Wall clock time and date at job start Tue Mar 9 2021 13:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35992 * 116.99565 * 2 1 4 4 C 1.38670 * 119.99783 * 0.02562 * 3 2 1 5 5 C 1.38154 * 119.99915 * 179.97438 * 4 3 2 6 6 C 1.38681 * 119.99691 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99886 * 180.02562 * 6 5 4 8 8 S 1.52199 * 113.99790 * 270.01754 * 7 6 5 9 9 O 1.42099 * 104.27555 * 191.07113 * 8 7 6 10 10 O 1.42103 * 104.27558 * 318.92888 * 8 7 6 11 11 C 1.81397 * 104.44948 * 75.00223 * 8 7 6 12 12 C 1.53004 * 109.47310 * 179.97438 * 11 8 7 13 13 C 1.52997 * 109.47042 * 179.97438 * 12 11 8 14 14 Si 1.86305 * 109.46730 * 179.97438 * 13 12 11 15 15 C 1.86305 * 109.47252 * 60.00385 * 14 13 12 16 16 C 1.86303 * 109.47042 * 180.02562 * 14 13 12 17 17 C 1.86301 * 109.47363 * 300.00375 * 14 13 12 18 18 C 1.38712 * 120.00083 * 0.02562 * 6 5 4 19 19 C 1.50701 * 119.99957 * 179.97438 * 18 6 5 20 20 O 1.42895 * 109.47079 * 75.00898 * 19 18 6 21 21 Si 1.86301 * 109.47149 * 195.00393 * 19 18 6 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 C 1.38110 * 119.99936 * 0.24058 * 18 6 5 26 26 H 1.08997 * 109.46779 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46818 * 299.99390 * 1 2 3 28 28 H 1.08993 * 109.47435 * 59.99660 * 1 2 3 29 29 H 1.07996 * 120.00591 * 359.97438 * 4 3 2 30 30 H 1.08000 * 120.00545 * 179.97438 * 5 4 3 31 31 H 1.09006 * 109.46831 * 299.99800 * 11 8 7 32 32 H 1.08996 * 109.47438 * 59.99742 * 11 8 7 33 33 H 1.08998 * 109.46867 * 300.00356 * 12 11 8 34 34 H 1.09011 * 109.46721 * 59.99871 * 12 11 8 35 35 H 1.08997 * 109.47442 * 299.99847 * 13 12 11 36 36 H 1.08997 * 109.47211 * 60.00675 * 13 12 11 37 37 H 1.09003 * 109.46541 * 59.99524 * 15 14 13 38 38 H 1.08993 * 109.47255 * 179.97438 * 15 14 13 39 39 H 1.09000 * 109.46817 * 300.00146 * 15 14 13 40 40 H 1.08996 * 109.47367 * 59.99888 * 16 14 13 41 41 H 1.09000 * 109.47418 * 180.02562 * 16 14 13 42 42 H 1.09006 * 109.46860 * 299.99972 * 16 14 13 43 43 H 1.09000 * 109.47027 * 59.99657 * 17 14 13 44 44 H 1.08993 * 109.47135 * 180.02562 * 17 14 13 45 45 H 1.09003 * 109.46539 * 299.99644 * 17 14 13 46 46 H 1.09001 * 109.47380 * 315.00295 * 19 18 6 47 47 H 0.96708 * 113.99763 * 299.99687 * 20 19 18 48 48 H 1.08008 * 119.99731 * 179.72155 * 25 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2909 2.3746 0.0005 5 6 1.9180 3.6057 0.0011 6 6 3.3029 3.6783 0.0005 7 8 3.9202 4.8900 0.0016 8 16 4.2002 5.4433 -1.3884 9 8 5.0611 6.5500 -1.1581 10 8 4.6400 4.3153 -2.1324 11 6 2.5830 6.0082 -1.9849 12 6 2.7337 6.5934 -3.3905 13 6 1.3696 7.0693 -3.8939 14 14 1.5534 7.7825 -5.6051 15 6 2.2180 6.4756 -6.7546 16 6 -0.1076 8.3627 -6.2178 17 6 2.7337 9.2230 -5.5541 18 6 4.0585 2.5150 -0.0011 19 6 5.5634 2.5940 -0.0022 20 8 6.0219 2.9658 1.2991 21 14 6.2721 0.9327 -0.4590 22 1 5.7957 0.5460 -1.8113 23 1 5.8305 -0.0829 0.5304 24 1 7.7551 1.0103 -0.4595 25 6 3.4315 1.2844 -0.0072 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2125 2.3181 0.0005 30 1 1.3298 4.5114 0.0011 31 1 1.8918 5.1657 -2.0139 32 1 2.1949 6.7735 -1.3129 33 1 3.4248 7.4358 -3.3611 34 1 3.1221 5.8282 -4.0629 35 1 0.6789 6.2266 -3.9233 36 1 0.9809 7.8343 -3.2217 37 1 1.5274 5.6328 -6.7844 38 1 2.3251 6.8927 -7.7558 39 1 3.1899 6.1365 -6.3959 40 1 -0.4961 9.1274 -5.5453 41 1 -0.0002 8.7796 -7.2192 42 1 -0.7984 7.5201 -6.2476 43 1 3.7056 8.8839 -5.1954 44 1 2.8409 9.6405 -6.5552 45 1 2.3448 9.9877 -4.8816 46 1 5.8876 3.3394 -0.7285 47 1 5.6914 3.8225 1.6026 48 1 4.0199 0.3787 -0.0130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79633_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:26 Heat of formation + Delta-G solvation = -193.367532 kcal Electronic energy + Delta-G solvation = -29746.340463 eV Core-core repulsion = 25632.313987 eV Total energy + Delta-G solvation = -4114.026476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54966 -40.73607 -38.64415 -38.36057 -37.46525 -37.20586 -35.85037 -33.06405 -31.05894 -29.61019 -28.46384 -28.32439 -28.30704 -28.18275 -26.85946 -24.65808 -23.17104 -22.78378 -21.44143 -19.69555 -19.40441 -18.83280 -18.72156 -18.10589 -17.45884 -16.91893 -16.76846 -16.37465 -15.95177 -15.76157 -15.59154 -15.45270 -14.85013 -14.62100 -14.19239 -14.15545 -14.11671 -14.03191 -13.96074 -13.91175 -13.57541 -13.54603 -13.43533 -13.38931 -13.33060 -13.25724 -13.15014 -13.04694 -12.97762 -12.97203 -12.38565 -12.28329 -12.08409 -11.90672 -11.81867 -11.78822 -11.41020 -11.23086 -10.70719 -10.68168 -10.42252 -10.30551 -9.45675 -1.12700 -0.13144 -0.06494 0.94380 1.04485 1.40509 1.44016 1.82102 1.92317 2.00838 2.02417 2.12501 2.21477 2.48401 2.74053 2.82513 3.27699 3.44863 3.51796 3.64595 3.69602 3.79292 3.90146 4.00133 4.12167 4.18240 4.29482 4.36231 4.42559 4.43841 4.58376 4.64814 4.77097 4.79452 4.81452 4.83764 4.86577 4.87717 4.88055 4.88779 4.89240 4.93415 4.96440 5.10683 5.34420 5.46180 5.60398 5.66720 5.67371 6.18685 6.39870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.327 6.327 3 C 0.154 3.846 4 C -0.180 4.180 5 C -0.073 4.073 6 C 0.014 3.986 7 O -0.662 6.662 8 S 2.566 3.434 9 O -0.970 6.970 10 O -0.973 6.973 11 C -0.624 4.624 12 C -0.122 4.122 13 C -0.407 4.407 14 Si 1.068 2.932 15 C -0.474 4.474 16 C -0.462 4.462 17 C -0.476 4.476 18 C -0.058 4.058 19 C -0.125 4.125 20 O -0.542 6.542 21 Si 1.028 2.972 22 H -0.235 1.235 23 H -0.244 1.244 24 H -0.263 1.263 25 C -0.162 4.162 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.184 0.816 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.377 0.623 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 -0.569 -1.277 10.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.239 6.239 3 C 0.106 3.894 4 C -0.199 4.199 5 C -0.093 4.093 6 C -0.028 4.028 7 O -0.621 6.621 8 S 2.668 3.332 9 O -0.968 6.968 10 O -0.972 6.972 11 C -0.755 4.755 12 C -0.161 4.161 13 C -0.493 4.493 14 Si 1.260 2.740 15 C -0.579 4.579 16 C -0.569 4.569 17 C -0.582 4.582 18 C -0.061 4.061 19 C -0.231 4.231 20 O -0.349 6.349 21 Si 0.846 3.154 22 H -0.158 1.158 23 H -0.167 1.167 24 H -0.188 1.188 25 C -0.181 4.181 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.201 0.799 30 H 0.203 0.797 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.226 0.774 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.264 -2.136 -1.308 9.597 hybrid contribution -0.674 1.684 0.081 1.816 sum -9.938 -0.452 -1.227 10.024 Atomic orbital electron populations 1.23547 0.75318 1.06230 1.03306 1.86153 1.24370 1.26010 1.87408 1.19177 0.91636 0.85844 0.92694 1.21574 1.02586 0.89808 1.05917 1.21569 0.90688 1.01065 0.95976 1.17944 0.91675 0.79210 1.13929 1.85698 1.79548 1.39727 1.57137 1.06247 0.79267 0.74336 0.73380 1.93606 1.64796 1.55242 1.83178 1.93599 1.81140 1.49950 1.72478 1.30760 1.20859 1.14520 1.09343 1.21224 1.01111 1.01925 0.91804 1.26182 0.97466 1.07792 1.17891 0.78316 0.65309 0.64945 0.65428 1.26433 1.06741 1.13523 1.11243 1.26264 1.18242 1.06260 1.06124 1.26469 1.11756 1.15631 1.04330 1.20168 0.96763 0.92302 0.96868 1.25812 0.92685 1.15752 0.88869 1.86687 1.73849 1.42786 1.31548 0.84312 0.79035 0.71668 0.80416 1.15775 1.16719 1.18785 1.20385 0.93308 0.97393 1.06991 0.86551 0.90623 0.90330 0.79851 0.79672 0.81832 0.81521 0.89988 0.89535 0.88447 0.88713 0.90870 0.91677 0.91520 0.91055 0.91765 0.90919 0.91580 0.91654 0.91027 0.90065 0.77352 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 0.25 10.50 -93.46 -0.98 -0.73 16 3 C 0.15 0.01 6.69 22.49 0.15 0.16 16 4 C -0.18 1.08 9.03 22.35 0.20 1.28 16 5 C -0.07 0.39 8.45 22.36 0.19 0.58 16 6 C 0.01 0.03 4.74 22.49 0.11 0.14 16 7 O -0.66 -2.09 9.04 -62.49 -0.56 -2.65 16 8 S 2.57 10.13 4.93 -56.49 -0.28 9.86 16 9 O -0.97 -11.43 18.09 -118.57 -2.15 -13.57 16 10 O -0.97 -8.10 14.24 -118.57 -1.69 -9.79 16 11 C -0.62 4.02 5.46 71.98 0.39 4.42 16 12 C -0.12 0.62 4.59 30.59 0.14 0.76 16 13 C -0.41 3.56 4.45 71.98 0.32 3.88 16 14 Si 1.07 -8.05 12.19 68.60 0.84 -7.22 16 15 C -0.47 1.83 8.65 113.37 0.98 2.81 16 16 C -0.46 2.53 8.65 113.37 0.98 3.51 16 17 C -0.48 1.57 8.65 113.37 0.98 2.55 16 18 C -0.06 -0.35 4.68 -19.78 -0.09 -0.45 16 19 C -0.12 -1.07 2.19 71.24 0.16 -0.92 16 20 O -0.54 -4.79 12.65 -148.98 -1.89 -6.68 16 21 Si 1.03 6.74 25.73 68.60 1.77 8.51 16 22 H -0.24 -1.24 7.11 99.48 0.71 -0.53 16 23 H -0.24 -1.31 6.74 99.48 0.67 -0.64 16 24 H -0.26 -2.17 7.11 99.48 0.71 -1.46 16 25 C -0.16 -0.70 8.59 22.35 0.19 -0.51 16 26 H 0.12 -1.34 8.14 -2.39 -0.02 -1.36 16 27 H 0.08 -0.93 7.66 -2.39 -0.02 -0.95 16 28 H 0.08 -1.01 7.66 -2.39 -0.02 -1.03 16 29 H 0.18 -2.50 6.29 -2.91 -0.02 -2.52 16 30 H 0.19 -2.54 7.48 -2.91 -0.02 -2.57 16 31 H 0.16 -1.95 6.60 -2.39 -0.02 -1.97 16 32 H 0.17 -1.92 8.14 -2.39 -0.02 -1.94 16 33 H 0.08 -0.41 7.79 -2.39 -0.02 -0.42 16 34 H 0.09 -0.50 7.79 -2.38 -0.02 -0.52 16 35 H 0.10 -1.10 7.96 -2.39 -0.02 -1.12 16 36 H 0.09 -1.01 7.96 -2.39 -0.02 -1.03 16 37 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 38 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 39 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 40 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 41 H 0.06 -0.26 7.96 -2.39 -0.02 -0.28 16 42 H 0.07 -0.44 7.96 -2.38 -0.02 -0.45 16 43 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 44 H 0.06 -0.15 7.96 -2.39 -0.02 -0.17 16 45 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 46 H 0.08 0.79 5.42 -2.39 -0.01 0.78 16 47 H 0.38 1.70 8.60 -74.05 -0.64 1.07 16 48 H 0.15 0.54 4.88 -2.91 -0.01 0.52 16 Total: 0.00 -23.19 396.69 1.92 -21.28 By element: Atomic # 1 Polarization: -19.28 SS G_CDS: 1.04 Total: -18.24 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 5.81 Total: 19.24 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -7.26 Total: -33.43 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: 2.60 Total: 1.29 kcal Atomic # 16 Polarization: 10.13 SS G_CDS: -0.28 Total: 9.86 kcal Total: -23.19 1.92 -21.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79633_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.090 kcal (2) G-P(sol) polarization free energy of solvation -23.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds