Wall clock time and date at job start Tue Mar 9 2021 13:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47043 * 2 1 4 4 C 1.34229 * 117.00207 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99821 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99926 * 179.97438 * 4 3 2 7 7 H 1.08994 * 112.91064 * 48.75165 * 6 4 3 8 8 C 1.53787 * 113.61150 * 180.02562 * 6 4 3 9 9 C 1.53779 * 87.07963 * 139.98062 * 8 6 4 10 10 F 1.39904 * 113.61465 * 220.01404 * 9 8 6 11 11 C 1.53006 * 113.61477 * 89.11553 * 9 8 6 12 12 S 1.81402 * 109.46999 * 184.99794 * 11 9 8 13 13 O 1.42105 * 110.54127 * 291.62174 * 12 11 9 14 14 O 1.42098 * 110.54104 * 68.37391 * 12 11 9 15 15 O 1.52199 * 104.44588 * 180.02562 * 12 11 9 16 16 C 1.35995 * 114.00117 * 75.00176 * 15 12 11 17 17 C 1.39148 * 120.07598 * 90.00090 * 16 15 12 18 18 O 1.36001 * 120.07344 * 359.97438 * 17 16 15 19 19 C 1.42895 * 116.99879 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.46639 * 179.97438 * 19 18 17 21 21 C 1.38562 * 119.85583 * 180.02562 * 17 16 15 22 22 C 1.38245 * 120.00029 * 359.97438 * 21 17 16 23 23 C 1.50695 * 119.92565 * 180.02562 * 22 21 17 24 24 O 1.42900 * 109.47254 * 65.00183 * 23 22 21 25 25 Si 1.86303 * 109.46858 * 185.00005 * 23 22 21 26 26 C 1.38256 * 120.14390 * 359.97438 * 22 21 17 27 27 C 1.38246 * 120.14653 * 359.76852 * 26 22 21 28 28 C 1.53779 * 87.08402 * 334.56577 * 9 8 6 29 29 H 1.09008 * 109.46622 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47423 * 299.99782 * 1 2 3 31 31 H 1.08996 * 109.47324 * 60.00548 * 1 2 3 32 32 H 1.09000 * 109.46889 * 239.99436 * 2 1 3 33 33 H 1.09002 * 109.46652 * 119.99417 * 2 1 3 34 34 H 1.08997 * 113.61028 * 254.53022 * 8 6 4 35 35 H 1.09000 * 113.61529 * 25.43161 * 8 6 4 36 36 H 1.09001 * 109.46908 * 304.99796 * 11 9 8 37 37 H 1.08996 * 109.47034 * 64.99702 * 11 9 8 38 38 H 1.09001 * 109.47040 * 299.99403 * 19 18 17 39 39 H 1.08994 * 109.47337 * 60.00081 * 19 18 17 40 40 H 1.08994 * 109.47655 * 60.00219 * 20 19 18 41 41 H 1.09002 * 109.47148 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.46937 * 299.99491 * 20 19 18 43 43 H 1.08007 * 119.99952 * 180.02562 * 21 17 16 44 44 H 1.09000 * 109.47370 * 304.99482 * 23 22 21 45 45 H 0.96701 * 113.99894 * 59.99733 * 24 23 22 46 46 H 1.48496 * 109.99922 * 179.97438 * 25 23 22 47 47 H 1.48505 * 110.00122 * 301.31812 * 25 23 22 48 48 H 1.07999 * 119.92612 * 180.02562 * 26 22 21 49 49 H 1.07994 * 119.99879 * 180.24905 * 27 26 22 50 50 H 1.09002 * 113.61557 * 270.88569 * 28 9 8 51 51 H 1.09004 * 113.61501 * 139.97990 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.4707 3.5830 0.7542 8 6 5.4582 2.9682 0.0001 9 6 5.3564 4.1421 -0.9880 10 9 6.3095 4.0976 -2.0112 11 6 5.2762 5.5104 -0.3080 12 16 5.0119 6.7942 -1.5620 13 8 6.1652 6.9372 -2.3800 14 8 3.7175 6.6722 -2.1354 15 8 4.9512 8.0922 -0.7696 16 6 6.1615 8.5278 -0.3279 17 6 6.9273 9.3790 -1.1187 18 8 6.4674 9.7768 -2.3352 19 6 7.3073 10.6504 -3.0923 20 6 6.6278 10.9858 -4.4215 21 6 8.1600 9.8196 -0.6644 22 6 8.6263 9.4139 0.5722 23 6 9.9668 9.8946 1.0648 24 8 9.9234 11.3096 1.2594 25 14 10.3716 9.0579 2.6794 26 6 7.8649 8.5691 1.3583 27 6 6.6318 8.1301 0.9133 28 6 3.9863 3.5764 -1.3973 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8893 3.2436 0.9625 35 1 5.9128 2.0749 -0.4284 36 1 4.4466 5.5167 0.3989 37 1 6.2075 5.7074 0.2230 38 1 7.4782 11.5681 -2.5295 39 1 8.2612 10.1599 -3.2859 40 1 5.6738 11.4762 -4.2283 41 1 7.2686 11.6518 -4.9993 42 1 6.4572 10.0679 -4.9841 43 1 8.7561 10.4807 -1.2761 44 1 10.7329 9.6524 0.3281 45 1 9.2625 11.5979 1.9037 46 1 11.6916 9.5229 3.1755 47 1 9.3180 9.3542 3.6832 48 1 8.2324 8.2547 2.3239 49 1 6.0373 7.4734 1.5310 50 1 4.0385 2.8494 -2.2078 51 1 3.2292 4.3429 -1.5629 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79649_15494190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:22:03 Heat of formation + Delta-G solvation = -239.712682 kcal Electronic energy + Delta-G solvation = -40210.280343 eV Core-core repulsion = 34700.105034 eV Total energy + Delta-G solvation = -5510.175310 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -48.98367 -42.55764 -41.87039 -40.39976 -39.63715 -39.38036 -38.23807 -37.51455 -37.46348 -37.09075 -33.10597 -32.83231 -32.44060 -31.55881 -30.99745 -27.42591 -27.28210 -27.12142 -25.30330 -24.11942 -23.63763 -23.14316 -22.34029 -21.74759 -20.57606 -19.84686 -19.31654 -19.13276 -18.80086 -18.58492 -18.18987 -17.95131 -17.65952 -17.22656 -17.16133 -16.99479 -16.57331 -16.43320 -16.33267 -16.12332 -16.03813 -15.59346 -15.42741 -15.32530 -14.88370 -14.63804 -14.51286 -14.47677 -14.23343 -14.19075 -13.80649 -13.76903 -13.76153 -13.63984 -13.57075 -13.20809 -13.10509 -13.08148 -13.01525 -12.95491 -12.87887 -12.81339 -12.58352 -12.55118 -12.51129 -12.30451 -12.06175 -11.85062 -11.80895 -11.56161 -11.49361 -11.43224 -10.85706 -10.30730 -9.54816 -5.12113 -1.20514 -0.27859 -0.02798 0.96201 1.05406 1.06848 1.42500 1.52299 1.80908 1.88409 2.10867 2.33490 2.54460 2.69827 2.83870 2.92718 3.05585 3.09685 3.17725 3.26401 3.39260 3.47262 3.64783 3.73451 3.76618 3.84351 3.86978 3.90690 3.92959 3.96488 3.98390 4.05902 4.13068 4.21415 4.26367 4.30549 4.31010 4.39023 4.46317 4.54331 4.57646 4.66307 4.66911 4.69763 4.78301 4.81650 4.82907 4.91139 4.99989 5.00135 5.12152 5.27941 5.40038 6.08623 6.19158 6.65933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.354 6.354 4 C 0.475 3.525 5 O -0.500 6.500 6 C -0.108 4.108 7 H 0.136 0.864 8 C -0.120 4.120 9 C 0.105 3.895 10 F -0.178 7.178 11 C -0.675 4.675 12 S 2.592 3.408 13 O -0.922 6.922 14 O -0.915 6.915 15 O -0.647 6.647 16 C 0.027 3.973 17 C 0.172 3.828 18 O -0.297 6.297 19 C 0.050 3.950 20 C -0.156 4.156 21 C -0.170 4.170 22 C -0.055 4.055 23 C -0.082 4.082 24 O -0.525 6.525 25 Si 0.691 3.309 26 C -0.143 4.143 27 C -0.086 4.086 28 C -0.153 4.153 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.149 0.851 44 H 0.126 0.874 45 H 0.378 0.622 46 H -0.253 1.253 47 H -0.256 1.256 48 H 0.146 0.854 49 H 0.152 0.848 50 H 0.116 0.884 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 0.059 4.573 4.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.387 6.387 6 C -0.127 4.127 7 H 0.154 0.846 8 C -0.158 4.158 9 C 0.085 3.915 10 F -0.158 7.158 11 C -0.799 4.799 12 S 2.684 3.316 13 O -0.921 6.921 14 O -0.913 6.913 15 O -0.606 6.606 16 C -0.016 4.016 17 C 0.122 3.878 18 O -0.209 6.209 19 C -0.025 4.025 20 C -0.213 4.213 21 C -0.188 4.188 22 C -0.057 4.057 23 C -0.192 4.192 24 O -0.332 6.332 25 Si 0.592 3.408 26 C -0.161 4.161 27 C -0.106 4.106 28 C -0.191 4.191 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.167 0.833 44 H 0.144 0.856 45 H 0.226 0.774 46 H -0.178 1.178 47 H -0.180 1.180 48 H 0.163 0.837 49 H 0.170 0.830 50 H 0.135 0.865 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.028 0.176 4.235 4.361 hybrid contribution -0.462 0.520 0.564 0.895 sum 0.566 0.695 4.799 4.882 Atomic orbital electron populations 1.21831 0.92197 1.03337 1.03770 1.23128 0.95722 0.79583 1.02866 1.86512 1.23980 1.32999 1.83548 1.23128 0.80914 0.91759 0.72445 1.90702 1.60525 1.42669 1.44816 1.22291 0.97304 0.92247 1.00889 0.84646 1.23607 0.93465 0.98143 1.00620 1.21491 0.88890 0.93367 0.87766 1.93006 1.65708 1.97208 1.59904 1.31339 1.14464 1.13354 1.20733 1.05819 0.75355 0.74868 0.75516 1.93683 1.51804 1.82133 1.64445 1.93656 1.39841 1.84512 1.73325 1.85778 1.38695 1.57623 1.78474 1.17329 0.82829 1.05688 0.95723 1.19002 0.91747 0.91819 0.85228 1.86197 1.46024 1.62576 1.26095 1.23024 0.94194 0.92431 0.92803 1.21820 1.01948 1.03078 0.94438 1.21134 0.95337 1.04300 0.98069 1.20354 0.96599 0.95071 0.93651 1.25175 0.96029 0.86026 1.11927 1.86637 1.62086 1.19538 1.64898 0.94863 0.80630 0.90290 0.75055 1.20850 0.94116 1.00142 1.00988 1.21127 0.96459 1.00252 0.92722 1.23917 0.96130 1.02279 0.96742 0.89931 0.91329 0.91240 0.90955 0.90981 0.88163 0.86133 0.82171 0.82678 0.91351 0.91037 0.91261 0.89767 0.90946 0.83312 0.85637 0.77381 1.17814 1.18039 0.83666 0.82993 0.86528 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.28 10.29 37.16 0.38 0.66 16 2 C 0.06 0.00 6.19 37.16 0.23 0.23 16 3 O -0.35 -0.44 10.22 -39.26 -0.40 -0.84 16 4 C 0.48 0.65 7.48 36.01 0.27 0.92 16 5 O -0.50 -2.03 15.65 -18.75 -0.29 -2.33 16 6 C -0.11 0.16 3.91 -90.95 -0.36 -0.19 16 7 H 0.14 -0.60 7.61 -51.93 -0.40 -1.00 16 8 C -0.12 0.20 6.89 -25.92 -0.18 0.02 16 9 C 0.10 -0.04 1.74 -89.81 -0.16 -0.20 16 10 F -0.18 -0.46 16.54 2.25 0.04 -0.42 16 11 C -0.68 1.57 5.05 37.16 0.19 1.75 16 12 S 2.59 6.65 4.92 -107.50 -0.53 6.12 16 13 O -0.92 -4.79 15.37 -68.54 -1.05 -5.84 16 14 O -0.92 -4.75 16.96 -67.03 -1.14 -5.89 16 15 O -0.65 -1.54 9.84 -54.22 -0.53 -2.08 16 16 C 0.03 0.04 4.80 -39.12 -0.19 -0.15 16 17 C 0.17 0.40 5.93 -39.12 -0.23 0.16 16 18 O -0.30 -1.04 9.36 -41.57 -0.39 -1.43 16 19 C 0.05 0.01 5.46 37.16 0.20 0.21 16 20 C -0.16 0.07 10.28 37.16 0.38 0.45 16 21 C -0.17 0.00 8.67 -39.46 -0.34 -0.34 16 22 C -0.06 0.09 5.35 -104.62 -0.56 -0.47 16 23 C -0.08 0.19 2.80 36.00 0.10 0.29 16 24 O -0.53 0.44 12.83 -35.23 -0.45 -0.01 16 25 Si 0.69 -2.15 29.88 -169.99 -5.08 -7.23 16 26 C -0.14 0.39 8.66 -39.57 -0.34 0.04 16 27 C -0.09 0.18 8.46 -39.46 -0.33 -0.16 16 28 C -0.15 0.07 7.05 -25.92 -0.18 -0.11 16 29 H 0.08 -0.25 8.14 -51.92 -0.42 -0.67 16 30 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 31 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.07 0.00 8.13 -51.93 -0.42 -0.42 16 33 H 0.07 -0.01 8.13 -51.93 -0.42 -0.44 16 34 H 0.10 -0.40 8.10 -51.93 -0.42 -0.82 16 35 H 0.12 -0.03 7.44 -51.93 -0.39 -0.42 16 36 H 0.16 -0.96 7.31 -51.92 -0.38 -1.34 16 37 H 0.16 -0.77 6.63 -51.93 -0.34 -1.12 16 38 H 0.07 -0.10 7.66 -51.93 -0.40 -0.50 16 39 H 0.07 -0.07 7.66 -51.93 -0.40 -0.46 16 40 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 41 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 42 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.15 -0.19 6.30 -52.48 -0.33 -0.52 16 44 H 0.13 -0.39 7.96 -51.93 -0.41 -0.80 16 45 H 0.38 -1.39 8.70 45.56 0.40 -0.99 16 46 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 47 H -0.26 0.43 7.00 56.52 0.40 0.82 16 48 H 0.15 -0.75 4.83 -52.49 -0.25 -1.00 16 49 H 0.15 -0.89 7.53 -52.49 -0.39 -1.29 16 50 H 0.12 -0.06 8.09 -51.93 -0.42 -0.48 16 51 H 0.11 -0.09 6.94 -51.93 -0.36 -0.45 16 LS Contribution 432.58 15.07 6.52 6.52 Total: 0.00 -12.95 432.58 -11.51 -24.46 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: -7.08 Total: -14.16 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.12 Total: 3.12 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -4.26 Total: -18.42 kcal Atomic # 9 Polarization: -0.46 SS G_CDS: 0.04 Total: -0.42 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: -5.08 Total: -7.23 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -0.53 Total: 6.12 kcal Total LS contribution 6.52 Total: 6.52 kcal Total: -12.95 -11.51 -24.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_15494190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.255 kcal (2) G-P(sol) polarization free energy of solvation -12.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds