Wall clock time and date at job start Tue Mar 9 2021 13:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47043 * 2 1 4 4 C 1.34229 * 117.00207 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99821 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99926 * 179.97438 * 4 3 2 7 7 H 1.08994 * 112.91064 * 48.75165 * 6 4 3 8 8 C 1.53787 * 113.61150 * 180.02562 * 6 4 3 9 9 C 1.53779 * 87.07963 * 139.98062 * 8 6 4 10 10 F 1.39904 * 113.61465 * 220.01404 * 9 8 6 11 11 C 1.53006 * 113.61477 * 89.11553 * 9 8 6 12 12 S 1.81402 * 109.46999 * 184.99794 * 11 9 8 13 13 O 1.42105 * 110.54127 * 291.62174 * 12 11 9 14 14 O 1.42098 * 110.54104 * 68.37391 * 12 11 9 15 15 O 1.52199 * 104.44588 * 180.02562 * 12 11 9 16 16 C 1.35995 * 114.00117 * 75.00176 * 15 12 11 17 17 C 1.39148 * 120.07598 * 90.00090 * 16 15 12 18 18 O 1.36001 * 120.07344 * 359.97438 * 17 16 15 19 19 C 1.42895 * 116.99879 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.46639 * 179.97438 * 19 18 17 21 21 C 1.38562 * 119.85583 * 180.02562 * 17 16 15 22 22 C 1.38245 * 120.00029 * 359.97438 * 21 17 16 23 23 C 1.50695 * 119.92565 * 180.02562 * 22 21 17 24 24 O 1.42900 * 109.47254 * 65.00183 * 23 22 21 25 25 Si 1.86303 * 109.46858 * 185.00005 * 23 22 21 26 26 C 1.38256 * 120.14390 * 359.97438 * 22 21 17 27 27 C 1.38246 * 120.14653 * 359.76852 * 26 22 21 28 28 C 1.53779 * 87.08402 * 334.56577 * 9 8 6 29 29 H 1.09008 * 109.46622 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47423 * 299.99782 * 1 2 3 31 31 H 1.08996 * 109.47324 * 60.00548 * 1 2 3 32 32 H 1.09000 * 109.46889 * 239.99436 * 2 1 3 33 33 H 1.09002 * 109.46652 * 119.99417 * 2 1 3 34 34 H 1.08997 * 113.61028 * 254.53022 * 8 6 4 35 35 H 1.09000 * 113.61529 * 25.43161 * 8 6 4 36 36 H 1.09001 * 109.46908 * 304.99796 * 11 9 8 37 37 H 1.08996 * 109.47034 * 64.99702 * 11 9 8 38 38 H 1.09001 * 109.47040 * 299.99403 * 19 18 17 39 39 H 1.08994 * 109.47337 * 60.00081 * 19 18 17 40 40 H 1.08994 * 109.47655 * 60.00219 * 20 19 18 41 41 H 1.09002 * 109.47148 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.46937 * 299.99491 * 20 19 18 43 43 H 1.08007 * 119.99952 * 180.02562 * 21 17 16 44 44 H 1.09000 * 109.47370 * 304.99482 * 23 22 21 45 45 H 0.96701 * 113.99894 * 59.99733 * 24 23 22 46 46 H 1.48496 * 109.99922 * 179.97438 * 25 23 22 47 47 H 1.48505 * 110.00122 * 301.31812 * 25 23 22 48 48 H 1.07999 * 119.92612 * 180.02562 * 26 22 21 49 49 H 1.07994 * 119.99879 * 180.24905 * 27 26 22 50 50 H 1.09002 * 113.61557 * 270.88569 * 28 9 8 51 51 H 1.09004 * 113.61501 * 139.97990 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.4707 3.5830 0.7542 8 6 5.4582 2.9682 0.0001 9 6 5.3564 4.1421 -0.9880 10 9 6.3095 4.0976 -2.0112 11 6 5.2762 5.5104 -0.3080 12 16 5.0119 6.7942 -1.5620 13 8 6.1652 6.9372 -2.3800 14 8 3.7175 6.6722 -2.1354 15 8 4.9512 8.0922 -0.7696 16 6 6.1615 8.5278 -0.3279 17 6 6.9273 9.3790 -1.1187 18 8 6.4674 9.7768 -2.3352 19 6 7.3073 10.6504 -3.0923 20 6 6.6278 10.9858 -4.4215 21 6 8.1600 9.8196 -0.6644 22 6 8.6263 9.4139 0.5722 23 6 9.9668 9.8946 1.0648 24 8 9.9234 11.3096 1.2594 25 14 10.3716 9.0579 2.6794 26 6 7.8649 8.5691 1.3583 27 6 6.6318 8.1301 0.9133 28 6 3.9863 3.5764 -1.3973 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8893 3.2436 0.9625 35 1 5.9128 2.0749 -0.4284 36 1 4.4466 5.5167 0.3989 37 1 6.2075 5.7074 0.2230 38 1 7.4782 11.5681 -2.5295 39 1 8.2612 10.1599 -3.2859 40 1 5.6738 11.4762 -4.2283 41 1 7.2686 11.6518 -4.9993 42 1 6.4572 10.0679 -4.9841 43 1 8.7561 10.4807 -1.2761 44 1 10.7329 9.6524 0.3281 45 1 9.2625 11.5979 1.9037 46 1 11.6916 9.5229 3.1755 47 1 9.3180 9.3542 3.6832 48 1 8.2324 8.2547 2.3239 49 1 6.0373 7.4734 1.5310 50 1 4.0385 2.8494 -2.2078 51 1 3.2292 4.3429 -1.5629 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79649_15494190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:22:01 Heat of formation + Delta-G solvation = -242.616690 kcal Electronic energy + Delta-G solvation = -40210.406271 eV Core-core repulsion = 34700.105034 eV Total energy + Delta-G solvation = -5510.301237 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.03559 -42.52307 -41.90786 -40.40533 -39.58722 -39.30358 -38.43129 -37.60559 -37.39732 -37.24134 -33.06805 -32.76724 -32.31079 -31.45208 -30.93211 -27.30171 -27.19033 -27.03139 -25.22821 -24.05682 -23.57020 -23.07908 -22.34866 -21.73862 -20.51142 -19.87458 -19.29493 -19.17254 -18.80227 -18.59267 -18.15455 -17.96452 -17.66530 -17.22138 -17.12251 -16.97545 -16.52873 -16.40697 -16.23462 -16.07021 -15.93616 -15.54774 -15.43528 -15.16612 -14.87177 -14.60872 -14.50751 -14.42889 -14.15580 -14.11245 -13.87979 -13.68413 -13.65938 -13.57838 -13.48629 -13.42295 -13.29535 -13.02954 -12.96520 -12.92429 -12.81163 -12.72749 -12.49041 -12.46409 -12.44355 -12.21180 -11.99226 -11.81874 -11.65517 -11.57646 -11.50456 -11.39835 -10.68900 -10.18408 -9.49497 -4.86317 -1.24577 -0.19576 0.09710 0.93000 0.99422 1.29808 1.56038 1.64844 1.94782 2.03366 2.22798 2.36082 2.65619 2.74345 2.90511 2.98072 3.17105 3.26789 3.32735 3.45858 3.51382 3.64715 3.75971 3.87013 3.91415 3.92939 3.97290 4.01836 4.03255 4.06569 4.09591 4.24186 4.28428 4.30628 4.32030 4.44063 4.49205 4.50289 4.60031 4.69301 4.75087 4.78633 4.80880 4.81493 4.83050 4.89531 4.93803 5.04210 5.12145 5.13146 5.15340 5.41063 5.44828 6.11057 6.47699 6.60258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.473 3.527 5 O -0.533 6.533 6 C -0.100 4.100 7 H 0.176 0.824 8 C -0.113 4.113 9 C 0.093 3.907 10 F -0.201 7.201 11 C -0.650 4.650 12 S 2.579 3.421 13 O -0.964 6.964 14 O -0.960 6.960 15 O -0.653 6.653 16 C -0.002 4.002 17 C 0.139 3.861 18 O -0.328 6.328 19 C 0.043 3.957 20 C -0.156 4.156 21 C -0.180 4.180 22 C -0.053 4.053 23 C -0.095 4.095 24 O -0.546 6.546 25 Si 0.779 3.221 26 C -0.135 4.135 27 C -0.076 4.076 28 C -0.166 4.166 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.101 0.899 36 H 0.208 0.792 37 H 0.192 0.808 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.151 0.849 44 H 0.129 0.871 45 H 0.389 0.611 46 H -0.308 1.308 47 H -0.263 1.263 48 H 0.178 0.822 49 H 0.199 0.801 50 H 0.104 0.896 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -0.419 7.911 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.317 3.683 5 O -0.423 6.423 6 C -0.119 4.119 7 H 0.194 0.806 8 C -0.151 4.151 9 C 0.073 3.927 10 F -0.181 7.181 11 C -0.779 4.779 12 S 2.677 3.323 13 O -0.963 6.963 14 O -0.958 6.958 15 O -0.612 6.612 16 C -0.045 4.045 17 C 0.090 3.910 18 O -0.242 6.242 19 C -0.031 4.031 20 C -0.213 4.213 21 C -0.198 4.198 22 C -0.055 4.055 23 C -0.202 4.202 24 O -0.354 6.354 25 Si 0.683 3.317 26 C -0.153 4.153 27 C -0.096 4.096 28 C -0.204 4.204 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.120 0.880 36 H 0.225 0.775 37 H 0.210 0.790 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.168 0.832 44 H 0.147 0.853 45 H 0.239 0.761 46 H -0.237 1.237 47 H -0.189 1.189 48 H 0.195 0.805 49 H 0.216 0.784 50 H 0.123 0.877 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.093 -0.259 7.507 7.590 hybrid contribution -0.421 0.669 -0.436 0.903 sum 0.672 0.410 7.071 7.114 Atomic orbital electron populations 1.21837 0.90802 1.04261 1.03770 1.23276 0.96874 0.79231 1.02630 1.86523 1.24114 1.33590 1.83298 1.23748 0.80666 0.92634 0.71268 1.90687 1.61110 1.44039 1.46439 1.22514 0.97552 0.90868 1.00938 0.80641 1.23603 0.93342 0.96515 1.01618 1.21808 0.88201 0.94833 0.87824 1.92966 1.66549 1.97388 1.61221 1.31202 1.18437 1.09070 1.19142 1.05870 0.73953 0.75833 0.76603 1.93631 1.52486 1.83233 1.66901 1.93596 1.41333 1.85439 1.75424 1.85744 1.39242 1.57834 1.78393 1.17895 0.82842 1.06561 0.97153 1.19445 0.93052 0.93247 0.85245 1.86150 1.47337 1.63470 1.27213 1.23189 0.94193 0.92791 0.92921 1.21863 1.02251 1.02704 0.94484 1.21236 0.94838 1.04740 0.99018 1.20528 0.96896 0.94963 0.93100 1.25493 0.95852 0.85587 1.13296 1.86611 1.62713 1.20503 1.65616 0.93938 0.76588 0.88686 0.72496 1.21238 0.93523 0.98845 1.01684 1.21670 0.96694 0.99838 0.91362 1.23999 0.96572 1.02355 0.97454 0.88581 0.90998 0.91490 0.91576 0.90909 0.84460 0.88021 0.77467 0.79035 0.89992 0.90538 0.91785 0.87597 0.92478 0.83168 0.85311 0.76134 1.23676 1.18865 0.80497 0.78418 0.87746 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.59 10.29 71.98 0.74 1.33 16 2 C 0.05 0.01 6.19 71.98 0.45 0.45 16 3 O -0.36 -0.79 10.22 -51.41 -0.53 -1.31 16 4 C 0.47 1.07 7.48 71.24 0.53 1.61 16 5 O -0.53 -4.51 15.65 21.98 0.34 -4.17 16 6 C -0.10 0.51 3.91 -11.01 -0.04 0.46 16 7 H 0.18 -2.35 7.61 -2.39 -0.02 -2.36 16 8 C -0.11 0.63 6.89 31.12 0.21 0.84 16 9 C 0.09 -0.19 1.74 -10.27 -0.02 -0.21 16 10 F -0.20 -1.18 16.54 44.97 0.74 -0.43 16 11 C -0.65 4.86 5.05 71.98 0.36 5.23 16 12 S 2.58 14.96 4.92 -56.49 -0.28 14.68 16 13 O -0.96 -12.18 15.37 -117.13 -1.80 -13.98 16 14 O -0.96 -11.83 16.96 -118.57 -2.01 -13.84 16 15 O -0.65 -3.35 9.84 -60.51 -0.60 -3.95 16 16 C 0.00 -0.01 4.80 22.57 0.11 0.10 16 17 C 0.14 0.81 5.93 22.57 0.13 0.95 16 18 O -0.33 -3.19 9.36 -72.70 -0.68 -3.87 16 19 C 0.04 0.11 5.46 71.98 0.39 0.51 16 20 C -0.16 -0.22 10.28 71.98 0.74 0.52 16 21 C -0.18 -0.11 8.67 22.35 0.19 0.08 16 22 C -0.05 0.23 5.35 -19.86 -0.11 0.12 16 23 C -0.09 0.53 2.80 71.23 0.20 0.73 16 24 O -0.55 1.11 12.83 -148.98 -1.91 -0.80 16 25 Si 0.78 -6.34 29.88 68.60 2.05 -4.29 16 26 C -0.14 1.15 8.66 22.28 0.19 1.34 16 27 C -0.08 0.55 8.46 22.35 0.19 0.74 16 28 C -0.17 0.19 7.05 31.12 0.22 0.41 16 29 H 0.10 -0.64 8.14 -2.38 -0.02 -0.66 16 30 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 33 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 34 H 0.14 -1.77 8.10 -2.39 -0.02 -1.79 16 35 H 0.10 -0.10 7.44 -2.39 -0.02 -0.12 16 36 H 0.21 -3.55 7.31 -2.39 -0.02 -3.57 16 37 H 0.19 -2.81 6.63 -2.39 -0.02 -2.83 16 38 H 0.08 -0.09 7.66 -2.39 -0.02 -0.11 16 39 H 0.08 0.04 7.66 -2.39 -0.02 0.03 16 40 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.15 -0.17 6.30 -2.91 -0.02 -0.18 16 44 H 0.13 -0.85 7.96 -2.39 -0.02 -0.87 16 45 H 0.39 -3.12 8.70 -74.06 -0.64 -3.76 16 46 H -0.31 -0.37 7.11 99.48 0.71 0.33 16 47 H -0.26 1.76 7.00 99.48 0.70 2.46 16 48 H 0.18 -2.67 4.83 -2.91 -0.01 -2.68 16 49 H 0.20 -3.45 7.53 -2.91 -0.02 -3.48 16 50 H 0.10 0.08 8.09 -2.39 -0.02 0.07 16 51 H 0.11 -0.16 6.94 -2.39 -0.02 -0.18 16 Total: 0.00 -37.31 432.58 0.21 -37.11 By element: Atomic # 1 Polarization: -20.71 SS G_CDS: 0.37 Total: -20.34 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 4.50 Total: 15.21 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -7.18 Total: -41.93 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.74 Total: -0.43 kcal Atomic # 14 Polarization: -6.34 SS G_CDS: 2.05 Total: -4.29 kcal Atomic # 16 Polarization: 14.96 SS G_CDS: -0.28 Total: 14.68 kcal Total: -37.31 0.21 -37.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_15494190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.512 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds