Wall clock time and date at job start Tue Mar 9 2021 13:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47213 * 2 1 4 4 C 1.35993 * 117.00192 * 180.02562 * 3 2 1 5 5 C 1.39151 * 120.07356 * 180.02562 * 4 3 2 6 6 O 1.35996 * 120.06938 * 359.96109 * 5 4 3 7 7 S 1.52205 * 114.00198 * 90.00085 * 6 5 4 8 8 O 1.42099 * 104.27436 * 191.06858 * 7 6 5 9 9 O 1.42100 * 104.27218 * 318.92366 * 7 6 5 10 10 C 1.81393 * 104.45035 * 74.99612 * 7 6 5 11 11 C 1.52996 * 109.47103 * 179.97438 * 10 7 6 12 12 H 1.09005 * 112.84763 * 43.80522 * 11 10 7 13 13 C 1.53781 * 113.61747 * 174.99841 * 11 10 7 14 14 C 1.53779 * 87.07822 * 89.11866 * 13 11 10 15 15 O 1.42900 * 113.61663 * 270.88119 * 14 13 11 16 16 C 1.42897 * 114.00218 * 294.71213 * 15 14 13 17 17 C 1.53003 * 113.61149 * 140.06772 * 14 13 11 18 18 F 1.39899 * 109.47157 * 54.78091 * 17 14 13 19 19 F 1.39906 * 109.47123 * 174.77831 * 17 14 13 20 20 F 1.39896 * 109.47256 * 294.77981 * 17 14 13 21 21 C 1.53774 * 87.08301 * 25.43656 * 14 13 11 22 22 C 1.38560 * 119.85593 * 179.97438 * 5 4 3 23 23 C 1.38247 * 119.99723 * 359.74522 * 22 5 4 24 24 C 1.38252 * 120.14421 * 0.51140 * 23 22 5 25 25 C 1.50697 * 119.92358 * 179.76468 * 24 23 22 26 26 O 1.42906 * 109.47006 * 119.72423 * 25 24 23 27 27 Si 1.86303 * 109.47384 * 359.72739 * 25 24 23 28 28 C 1.38242 * 120.14757 * 359.48646 * 24 23 22 29 29 H 1.08997 * 109.46748 * 299.99514 * 1 2 3 30 30 H 1.08993 * 109.47123 * 60.00083 * 1 2 3 31 31 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46895 * 239.99933 * 2 1 3 33 33 H 1.08999 * 109.47336 * 120.00589 * 2 1 3 34 34 H 1.08997 * 109.47370 * 299.99751 * 10 7 6 35 35 H 1.09006 * 109.47461 * 60.00341 * 10 7 6 36 36 H 1.09001 * 113.61900 * 203.66950 * 13 11 10 37 37 H 1.08998 * 113.61214 * 334.48735 * 13 11 10 38 38 H 1.09000 * 109.47330 * 176.89364 * 16 15 14 39 39 H 1.09006 * 109.46788 * 296.89545 * 16 15 14 40 40 H 1.09000 * 109.47376 * 56.89509 * 16 15 14 41 41 H 1.08999 * 113.61529 * 220.02252 * 21 14 13 42 42 H 1.08995 * 113.61586 * 89.11506 * 21 14 13 43 43 H 1.08002 * 120.00254 * 180.02562 * 22 5 4 44 44 H 1.07997 * 119.92640 * 180.25758 * 23 22 5 45 45 H 1.08998 * 109.47489 * 239.72514 * 25 24 23 46 46 H 0.96692 * 114.00434 * 299.99703 * 26 25 24 47 47 H 1.48493 * 110.00119 * 58.67719 * 27 25 24 48 48 H 1.48501 * 110.00099 * 180.02562 * 27 25 24 49 49 H 1.08002 * 120.00080 * 180.27072 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 3.8881 2.8107 0.0000 6 8 3.0623 3.8912 0.0002 7 16 2.6862 4.3827 1.3907 8 8 1.6400 5.3165 1.1612 9 8 2.4564 3.1927 2.1326 10 6 4.1746 5.2289 1.9897 11 6 3.9198 5.7750 3.3960 12 1 3.4050 5.0620 4.0400 13 6 5.1620 6.4068 4.0460 14 6 4.7312 7.7321 3.3957 15 8 5.2601 7.9237 2.0821 16 6 6.6823 8.0562 2.0417 17 6 4.9288 8.9509 4.2992 18 9 6.2593 9.0021 4.7287 19 9 4.6241 10.1149 3.5854 20 9 4.0839 8.8501 5.4097 21 6 3.2958 7.1805 3.4075 22 6 5.2624 2.9870 -0.0001 23 6 6.1003 1.8874 0.0047 24 6 5.5703 0.6106 -0.0011 25 6 6.4883 -0.5845 -0.0012 26 8 6.2443 -1.3727 1.1656 27 14 8.2596 -0.0070 -0.0011 28 6 4.2000 0.4277 -0.0010 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.0063 4.5249 2.0182 35 1 4.4189 6.0529 1.3192 36 1 5.1247 6.4225 5.1353 37 1 6.1034 6.0154 3.6604 38 1 7.0100 8.1430 1.0058 39 1 6.9798 8.9484 2.5929 40 1 7.1421 7.1784 2.4958 41 1 2.7306 7.4145 2.5054 42 1 2.7483 7.4077 4.3221 43 1 5.6790 3.9834 0.0008 44 1 7.1713 2.0262 0.0089 45 1 6.3022 -1.1856 -0.8912 46 1 6.3905 -0.9007 1.9968 47 1 8.5176 0.8400 1.1910 48 1 9.1750 -1.1763 -0.0018 49 1 3.7885 -0.5709 -0.0012 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79649_17541816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:22:39 Heat of formation + Delta-G solvation = -295.165988 kcal Electronic energy + Delta-G solvation = -42653.068560 eV Core-core repulsion = 36648.488996 eV Total energy + Delta-G solvation = -6004.579564 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.113 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -51.20303 -48.75155 -48.62997 -42.51896 -41.60891 -40.35930 -39.37573 -38.17182 -37.52473 -37.44180 -37.02931 -33.10296 -32.45115 -31.76172 -30.99927 -28.57664 -27.91146 -27.22541 -26.99261 -25.28870 -23.94622 -23.41142 -23.09330 -21.73320 -20.84796 -20.03420 -19.63903 -19.50893 -19.26086 -19.13092 -18.74371 -18.50068 -18.10943 -17.45094 -17.16713 -17.02305 -16.65067 -16.59272 -16.40142 -16.13452 -15.91850 -15.75221 -15.58931 -15.52654 -15.45893 -15.23332 -15.09599 -14.87816 -14.81330 -14.72300 -14.65971 -14.49571 -14.37805 -14.16588 -13.74871 -13.64021 -13.55264 -13.46102 -13.30903 -13.17659 -13.09311 -13.07176 -12.95736 -12.87790 -12.56425 -12.51368 -12.38273 -12.31167 -12.17311 -11.85125 -11.83695 -11.53826 -10.94831 -10.88226 -10.26760 -9.52927 -5.13147 -1.08380 -0.23383 -0.01470 1.03562 1.06824 1.41816 1.50028 1.80037 1.89639 1.91928 2.12848 2.44433 2.54579 2.56795 2.74934 2.86701 3.00721 3.10168 3.19593 3.25695 3.28739 3.41600 3.44783 3.52994 3.74414 3.77543 3.86901 3.90119 3.97297 3.99684 4.02190 4.11074 4.17781 4.21309 4.22111 4.26063 4.30260 4.35719 4.42783 4.53713 4.56278 4.63885 4.66612 4.68283 4.72531 4.81991 4.86029 5.00781 5.11642 5.29931 5.53810 6.10026 6.19357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 O -0.297 6.297 4 C 0.170 3.830 5 C 0.031 3.969 6 O -0.648 6.648 7 S 2.590 3.410 8 O -0.919 6.919 9 O -0.941 6.941 10 C -0.648 4.648 11 C -0.091 4.091 12 H 0.110 0.890 13 C -0.137 4.137 14 C 0.042 3.958 15 O -0.332 6.332 16 C 0.009 3.991 17 C 0.438 3.562 18 F -0.181 7.181 19 F -0.173 7.173 20 F -0.174 7.174 21 C -0.127 4.127 22 C -0.085 4.085 23 C -0.142 4.142 24 C -0.057 4.057 25 C -0.081 4.081 26 O -0.526 6.526 27 Si 0.689 3.311 28 C -0.171 4.171 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.155 0.845 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.153 0.847 44 H 0.145 0.855 45 H 0.126 0.874 46 H 0.379 0.621 47 H -0.256 1.256 48 H -0.253 1.253 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -3.273 -1.554 6.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 O -0.209 6.209 4 C 0.120 3.880 5 C -0.012 4.012 6 O -0.607 6.607 7 S 2.685 3.315 8 O -0.918 6.918 9 O -0.939 6.939 10 C -0.773 4.773 11 C -0.110 4.110 12 H 0.128 0.872 13 C -0.176 4.176 14 C 0.000 4.000 15 O -0.250 6.250 16 C -0.087 4.087 17 C 0.383 3.617 18 F -0.163 7.163 19 F -0.154 7.154 20 F -0.155 7.155 21 C -0.164 4.164 22 C -0.105 4.105 23 C -0.160 4.160 24 C -0.059 4.059 25 C -0.191 4.191 26 O -0.332 6.332 27 Si 0.589 3.411 28 C -0.190 4.190 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.173 0.827 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.144 0.856 43 H 0.170 0.830 44 H 0.162 0.838 45 H 0.143 0.857 46 H 0.227 0.773 47 H -0.181 1.181 48 H -0.178 1.178 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.025 -3.686 -1.930 6.524 hybrid contribution 0.412 0.466 1.506 1.629 sum 5.437 -3.220 -0.425 6.333 Atomic orbital electron populations 1.21817 0.91980 1.03374 1.04102 1.23013 0.96716 0.80720 1.01975 1.86199 1.17231 1.30747 1.86713 1.19007 0.84065 0.92230 0.92658 1.17311 0.87746 0.81064 1.15064 1.85770 1.68150 1.49673 1.57073 1.05778 0.76680 0.75448 0.73641 1.93653 1.50757 1.64919 1.82422 1.93656 1.84110 1.44058 1.72122 1.30912 1.23775 1.15523 1.07107 1.21692 0.98824 0.97230 0.93248 0.87230 1.23589 0.99425 0.92515 1.02022 1.23928 1.00606 0.90180 0.85331 1.88058 1.22556 1.92411 1.21930 1.23166 0.79688 1.01416 1.04440 1.21127 0.74029 0.86125 0.80432 1.93192 1.35475 1.96810 1.90790 1.93230 1.92753 1.51618 1.77776 1.93184 1.71155 1.96150 1.55034 1.23495 0.92441 0.93349 1.07108 1.21142 0.89703 1.01194 0.98433 1.20789 0.99894 0.90983 1.04322 1.20349 0.94170 0.95222 0.96137 1.25170 1.08399 0.93674 0.91817 1.86626 1.90368 1.40568 1.15650 0.94934 0.74218 0.82530 0.89411 1.21109 0.93007 0.98408 1.06463 0.91013 0.91216 0.89797 0.91365 0.91133 0.84168 0.82659 0.86886 0.88394 0.87839 0.92718 0.92577 0.87181 0.85647 0.82983 0.83776 0.85659 0.77334 1.18064 1.17821 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.09 10.28 37.16 0.38 0.47 16 2 C 0.05 0.00 5.46 37.16 0.20 0.21 16 3 O -0.30 -1.02 9.36 -41.55 -0.39 -1.40 16 4 C 0.17 0.37 5.93 -39.12 -0.23 0.14 16 5 C 0.03 0.05 4.81 -39.12 -0.19 -0.14 16 6 O -0.65 -1.76 9.84 -54.22 -0.53 -2.29 16 7 S 2.59 6.25 5.16 -107.50 -0.55 5.69 16 8 O -0.92 -5.24 18.09 -67.04 -1.21 -6.45 16 9 O -0.94 -4.11 15.81 -68.54 -1.08 -5.19 16 10 C -0.65 1.22 5.05 37.16 0.19 1.40 16 11 C -0.09 0.16 3.84 -89.81 -0.35 -0.18 16 12 H 0.11 -0.32 8.13 -51.93 -0.42 -0.74 16 13 C -0.14 0.37 6.51 -25.92 -0.17 0.20 16 14 C 0.04 -0.02 0.85 -89.81 -0.08 -0.10 16 15 O -0.33 0.12 8.35 -35.23 -0.29 -0.17 16 16 C 0.01 -0.02 10.33 101.05 1.04 1.02 16 17 C 0.44 0.42 2.51 37.16 0.09 0.52 16 18 F -0.18 -0.18 15.37 2.25 0.03 -0.15 16 19 F -0.17 -0.48 17.09 2.25 0.04 -0.44 16 20 F -0.17 -0.19 15.83 2.25 0.04 -0.16 16 21 C -0.13 0.10 6.89 -25.92 -0.18 -0.08 16 22 C -0.08 0.17 8.46 -39.46 -0.33 -0.16 16 23 C -0.14 0.41 8.66 -39.57 -0.34 0.06 16 24 C -0.06 0.10 5.39 -104.62 -0.56 -0.46 16 25 C -0.08 0.20 2.82 36.00 0.10 0.30 16 26 O -0.53 0.49 12.77 -35.23 -0.45 0.04 16 27 Si 0.69 -2.27 29.78 -169.99 -5.06 -7.33 16 28 C -0.17 0.02 8.60 -39.46 -0.34 -0.31 16 29 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 32 H 0.07 -0.12 7.66 -51.93 -0.40 -0.52 16 33 H 0.07 -0.06 7.66 -51.93 -0.40 -0.46 16 34 H 0.14 -0.64 6.60 -51.93 -0.34 -0.98 16 35 H 0.16 -0.40 6.12 -51.92 -0.32 -0.72 16 36 H 0.11 -0.40 8.06 -51.93 -0.42 -0.82 16 37 H 0.10 -0.40 6.65 -51.93 -0.35 -0.74 16 38 H 0.10 -0.41 8.14 -51.93 -0.42 -0.83 16 39 H 0.05 -0.08 6.60 -51.93 -0.34 -0.43 16 40 H 0.06 -0.23 6.60 -51.93 -0.34 -0.57 16 41 H 0.11 0.00 8.10 -51.93 -0.42 -0.42 16 42 H 0.13 -0.26 7.01 -51.93 -0.36 -0.62 16 43 H 0.15 -0.81 7.49 -52.49 -0.39 -1.20 16 44 H 0.15 -0.79 4.87 -52.49 -0.26 -1.04 16 45 H 0.13 -0.42 7.96 -51.93 -0.41 -0.84 16 46 H 0.38 -1.40 8.70 45.56 0.40 -1.00 16 47 H -0.26 0.46 7.10 56.52 0.40 0.86 16 48 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 49 H 0.15 -0.20 6.30 -52.49 -0.33 -0.53 16 LS Contribution 415.15 15.07 6.26 6.26 Total: 0.00 -11.50 415.15 -9.97 -21.47 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: -6.00 Total: -12.76 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.76 Total: 2.88 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -3.96 Total: -15.47 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 0.11 Total: -0.74 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: -5.06 Total: -7.33 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -0.55 Total: 5.69 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -11.50 -9.97 -21.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_17541816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -273.698 kcal (2) G-P(sol) polarization free energy of solvation -11.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -295.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds