Wall clock time and date at job start Tue Mar 9 2021 12:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35987 * 117.00096 * 2 1 4 4 C 1.38549 * 120.06869 * 0.27874 * 3 2 1 5 5 C 1.38287 * 120.01345 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.91884 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.47469 * 64.99768 * 6 5 4 8 8 Si 1.86298 * 109.46677 * 184.99746 * 6 5 4 9 9 H 1.48501 * 109.47604 * 59.99897 * 8 6 5 10 10 H 1.48499 * 109.47080 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47237 * 299.99934 * 8 6 5 12 12 C 1.38208 * 120.15048 * 359.97371 * 5 4 3 13 13 C 1.38353 * 120.13899 * 0.02562 * 12 5 4 14 14 Br 1.89098 * 120.00545 * 180.02562 * 13 12 5 15 15 C 1.38600 * 119.98299 * 359.72478 * 13 12 5 16 16 O 1.36014 * 120.07195 * 180.02562 * 15 13 12 17 17 S 1.52196 * 114.00016 * 90.00603 * 16 15 13 18 18 O 1.42100 * 106.40327 * 188.53885 * 17 16 15 19 19 O 1.42107 * 106.40017 * 321.45355 * 17 16 15 20 20 C 1.76197 * 107.22126 * 74.99361 * 17 16 15 21 21 C 1.38234 * 120.00034 * 270.27695 * 20 17 16 22 22 C 1.38236 * 119.99985 * 179.97438 * 21 20 17 23 23 C 1.38242 * 120.00061 * 359.97438 * 22 21 20 24 Xx 1.80994 * 120.00091 * 179.97438 * 23 22 21 25 24 F 6.69324 * 58.72754 * 129.98827 * 2 1 3 26 25 F 1.61000 * 89.99795 * 134.99560 * 24 23 22 27 26 F 1.60998 * 90.00302 * 315.00051 * 24 23 22 28 27 F 1.60998 * 90.00243 * 224.99669 * 24 23 22 29 28 F 1.61004 * 90.00051 * 44.99722 * 24 23 22 30 29 C 1.38240 * 119.99602 * 359.95233 * 23 22 21 31 30 C 1.38231 * 119.99978 * 359.85917 * 30 23 22 32 31 H 1.09001 * 109.47103 * 300.00410 * 1 2 3 33 32 H 1.09004 * 109.47054 * 59.99914 * 1 2 3 34 33 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 35 34 H 1.07994 * 119.99103 * 359.97231 * 4 3 2 36 35 H 1.09000 * 109.47141 * 304.99128 * 6 5 4 37 36 H 0.96695 * 113.99980 * 179.97438 * 7 6 5 38 37 H 1.07999 * 119.92305 * 180.02562 * 12 5 4 39 38 H 1.08002 * 120.00155 * 359.97133 * 21 20 17 40 39 H 1.08004 * 119.99969 * 179.97438 * 22 21 20 41 40 H 1.07996 * 119.99358 * 180.02562 * 30 23 22 42 41 H 1.08001 * 119.99965 * 179.97438 * 31 30 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3745 0.0058 5 6 1.9223 3.6060 0.0053 6 6 1.1010 4.8696 0.0111 7 8 0.3692 4.9565 1.2354 8 14 2.2290 6.3440 -0.1442 9 1 2.9896 6.2538 -1.4165 10 1 1.4198 7.5891 -0.1392 11 1 3.1770 6.3646 0.9987 12 6 3.3023 3.6807 -0.0005 13 6 4.0606 2.5234 -0.0063 14 35 5.9485 2.6299 -0.0135 15 6 3.4360 1.2861 -0.0006 16 8 4.1797 0.1473 -0.0058 17 16 4.5291 -0.3703 1.3822 18 8 5.4597 -1.4275 1.1938 19 8 4.8033 0.7736 2.1796 20 6 3.0715 -1.1030 2.0479 21 6 2.1826 -0.3349 2.7763 22 6 1.0388 -0.9097 3.2982 23 6 0.7837 -2.2525 3.0910 24 9 -2.0455 -3.6763 4.3831 25 9 -0.9768 -3.7541 2.3741 26 9 -0.4505 -2.2563 5.1755 27 9 0.1518 -4.2634 4.2849 28 9 -1.5791 -1.7471 3.2648 29 6 1.6720 -3.0202 2.3612 30 6 2.8137 -2.4445 1.8362 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2148 2.3191 0.0099 35 1 0.4052 4.8545 -0.8279 36 1 -0.1826 5.7472 1.3084 37 1 3.7898 4.6444 -0.0005 38 1 2.3817 0.7142 2.9379 39 1 0.3444 -0.3097 3.8677 40 1 1.4724 -4.0691 2.1991 41 1 3.5079 -3.0444 1.2664 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79621_8643202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:22 Heat of formation + Delta-G solvation = 287.284599 kcal Electronic energy + Delta-G solvation = -43439.814684 eV Core-core repulsion = 36825.179288 eV Total energy + Delta-G solvation = -6614.635396 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 495.966 amu Computer time = 24.53 seconds Orbital eigenvalues (eV) -44.44480 -44.28753 -44.25198 -44.14412 -43.62649 -42.84201 -41.32340 -40.54465 -39.29305 -38.80513 -37.45722 -37.35025 -33.66329 -33.26027 -33.08073 -32.22157 -30.57835 -28.67443 -27.10177 -24.87546 -24.80394 -23.84497 -23.53090 -21.98515 -20.55584 -19.74053 -19.15974 -18.73014 -18.45042 -18.23209 -17.59729 -16.98376 -16.79868 -16.77574 -16.62478 -16.09052 -16.06117 -15.63929 -15.57769 -15.54734 -15.36494 -15.16670 -14.81054 -14.75104 -14.70292 -14.54719 -14.40181 -14.26527 -14.25331 -14.20097 -14.18073 -14.08502 -13.96015 -13.80560 -13.75473 -13.66781 -13.64888 -13.51982 -13.26812 -13.08606 -12.81022 -12.73390 -12.64630 -12.40429 -12.36584 -12.06725 -12.01375 -11.86630 -11.75160 -11.63362 -11.52929 -11.44586 -11.10007 -10.42489 -10.12995 -9.73363 -5.31507 -4.84967 -3.49242 -1.61437 -1.31189 -0.77956 -0.49011 -0.29581 0.07898 0.80283 1.12393 1.36116 1.46914 1.52771 1.77709 1.92048 1.96201 2.14470 2.38356 2.51275 2.65408 3.00450 3.12549 3.21369 3.37093 3.43094 3.55746 3.67121 3.74036 3.79675 3.89151 3.93738 4.12706 4.15442 4.25082 4.32404 4.33649 4.38908 4.55011 4.57524 4.59033 4.73152 4.91481 5.02159 5.85008 6.80692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.309 6.309 3 C 0.148 3.852 4 C -0.141 4.141 5 C -0.001 4.001 6 C -0.073 4.073 7 O -0.552 6.552 8 Si 0.938 3.062 9 H -0.253 1.253 10 H -0.249 1.249 11 H -0.264 1.264 12 C -0.126 4.126 13 C -0.040 4.040 14 Br -0.017 7.017 15 C 0.028 3.972 16 O -0.633 6.633 17 S 2.674 3.326 18 O -0.930 6.930 19 O -0.937 6.937 20 C -0.684 4.684 21 C 0.054 3.946 22 C -0.123 4.123 23 C 0.391 3.609 24 F -0.204 7.204 25 F -0.154 7.154 26 F -0.165 7.165 27 F -0.166 7.166 28 F -0.150 7.150 29 C -0.122 4.122 30 C 0.065 3.935 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.188 0.812 35 H 0.123 0.877 36 H 0.405 0.595 37 H 0.151 0.849 38 H 0.213 0.787 39 H 0.207 0.793 40 H 0.204 0.796 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 9.440 -7.186 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.221 6.221 3 C 0.098 3.902 4 C -0.160 4.160 5 C -0.003 4.003 6 C -0.184 4.184 7 O -0.362 6.362 8 Si 0.763 3.237 9 H -0.177 1.177 10 H -0.173 1.173 11 H -0.188 1.188 12 C -0.145 4.145 13 C -0.122 4.122 14 Br 0.069 6.931 15 C -0.017 4.017 16 O -0.592 6.592 17 S 2.765 3.235 18 O -0.929 6.929 19 O -0.936 6.936 20 C -0.766 4.766 21 C 0.036 3.964 22 C -0.140 4.140 23 C 0.385 3.615 24 F -0.204 7.204 25 F -0.153 7.153 26 F -0.164 7.164 27 F -0.165 7.165 28 F -0.148 7.148 29 C -0.140 4.140 30 C 0.047 3.953 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.205 0.795 35 H 0.141 0.859 36 H 0.257 0.743 37 H 0.169 0.831 38 H 0.229 0.771 39 H 0.223 0.777 40 H 0.221 0.779 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.384 9.509 -7.371 12.266 hybrid contribution -2.561 -0.973 0.809 2.857 sum -0.177 8.537 -6.562 10.769 Atomic orbital electron populations 1.23732 0.74814 1.06580 1.04366 1.86192 1.24420 1.24212 1.87317 1.18857 0.88637 0.87378 0.95336 1.21501 1.02790 0.88815 1.02850 1.19531 0.91718 0.95590 0.93494 1.24556 1.01271 1.00474 0.92122 1.86424 1.63763 1.50150 1.35889 0.85813 0.79501 0.77521 0.80886 1.17711 1.17280 1.18848 1.21060 0.93796 0.97268 1.02424 1.21756 0.92441 0.93953 1.04086 1.96905 1.00496 1.98744 1.96944 1.16956 0.86636 0.81112 1.17013 1.85798 1.72238 1.45507 1.55620 1.02985 0.73602 0.74203 0.72738 1.93670 1.58094 1.56980 1.84126 1.93709 1.82676 1.47977 1.69217 1.31773 1.23959 1.06265 1.14597 1.21513 0.85130 1.01785 0.87992 1.22092 0.99146 0.89923 1.02868 1.27926 0.54612 0.85812 0.93106 2.00000 1.93385 1.39887 1.87099 1.99921 1.90673 1.61364 1.63313 1.99920 1.98961 1.39580 1.77922 1.99920 1.73347 1.48580 1.94644 1.99919 1.94201 1.21292 1.99409 1.22159 0.89496 1.05852 0.96465 1.21542 0.90568 0.91834 0.91351 0.89940 0.89465 0.86581 0.79481 0.85942 0.74285 0.83122 0.77051 0.77672 0.77907 0.76378 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 443. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.31 3.14 7.78 -79.54 -0.62 2.52 16 3 C 0.15 -1.17 5.67 22.57 0.13 -1.04 16 4 C -0.14 1.55 8.67 22.36 0.19 1.74 16 5 C 0.00 0.01 5.38 -19.86 -0.11 -0.10 16 6 C -0.07 0.90 2.79 71.24 0.20 1.09 16 7 O -0.55 6.63 12.81 -148.98 -1.91 4.73 16 8 Si 0.94 -7.83 25.13 68.60 1.72 -6.11 16 9 H -0.25 1.62 7.11 99.48 0.71 2.33 16 10 H -0.25 1.96 7.11 99.48 0.71 2.67 16 11 H -0.26 1.08 7.04 99.48 0.70 1.78 16 12 C -0.13 0.54 8.40 22.29 0.19 0.73 16 13 C -0.04 0.04 5.63 22.38 0.13 0.16 16 14 Br -0.02 -0.04 31.83 -20.37 -0.65 -0.69 16 15 C 0.03 -0.07 4.79 22.58 0.11 0.03 16 16 O -0.63 0.76 9.30 -60.85 -0.57 0.20 16 17 S 2.67 -3.81 5.30 -56.49 -0.30 -4.11 16 18 O -0.93 -3.28 17.27 -118.78 -2.05 -5.33 16 19 O -0.94 -0.91 14.49 -118.78 -1.72 -2.63 16 20 C -0.68 5.53 4.24 22.27 0.09 5.62 16 21 C 0.05 -0.58 7.70 22.27 0.17 -0.41 16 22 C -0.12 1.10 8.62 22.27 0.19 1.29 16 23 C 0.39 -1.32 4.82 22.27 0.11 -1.22 16 24 F -0.20 -4.47 16.67 44.97 0.75 -3.72 16 25 F -0.15 -1.54 15.31 44.97 0.69 -0.85 16 26 F -0.17 -2.00 15.31 44.97 0.69 -1.31 16 27 F -0.17 -2.10 15.31 44.97 0.69 -1.42 16 28 F -0.15 -1.28 15.31 44.97 0.69 -0.59 16 29 C -0.12 1.01 8.62 22.27 0.19 1.21 16 30 C 0.06 -0.69 9.52 22.27 0.21 -0.48 16 31 H 0.08 -1.41 7.65 -2.39 -0.02 -1.43 16 32 H 0.09 -1.48 7.68 -2.38 -0.02 -1.50 16 33 H 0.12 -1.67 8.14 -2.39 -0.02 -1.69 16 34 H 0.19 -3.15 6.30 -2.91 -0.02 -3.16 16 35 H 0.12 -2.22 7.96 -2.39 -0.02 -2.24 16 36 H 0.41 -7.91 8.74 -74.06 -0.65 -8.56 16 37 H 0.15 -0.80 4.85 -2.91 -0.01 -0.81 16 38 H 0.21 -3.24 7.62 -2.91 -0.02 -3.26 16 39 H 0.21 -2.40 7.40 -2.91 -0.02 -2.42 16 40 H 0.20 -2.10 7.40 -2.91 -0.02 -2.12 16 41 H 0.22 -3.41 7.62 -2.91 -0.02 -3.44 16 Total: 0.00 -34.98 399.12 1.60 -33.38 By element: Atomic # 1 Polarization: -25.11 SS G_CDS: 1.27 Total: -23.84 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 2.92 Total: 9.77 kcal Atomic # 8 Polarization: 6.34 SS G_CDS: -6.87 Total: -0.52 kcal Atomic # 9 Polarization: -11.38 SS G_CDS: 3.50 Total: -7.88 kcal Atomic # 14 Polarization: -7.83 SS G_CDS: 1.72 Total: -6.11 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -0.30 Total: -4.11 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -0.65 Total: -0.69 kcal Total: -34.98 1.60 -33.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79621_8643202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 320.665 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 285.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 287.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.53 seconds