409 -14.18354 -13.95301 -13.78484 -13.63536 -13.61756 -13.53381 -13.42776 -13.16513 -13.07531 -13.04789 -12.90868 -12.82040 -12.57325 -12.50404 -12.46988 -12.45195 -12.00006 -11.86556 -11.69417 -11.60687 -11.51257 -11.38777 -11.20908 -10.61314 -10.20580 -9.71071 -4.95009 -1.41813 -0.59095 -0.27701 -0.12728 0.72182 1.03914 1.19696 1.58144 1.59570 1.84291 1.90766 1.96731 2.25709 2.57208 2.69464 2.73129 2.86280 3.02488 3.18838 3.22649 3.27456 3.39028 3.49647 3.64832 3.72581 3.79047 3.84061 4.03014 4.07741 4.08928 4.12790 4.25169 4.29853 4.30755 4.33444 4.36708 4.38353 4.46207 4.50474 4.59309 4.65776 4.66734 4.75368 4.86296 4.87642 4.94357 5.00357 5.04763 5.17189 5.45174 5.93823 6.55262 6.65276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.479 3.521 5 O -0.526 6.526 6 C -0.107 4.107 7 H 0.150 0.850 8 C -0.115 4.115 9 C 0.092 3.908 10 F -0.187 7.187 11 C -0.666 4.666 12 S 2.581 3.419 13 O -0.953 6.953 14 O -0.945 6.945 15 O -0.651 6.651 16 C 0.028 3.972 17 C -0.077 4.077 18 Br 0.003 6.997 19 C -0.107 4.107 20 C -0.005 4.005 21 C -0.082 4.082 22 O -0.552 6.552 23 Si 0.744 3.256 24 C -0.147 4.147 25 C 0.159 3.841 26 O -0.322 6.322 27 C 0.008 3.992 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.121 0.879 40 H 0.403 0.597 41 H -0.276 1.276 42 H -0.288 1.288 43 H 0.179 0.821 44 H 0.083 0.917 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 -8.121 -4.590 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.322 3.678 5 O -0.415 6.415 6 C -0.126 4.126 7 H 0.168 0.832 8 C -0.153 4.153 9 C 0.072 3.928 10 F -0.168 7.168 11 C -0.794 4.794 12 S 2.679 3.321 13 O -0.951 6.951 14 O -0.944 6.944 15 O -0.610 6.610 16 C -0.017 4.017 17 C -0.158 4.158 18 Br 0.089 6.911 19 C -0.126 4.126 20 C -0.007 4.007 21 C -0.191 4.191 22 O -0.363 6.363 23 Si 0.648 3.352 24 C -0.166 4.166 25 C 0.108 3.892 26 O -0.234 6.234 27 C -0.086 4.086 28 C -0.182 4.182 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.129 0.871 36 H 0.198 0.802 37 H 0.189 0.811 38 H 0.189 0.811 39 H 0.139 0.861 40 H 0.254 0.746 41 H -0.202 1.202 42 H -0.215 1.215 43 H 0.196 0.804 44 H 0.101 0.899 45 H 0.138 0.862 46 H 0.098 0.902 47 H 0.130 0.870 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.347 -7.794 -3.902 9.740 hybrid contribution 0.429 0.148 -1.048 1.142 sum -3.918 -7.647 -4.949 9.916 Atomic orbital electron populations 1.21837 0.91031 1.04226 1.03647 1.23294 0.96700 0.79094 1.02879 1.86529 1.24036 1.33784 1.83299 1.23490 0.80725 0.92118 0.71431 1.90674 1.60950 1.43569 1.46271 1.22542 0.97306 0.91247 1.01469 0.83235 1.23607 0.93717 0.97175 1.00817 1.21459 0.96147 0.81899 0.93314 1.92977 1.97120 1.42827 1.83856 1.32137 1.10506 1.23352 1.13392 1.05909 0.73757 0.77029 0.75415 1.93615 1.82816 1.43482 1.75174 1.93616 1.46082 1.87162 1.67517 1.85777 1.67130 1.59450 1.48644 1.17144 1.08671 0.85126 0.90733 1.21827 1.03051 0.92802 0.98140 1.96847 1.74039 1.93240 1.26936 1.21073 0.99350 0.99555 0.92632 1.19504 0.93515 0.94215 0.93508 1.24938 1.02021 1.04937 0.87224 1.86531 1.72459 1.53533 1.23751 0.94299 0.80926 0.72874 0.87077 1.21519 1.03592 0.91470 1.00028 1.19074 0.91861 0.86097 0.92134 1.86180 1.70337 1.23368 1.43564 1.23651 0.96731 1.05181 0.83000 1.23886 0.95290 1.02081 0.96974 0.91192 0.88517 0.91599 0.90602 0.91318 0.85289 0.87108 0.80239 0.81068 0.81068 0.86109 0.74556 1.20241 1.21533 0.80400 0.89884 0.86242 0.90233 0.86950 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.78 10.29 71.98 0.74 1.52 16 2 C 0.05 -0.08 6.19 71.98 0.45 0.36 16 3 O -0.36 -0.52 10.22 -51.36 -0.52 -1.05 16 4 C 0.48 0.81 7.48 71.24 0.53 1.35 16 5 O -0.53 -3.20 15.65 21.96 0.34 -2.86 16 6 C -0.11 0.22 4.24 -11.02 -0.05 0.18 16 7 H 0.15 -0.71 8.14 -2.38 -0.02 -0.73 16 8 C -0.11 0.29 6.86 31.12 0.21 0.51 16 9 C 0.09 0.09 1.62 -10.27 -0.02 0.07 16 10 F -0.19 -1.24 16.28 44.97 0.73 -0.51 16 11 C -0.67 -0.73 3.53 71.98 0.25 -0.48 16 12 S 2.58 25.67 4.89 -56.49 -0.28 25.39 16 13 O -0.95 -17.17 17.54 -118.57 -2.08 -19.24 16 14 O -0.95 -10.34 15.81 -117.13 -1.85 -12.19 16 15 O -0.65 -6.52 9.28 -60.67 -0.56 -7.09 16 16 C 0.03 0.18 4.81 22.58 0.11 0.29 16 17 C -0.08 -0.11 5.55 22.39 0.12 0.02 16 18 Br 0.00 0.00 27.48 -20.37 -0.56 -0.56 16 19 C -0.11 0.26 8.40 22.29 0.19 0.45 16 20 C -0.01 0.02 5.38 -19.86 -0.11 -0.09 16 21 C -0.08 0.64 2.79 71.24 0.20 0.84 16 22 O -0.55 2.94 12.81 -148.98 -1.91 1.03 16 23 Si 0.74 -5.57 29.84 68.60 2.05 -3.53 16 24 C -0.15 0.22 8.67 22.35 0.19 0.41 16 25 C 0.16 0.79 5.93 22.57 0.13 0.93 16 26 O -0.32 -2.17 9.73 -72.60 -0.71 -2.87 16 27 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 28 C -0.14 0.28 7.08 31.12 0.22 0.50 16 29 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.08 -0.18 8.13 -2.39 -0.02 -0.20 16 33 H 0.07 -0.08 8.13 -2.39 -0.02 -0.10 16 34 H 0.13 -0.49 7.39 -2.38 -0.02 -0.51 16 35 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.18 -0.68 5.14 -2.38 -0.01 -0.69 16 37 H 0.17 -0.31 6.77 -2.39 -0.02 -0.33 16 38 H 0.17 -1.15 4.85 -2.91 -0.01 -1.16 16 39 H 0.12 -1.64 7.96 -2.39 -0.02 -1.66 16 40 H 0.40 -5.27 8.74 -74.06 -0.65 -5.91 16 41 H -0.28 0.92 7.11 99.48 0.71 1.63 16 42 H -0.29 0.12 7.04 99.48 0.70 0.82 16 43 H 0.18 -1.22 6.30 -2.91 -0.02 -1.24 16 44 H 0.08 -0.57 7.66 -2.39 -0.02 -0.59 16 45 H 0.12 -0.65 8.14 -2.38 -0.02 -0.66 16 46 H 0.08 -0.53 7.66 -2.39 -0.02 -0.55 16 47 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.13 -0.70 7.91 -2.39 -0.02 -0.72 16 Total: 0.00 -29.80 425.98 -0.62 -30.42 By element: Atomic # 1 Polarization: -15.32 SS G_CDS: 0.43 Total: -14.89 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 4.30 Total: 7.95 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -7.29 Total: -44.27 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.73 Total: -0.51 kcal Atomic # 14 Polarization: -5.57 SS G_CDS: 2.05 Total: -3.53 kcal Atomic # 16 Polarization: 25.67 SS G_CDS: -0.28 Total: 25.39 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.56 Total: -0.56 kcal Total: -29.80 -0.62 -30.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79621_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.426 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds