Wall clock time and date at job start Tue Mar 9 2021 13:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35992 * 116.99565 * 2 1 4 4 C 1.38670 * 119.99783 * 0.02562 * 3 2 1 5 5 C 1.38154 * 119.99915 * 179.97438 * 4 3 2 6 6 C 1.38681 * 119.99691 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99886 * 180.02562 * 6 5 4 8 8 S 1.52199 * 113.99790 * 270.01754 * 7 6 5 9 9 O 1.42099 * 104.27555 * 191.07113 * 8 7 6 10 10 O 1.42103 * 104.27558 * 318.92888 * 8 7 6 11 11 C 1.81397 * 104.44948 * 75.00223 * 8 7 6 12 12 C 1.53004 * 109.47310 * 179.97438 * 11 8 7 13 13 C 1.52997 * 109.47042 * 179.97438 * 12 11 8 14 14 Si 1.86305 * 109.46730 * 179.97438 * 13 12 11 15 15 C 1.86305 * 109.47252 * 60.00385 * 14 13 12 16 16 C 1.86303 * 109.47042 * 180.02562 * 14 13 12 17 17 C 1.86301 * 109.47363 * 300.00375 * 14 13 12 18 18 C 1.38712 * 120.00083 * 0.02562 * 6 5 4 19 19 C 1.50701 * 119.99957 * 179.97438 * 18 6 5 20 20 O 1.42895 * 109.47079 * 75.00898 * 19 18 6 21 21 Si 1.86301 * 109.47149 * 195.00393 * 19 18 6 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 C 1.38110 * 119.99936 * 0.24058 * 18 6 5 26 26 H 1.08997 * 109.46779 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46818 * 299.99390 * 1 2 3 28 28 H 1.08993 * 109.47435 * 59.99660 * 1 2 3 29 29 H 1.07996 * 120.00591 * 359.97438 * 4 3 2 30 30 H 1.08000 * 120.00545 * 179.97438 * 5 4 3 31 31 H 1.09006 * 109.46831 * 299.99800 * 11 8 7 32 32 H 1.08996 * 109.47438 * 59.99742 * 11 8 7 33 33 H 1.08998 * 109.46867 * 300.00356 * 12 11 8 34 34 H 1.09011 * 109.46721 * 59.99871 * 12 11 8 35 35 H 1.08997 * 109.47442 * 299.99847 * 13 12 11 36 36 H 1.08997 * 109.47211 * 60.00675 * 13 12 11 37 37 H 1.09003 * 109.46541 * 59.99524 * 15 14 13 38 38 H 1.08993 * 109.47255 * 179.97438 * 15 14 13 39 39 H 1.09000 * 109.46817 * 300.00146 * 15 14 13 40 40 H 1.08996 * 109.47367 * 59.99888 * 16 14 13 41 41 H 1.09000 * 109.47418 * 180.02562 * 16 14 13 42 42 H 1.09006 * 109.46860 * 299.99972 * 16 14 13 43 43 H 1.09000 * 109.47027 * 59.99657 * 17 14 13 44 44 H 1.08993 * 109.47135 * 180.02562 * 17 14 13 45 45 H 1.09003 * 109.46539 * 299.99644 * 17 14 13 46 46 H 1.09001 * 109.47380 * 315.00295 * 19 18 6 47 47 H 0.96708 * 113.99763 * 299.99687 * 20 19 18 48 48 H 1.08008 * 119.99731 * 179.72155 * 25 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2909 2.3746 0.0005 5 6 1.9180 3.6057 0.0011 6 6 3.3029 3.6783 0.0005 7 8 3.9202 4.8900 0.0016 8 16 4.2002 5.4433 -1.3884 9 8 5.0611 6.5500 -1.1581 10 8 4.6400 4.3153 -2.1324 11 6 2.5830 6.0082 -1.9849 12 6 2.7337 6.5934 -3.3905 13 6 1.3696 7.0693 -3.8939 14 14 1.5534 7.7825 -5.6051 15 6 2.2180 6.4756 -6.7546 16 6 -0.1076 8.3627 -6.2178 17 6 2.7337 9.2230 -5.5541 18 6 4.0585 2.5150 -0.0011 19 6 5.5634 2.5940 -0.0022 20 8 6.0219 2.9658 1.2991 21 14 6.2721 0.9327 -0.4590 22 1 5.7957 0.5460 -1.8113 23 1 5.8305 -0.0829 0.5304 24 1 7.7551 1.0103 -0.4595 25 6 3.4315 1.2844 -0.0072 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2125 2.3181 0.0005 30 1 1.3298 4.5114 0.0011 31 1 1.8918 5.1657 -2.0139 32 1 2.1949 6.7735 -1.3129 33 1 3.4248 7.4358 -3.3611 34 1 3.1221 5.8282 -4.0629 35 1 0.6789 6.2266 -3.9233 36 1 0.9809 7.8343 -3.2217 37 1 1.5274 5.6328 -6.7844 38 1 2.3251 6.8927 -7.7558 39 1 3.1899 6.1365 -6.3959 40 1 -0.4961 9.1274 -5.5453 41 1 -0.0002 8.7796 -7.2192 42 1 -0.7984 7.5201 -6.2476 43 1 3.7056 8.8839 -5.1954 44 1 2.8409 9.6405 -6.5552 45 1 2.3448 9.9877 -4.8816 46 1 5.8876 3.3394 -0.7285 47 1 5.6914 3.8225 1.6026 48 1 4.0199 0.3787 -0.0130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79633_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:27 Heat of formation + Delta-G solvation = -195.490011 kcal Electronic energy + Delta-G solvation = -29746.432501 eV Core-core repulsion = 25632.313987 eV Total energy + Delta-G solvation = -4114.118514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.56842 -40.82686 -38.58877 -38.21987 -37.37471 -37.09202 -36.04471 -33.09913 -31.13842 -29.79931 -28.68157 -28.53631 -28.48295 -28.38436 -26.83124 -24.73344 -23.16227 -22.97563 -21.48185 -19.66588 -19.43105 -18.84115 -18.69029 -17.98069 -17.48396 -17.00696 -16.95576 -16.34214 -15.99805 -15.77028 -15.59717 -15.43098 -14.98829 -14.66016 -14.33646 -14.27362 -14.18399 -14.11880 -14.04660 -14.03606 -13.74161 -13.68226 -13.49537 -13.44980 -13.32847 -13.26695 -13.21516 -13.16370 -13.15774 -13.12935 -12.53092 -12.26255 -12.10376 -12.06323 -11.92134 -11.72462 -11.33079 -11.05228 -10.91089 -10.87588 -10.64157 -10.34312 -9.52574 -1.10925 -0.18743 -0.10194 0.96557 1.22620 1.61105 1.63388 1.64561 1.76822 1.78321 1.94726 2.03229 2.15855 2.46763 2.55444 2.83981 3.25595 3.31343 3.36564 3.49946 3.63875 3.75462 3.83162 3.87606 3.92808 4.00519 4.01319 4.10563 4.21932 4.31699 4.38595 4.42342 4.55577 4.60370 4.63968 4.65326 4.69079 4.69542 4.70836 4.72423 4.75193 4.82047 4.85866 4.93038 5.16202 5.25699 5.39732 5.48125 5.50375 6.01857 6.53364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.307 6.307 3 C 0.160 3.840 4 C -0.191 4.191 5 C -0.081 4.081 6 C 0.033 3.967 7 O -0.660 6.660 8 S 2.577 3.423 9 O -0.923 6.923 10 O -0.945 6.945 11 C -0.647 4.647 12 C -0.102 4.102 13 C -0.406 4.406 14 Si 1.002 2.998 15 C -0.453 4.453 16 C -0.449 4.449 17 C -0.454 4.454 18 C -0.037 4.037 19 C -0.114 4.114 20 O -0.530 6.530 21 Si 1.018 2.982 22 H -0.239 1.239 23 H -0.248 1.248 24 H -0.249 1.249 25 C -0.140 4.140 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.371 0.629 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 -0.762 -1.503 7.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.219 6.219 3 C 0.113 3.887 4 C -0.210 4.210 5 C -0.101 4.101 6 C -0.009 4.009 7 O -0.619 6.619 8 S 2.674 3.326 9 O -0.921 6.921 10 O -0.944 6.944 11 C -0.774 4.774 12 C -0.140 4.140 13 C -0.491 4.491 14 Si 1.199 2.801 15 C -0.561 4.561 16 C -0.557 4.557 17 C -0.561 4.561 18 C -0.040 4.040 19 C -0.221 4.221 20 O -0.336 6.336 21 Si 0.835 3.165 22 H -0.162 1.162 23 H -0.172 1.172 24 H -0.173 1.173 25 C -0.159 4.159 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.219 0.781 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.967 -2.323 -1.531 6.584 hybrid contribution -1.633 1.760 0.192 2.409 sum -7.600 -0.563 -1.339 7.737 Atomic orbital electron populations 1.23240 0.77253 1.05010 1.01843 1.86173 1.22284 1.25911 1.87536 1.19043 0.91942 0.84810 0.92884 1.21170 1.01018 0.90913 1.07880 1.21125 0.91830 0.99365 0.97804 1.17662 0.90501 0.79814 1.12938 1.85735 1.79045 1.39618 1.57464 1.06097 0.77667 0.75260 0.73593 1.93671 1.61818 1.54178 1.82427 1.93640 1.79525 1.49155 1.72067 1.30910 1.24468 1.12791 1.09261 1.20984 1.00026 1.01490 0.91530 1.26163 0.98072 1.06805 1.18091 0.79328 0.67390 0.67249 0.66160 1.26173 1.06638 1.12443 1.10807 1.26105 1.17246 1.05997 1.06317 1.26178 1.11056 1.14222 1.04669 1.20187 0.97351 0.91215 0.95250 1.25732 0.91216 1.15775 0.89353 1.86732 1.73421 1.42238 1.31193 0.84441 0.80243 0.71706 0.80099 1.16239 1.17160 1.17259 1.20325 0.92132 0.97749 1.05681 0.87414 0.92017 0.92004 0.83389 0.83522 0.84645 0.84268 0.89910 0.89841 0.90072 0.90011 0.91185 0.91078 0.91086 0.91249 0.91116 0.91283 0.91087 0.91073 0.91142 0.89113 0.78067 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 101.05 0.99 0.91 16 2 O -0.31 0.00 10.50 -19.71 -0.21 -0.21 16 3 C 0.16 0.06 6.69 -39.25 -0.26 -0.20 16 4 C -0.19 0.32 9.03 -39.45 -0.36 -0.04 16 5 C -0.08 0.11 8.45 -39.45 -0.33 -0.22 16 6 C 0.03 0.04 4.74 -39.24 -0.19 -0.15 16 7 O -0.66 -0.88 9.04 -52.02 -0.47 -1.35 16 8 S 2.58 4.18 4.93 -107.50 -0.53 3.65 16 9 O -0.92 -4.53 18.09 -67.04 -1.21 -5.74 16 10 O -0.95 -3.14 14.24 -67.04 -0.95 -4.09 16 11 C -0.65 1.36 5.46 37.16 0.20 1.56 16 12 C -0.10 0.18 4.59 -26.73 -0.12 0.06 16 13 C -0.41 1.22 4.45 37.16 0.17 1.39 16 14 Si 1.00 -3.28 12.19 -169.99 -2.07 -5.36 16 15 C -0.45 0.86 8.65 101.05 0.87 1.73 16 16 C -0.45 0.98 8.65 101.05 0.87 1.85 16 17 C -0.45 0.80 8.65 101.05 0.87 1.67 16 18 C -0.04 -0.09 4.68 -104.49 -0.49 -0.58 16 19 C -0.11 -0.35 2.19 36.01 0.08 -0.28 16 20 O -0.53 -1.68 12.65 -35.23 -0.45 -2.13 16 21 Si 1.02 2.19 25.73 -169.99 -4.37 -2.18 16 22 H -0.24 -0.39 7.11 56.52 0.40 0.01 16 23 H -0.25 -0.43 6.74 56.52 0.38 -0.05 16 24 H -0.25 -0.69 7.11 56.52 0.40 -0.28 16 25 C -0.14 -0.24 8.59 -39.45 -0.34 -0.58 16 26 H 0.11 -0.53 8.14 -51.93 -0.42 -0.96 16 27 H 0.06 -0.29 7.66 -51.93 -0.40 -0.69 16 28 H 0.06 -0.31 7.66 -51.93 -0.40 -0.70 16 29 H 0.15 -0.68 6.29 -52.49 -0.33 -1.01 16 30 H 0.15 -0.67 7.48 -52.49 -0.39 -1.06 16 31 H 0.14 -0.55 6.60 -51.92 -0.34 -0.89 16 32 H 0.14 -0.56 8.14 -51.93 -0.42 -0.98 16 33 H 0.08 -0.19 7.79 -51.93 -0.40 -0.59 16 34 H 0.08 -0.21 7.79 -51.92 -0.40 -0.62 16 35 H 0.08 -0.30 7.96 -51.93 -0.41 -0.71 16 36 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 37 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 39 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 41 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 43 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 44 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 45 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 46 H 0.09 0.29 5.42 -51.93 -0.28 0.01 16 47 H 0.37 0.35 8.60 45.56 0.39 0.74 16 48 H 0.15 0.13 4.88 -52.48 -0.26 -0.12 16 LS Contribution 396.69 15.07 5.98 5.98 Total: 0.00 -8.42 396.69 -9.33 -17.74 By element: Atomic # 1 Polarization: -6.46 SS G_CDS: -7.01 Total: -13.46 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 1.97 Total: 7.14 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -3.29 Total: -13.51 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: -6.45 Total: -7.54 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -0.53 Total: 3.65 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -8.42 -9.33 -17.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79633_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.748 kcal (2) G-P(sol) polarization free energy of solvation -8.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds