Wall clock time and date at job start Tue Mar 9 2021 13:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.35987 * 117.00052 * 180.02562 * 3 2 1 5 5 C 1.39162 * 120.07135 * 179.73044 * 4 3 2 6 6 O 1.35990 * 120.07227 * 359.97438 * 5 4 3 7 7 S 1.52205 * 113.99767 * 90.00382 * 6 5 4 8 8 O 1.42101 * 104.27720 * 191.07199 * 7 6 5 9 9 O 1.42097 * 104.27529 * 318.93014 * 7 6 5 10 10 C 1.81405 * 104.44785 * 75.00099 * 7 6 5 11 11 H 1.08999 * 112.84464 * 311.19585 * 10 7 6 12 12 C 1.53781 * 113.61321 * 82.50396 * 10 7 6 13 13 C 1.53781 * 87.08126 * 89.11400 * 12 10 7 14 14 H 1.08998 * 113.61460 * 270.88416 * 13 12 10 15 15 C 1.50699 * 113.61209 * 139.97620 * 13 12 10 16 16 C 1.38228 * 120.00342 * 322.23311 * 15 13 12 17 17 C 1.38235 * 120.00279 * 179.74422 * 16 15 13 18 18 C 1.38236 * 119.99968 * 0.52500 * 17 16 15 19 19 C 1.38240 * 119.99586 * 359.75028 * 18 17 16 20 20 C 1.38234 * 119.99740 * 142.50534 * 15 13 12 21 21 C 1.53776 * 113.61049 * 180.02562 * 10 7 6 22 22 C 1.38561 * 119.85424 * 179.72560 * 5 4 3 23 23 C 1.38249 * 119.99799 * 0.54274 * 22 5 4 24 24 C 1.38254 * 120.14577 * 359.72491 * 23 22 5 25 25 C 1.50703 * 119.92496 * 180.02562 * 24 23 22 26 26 O 1.42900 * 109.47058 * 244.98372 * 25 24 23 27 27 Si 1.86298 * 109.47130 * 4.98301 * 25 24 23 28 28 C 1.38239 * 120.14407 * 0.02562 * 24 23 22 29 29 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 34 34 H 1.09003 * 113.61277 * 203.66291 * 12 10 7 35 35 H 1.09005 * 113.61298 * 334.56474 * 12 10 7 36 36 H 1.08008 * 119.99993 * 359.97438 * 16 15 13 37 37 H 1.08000 * 120.00315 * 180.29617 * 17 16 15 38 38 H 1.08000 * 120.00606 * 179.77201 * 18 17 16 39 39 H 1.07999 * 119.99725 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.00138 * 359.97438 * 20 15 13 41 41 H 1.09000 * 113.61775 * 25.43603 * 21 10 7 42 42 H 1.09008 * 113.61087 * 156.25339 * 21 10 7 43 43 H 1.08001 * 120.00332 * 180.27284 * 22 5 4 44 44 H 1.07996 * 119.92771 * 179.70622 * 23 22 5 45 45 H 1.08991 * 109.46916 * 124.98223 * 25 24 23 46 46 H 0.96694 * 113.99828 * 180.02562 * 26 25 24 47 47 H 1.48500 * 109.99978 * 178.68332 * 27 25 24 48 48 H 1.48506 * 110.00035 * 300.00006 * 27 25 24 49 49 H 1.08004 * 119.99688 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 3.8881 2.8107 -0.0062 6 8 3.0624 3.8913 -0.0118 7 16 2.6858 4.3897 1.3761 8 8 1.6396 5.3223 1.1416 9 8 2.4558 3.2035 2.1239 10 6 4.1742 5.2390 1.9713 11 1 5.0796 4.6459 1.8432 12 6 4.3045 6.6838 1.4612 13 6 3.5005 7.1107 2.7006 14 1 2.4221 7.1120 2.5424 15 6 4.0017 8.3814 3.3370 16 6 5.3591 8.6353 3.3978 17 6 5.8186 9.8035 3.9768 18 6 4.9211 10.7127 4.5048 19 6 3.5639 10.4561 4.4491 20 6 3.1042 9.2906 3.8650 21 6 4.0218 5.8333 3.3814 22 6 5.2624 2.9871 -0.0010 23 6 6.1004 1.8875 -0.0015 24 6 5.5703 0.6106 -0.0015 25 6 6.4884 -0.5845 -0.0014 26 8 6.3267 -1.3094 -1.2223 27 14 8.2543 -0.0110 0.1511 28 6 4.2000 0.4278 -0.0015 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 5.3295 7.0545 1.4567 35 1 3.7843 6.8632 0.5202 36 1 6.0606 7.9227 2.9895 37 1 6.8789 10.0041 4.0200 38 1 5.2802 11.6236 4.9605 39 1 2.8627 11.1662 4.8620 40 1 2.0438 9.0904 3.8211 41 1 3.2735 5.3262 3.9905 42 1 4.9696 5.9702 3.9022 43 1 5.6790 3.9835 -0.0010 44 1 7.1714 2.0262 -0.0022 45 1 6.2424 -1.2315 0.8405 46 1 6.8880 -2.0937 -1.2912 47 1 9.1674 -1.1817 0.1843 48 1 8.6020 0.8721 -0.9911 49 1 3.7885 -0.5708 -0.0010 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79649_17781816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:22:46 Heat of formation + Delta-G solvation = -79.860383 kcal Electronic energy + Delta-G solvation = -35018.757372 eV Core-core repulsion = 30393.191336 eV Total energy + Delta-G solvation = -4625.566036 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.127 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -42.43877 -41.15069 -40.27027 -39.23972 -38.91849 -38.06286 -37.49883 -36.99325 -33.08080 -32.43549 -32.16309 -31.78274 -30.94703 -27.27781 -27.00881 -26.96101 -25.21850 -23.84595 -23.43092 -23.11009 -22.76707 -21.59337 -20.94117 -19.34330 -18.99469 -18.79252 -18.56681 -18.30695 -18.02699 -17.39808 -17.08315 -16.65585 -16.47476 -16.29327 -16.03231 -15.85989 -15.49175 -15.34990 -15.04956 -14.82989 -14.60024 -14.38930 -14.24897 -14.17824 -14.05531 -13.83761 -13.78456 -13.66430 -13.56882 -13.26659 -13.20153 -13.12710 -13.04194 -12.97501 -12.83783 -12.57113 -12.43921 -12.25182 -11.97307 -11.87249 -11.84076 -11.77950 -11.50384 -11.31941 -10.73043 -10.17766 -9.81664 -9.59592 -9.44844 -5.12179 -0.99282 -0.14808 0.06940 0.41032 0.50440 1.07432 1.10208 1.44948 1.79796 1.95200 2.17286 2.61363 2.73380 2.85026 3.02844 3.05077 3.25980 3.41988 3.51698 3.54518 3.67822 3.70068 3.87347 3.91801 3.94130 3.96511 4.03373 4.07136 4.11064 4.16051 4.22740 4.24434 4.26941 4.34306 4.41850 4.47716 4.57278 4.59218 4.63055 4.68346 4.71428 4.75500 4.77901 4.85264 4.92390 5.05175 5.09307 5.11297 5.14770 5.16682 5.36746 5.56936 5.64087 5.71045 6.09637 6.16047 6.23956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 O -0.297 6.297 4 C 0.169 3.831 5 C 0.032 3.968 6 O -0.647 6.647 7 S 2.605 3.395 8 O -0.921 6.921 9 O -0.940 6.940 10 C -0.664 4.664 11 H 0.148 0.852 12 C -0.090 4.090 13 C -0.093 4.093 14 H 0.118 0.882 15 C -0.071 4.071 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.085 4.085 22 C -0.084 4.084 23 C -0.140 4.140 24 C -0.012 4.012 25 C -0.083 4.083 26 O -0.534 6.534 27 Si 0.687 3.313 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.084 0.916 46 H 0.384 0.616 47 H -0.258 1.258 48 H -0.250 1.250 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 -2.368 2.640 6.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 O -0.209 6.209 4 C 0.119 3.881 5 C -0.011 4.011 6 O -0.606 6.606 7 S 2.698 3.302 8 O -0.919 6.919 9 O -0.938 6.938 10 C -0.770 4.770 11 H 0.166 0.834 12 C -0.128 4.128 13 C -0.111 4.111 14 H 0.136 0.864 15 C -0.071 4.071 16 C -0.136 4.136 17 C -0.136 4.136 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.104 4.104 23 C -0.158 4.158 24 C -0.013 4.013 25 C -0.193 4.193 26 O -0.341 6.341 27 Si 0.588 3.412 28 C -0.188 4.188 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.171 0.829 44 H 0.163 0.837 45 H 0.102 0.898 46 H 0.232 0.768 47 H -0.183 1.183 48 H -0.175 1.175 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.874 -1.883 1.969 5.584 hybrid contribution 0.449 -0.920 -0.553 1.164 sum 5.322 -2.803 1.416 6.180 Atomic orbital electron populations 1.21817 0.92009 1.03334 1.04097 1.23006 0.96684 0.80820 1.01943 1.86192 1.17246 1.30671 1.86828 1.18968 0.84003 0.92205 0.92879 1.17284 0.87738 0.81010 1.15071 1.85746 1.68124 1.49614 1.57069 1.05364 0.76179 0.75122 0.73555 1.93634 1.50628 1.65124 1.82493 1.93649 1.84049 1.44089 1.72011 1.32649 1.23742 1.10588 1.10021 0.83398 1.22689 1.02859 0.88706 0.98500 1.21947 1.01603 0.92070 0.95491 0.86379 1.19525 0.93494 0.95242 0.98838 1.21001 0.94891 0.97584 1.00103 1.21161 0.99797 0.94274 0.98365 1.21221 0.93476 0.99554 0.99769 1.21207 0.95826 0.97227 0.99220 1.21144 0.99763 0.94037 0.98155 1.22647 1.03832 0.94489 0.91351 1.21123 0.89700 1.01106 0.98453 1.20767 1.00044 0.90853 1.04108 1.19247 0.93099 0.93497 0.95467 1.24892 1.09807 0.94842 0.89728 1.86584 1.66486 1.43519 1.37541 0.94967 0.73489 0.83502 0.89281 1.21073 0.92995 0.98323 1.06451 0.90990 0.89824 0.91247 0.91164 0.91385 0.87558 0.89464 0.85965 0.85954 0.86008 0.85857 0.85736 0.89998 0.87323 0.82888 0.83750 0.89798 0.76785 1.18258 1.17484 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.00 10.28 37.16 0.38 0.38 16 2 C 0.05 0.04 5.46 37.16 0.20 0.24 16 3 O -0.30 -1.32 9.37 -41.51 -0.39 -1.71 16 4 C 0.17 0.60 5.93 -39.12 -0.23 0.37 16 5 C 0.03 0.09 4.81 -39.12 -0.19 -0.09 16 6 O -0.65 -2.54 9.84 -54.20 -0.53 -3.08 16 7 S 2.60 9.22 5.00 -107.50 -0.54 8.68 16 8 O -0.92 -5.75 16.42 -67.04 -1.10 -6.86 16 9 O -0.94 -5.22 15.82 -68.54 -1.08 -6.30 16 10 C -0.66 0.49 4.18 -25.92 -0.11 0.38 16 11 H 0.15 -0.52 6.08 -51.93 -0.32 -0.83 16 12 C -0.09 0.08 6.87 -25.92 -0.18 -0.10 16 13 C -0.09 -0.04 3.59 -90.93 -0.33 -0.37 16 14 H 0.12 0.15 6.97 -51.93 -0.36 -0.21 16 15 C -0.07 -0.06 5.29 -104.63 -0.55 -0.62 16 16 C -0.12 -0.01 8.60 -39.59 -0.34 -0.35 16 17 C -0.12 -0.02 10.05 -39.58 -0.40 -0.42 16 18 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 19 C -0.12 -0.10 10.05 -39.58 -0.40 -0.49 16 20 C -0.11 -0.14 9.71 -39.58 -0.38 -0.52 16 21 C -0.08 0.07 7.15 -25.89 -0.19 -0.12 16 22 C -0.08 0.03 8.50 -39.46 -0.34 -0.31 16 23 C -0.14 0.13 8.66 -39.57 -0.34 -0.21 16 24 C -0.01 0.00 5.38 -104.61 -0.56 -0.57 16 25 C -0.08 0.14 2.79 36.01 0.10 0.24 16 26 O -0.53 0.25 12.81 -35.23 -0.45 -0.20 16 27 Si 0.69 -1.83 29.84 -169.99 -5.07 -6.90 16 28 C -0.17 -0.23 8.67 -39.46 -0.34 -0.57 16 29 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 31 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.07 -0.04 7.66 -51.93 -0.40 -0.44 16 33 H 0.07 -0.04 7.66 -51.93 -0.40 -0.44 16 34 H 0.11 -0.30 6.32 -51.93 -0.33 -0.62 16 35 H 0.09 -0.06 8.09 -51.93 -0.42 -0.48 16 36 H 0.12 -0.25 6.68 -52.48 -0.35 -0.60 16 37 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 38 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 39 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 40 H 0.12 0.01 8.06 -52.49 -0.42 -0.41 16 41 H 0.08 -0.08 8.10 -51.93 -0.42 -0.50 16 42 H 0.11 -0.25 7.72 -51.92 -0.40 -0.65 16 43 H 0.15 -0.58 7.22 -52.49 -0.38 -0.96 16 44 H 0.15 -0.50 4.85 -52.49 -0.25 -0.76 16 45 H 0.08 -0.30 7.96 -51.93 -0.41 -0.71 16 46 H 0.38 -1.70 8.74 45.56 0.40 -1.30 16 47 H -0.26 0.13 7.11 56.52 0.40 0.53 16 48 H -0.25 -0.04 7.05 56.52 0.40 0.36 16 49 H 0.15 -0.05 6.30 -52.48 -0.33 -0.38 16 LS Contribution 406.29 15.07 6.12 6.12 Total: 0.00 -11.12 406.29 -14.17 -25.29 By element: Atomic # 1 Polarization: -4.93 SS G_CDS: -6.53 Total: -11.46 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -4.59 Total: -3.57 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -3.56 Total: -18.15 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -5.07 Total: -6.90 kcal Atomic # 16 Polarization: 9.22 SS G_CDS: -0.54 Total: 8.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -11.12 -14.17 -25.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_17781816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.570 kcal (2) G-P(sol) polarization free energy of solvation -11.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds