Wall clock time and date at job start Tue Mar 9 2021 13:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35987 * 117.00096 * 2 1 4 4 C 1.38525 * 120.07678 * 359.72668 * 3 2 1 5 5 C 1.38280 * 120.00242 * 179.74262 * 4 3 2 6 6 C 1.38209 * 120.14497 * 0.51192 * 5 4 3 7 7 C 1.50703 * 119.92798 * 179.74328 * 6 5 4 8 8 O 1.42905 * 109.47020 * 120.01975 * 7 6 5 9 9 Si 1.86296 * 109.47001 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47466 * 59.99784 * 9 7 6 11 11 H 1.48502 * 109.47359 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47282 * 299.99796 * 9 7 6 13 13 C 1.38285 * 120.14837 * 359.76168 * 6 5 4 14 14 C 1.38528 * 119.99975 * 359.97438 * 13 6 5 15 15 O 1.35988 * 120.07591 * 179.97438 * 14 13 6 16 16 S 1.52204 * 113.99479 * 270.01860 * 15 14 13 17 17 O 1.42102 * 104.27531 * 191.07161 * 16 15 14 18 18 O 1.42102 * 104.27891 * 318.92618 * 16 15 14 19 19 C 1.81403 * 104.45225 * 74.99942 * 16 15 14 20 20 C 1.52999 * 109.47122 * 179.97438 * 19 16 15 21 21 C 1.52995 * 109.46882 * 179.97438 * 20 19 16 22 22 Si 1.86296 * 109.47298 * 180.02562 * 21 20 19 23 23 C 1.86293 * 109.47420 * 59.99734 * 22 21 20 24 24 C 1.86298 * 109.47568 * 180.02562 * 22 21 20 25 25 C 1.86309 * 109.46832 * 299.99978 * 22 21 20 26 26 H 1.09001 * 109.47103 * 300.00410 * 1 2 3 27 27 H 1.09004 * 109.47054 * 59.99914 * 1 2 3 28 28 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99342 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.92837 * 180.22720 * 5 4 3 31 31 H 1.09002 * 109.47248 * 240.02291 * 7 6 5 32 32 H 0.96701 * 113.99950 * 300.00085 * 8 7 6 33 33 H 1.08002 * 120.00182 * 179.97438 * 13 6 5 34 34 H 1.09004 * 109.46796 * 299.99990 * 19 16 15 35 35 H 1.09009 * 109.46632 * 59.99539 * 19 16 15 36 36 H 1.09000 * 109.47114 * 299.99676 * 20 19 16 37 37 H 1.09001 * 109.46988 * 60.00024 * 20 19 16 38 38 H 1.09000 * 109.47381 * 300.00424 * 21 20 19 39 39 H 1.09001 * 109.47287 * 60.00210 * 21 20 19 40 40 H 1.09000 * 109.47317 * 60.00324 * 23 22 21 41 41 H 1.08999 * 109.47395 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.47368 * 300.00363 * 23 22 21 43 43 H 1.09001 * 109.47454 * 59.99581 * 24 22 21 44 44 H 1.09001 * 109.47586 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.46481 * 299.99793 * 24 22 21 46 46 H 1.08997 * 109.47147 * 59.99528 * 25 22 21 47 47 H 1.08999 * 109.47190 * 179.97438 * 25 22 21 48 48 H 1.09001 * 109.47080 * 299.99738 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2936 2.3744 -0.0057 5 6 1.9229 3.6057 -0.0003 6 6 3.3030 3.6797 0.0001 7 6 3.9839 5.0242 0.0001 8 8 4.8000 5.1448 1.1669 9 14 2.6974 6.3717 0.0003 10 1 1.8493 6.2463 1.2128 11 1 3.3682 7.6966 -0.0003 12 1 1.8491 6.2464 -1.2121 13 6 4.0606 2.5229 0.0001 14 6 3.4364 1.2862 0.0002 15 8 4.1799 0.1475 -0.0003 16 16 4.5180 -0.3702 -1.3911 17 8 5.0496 -1.6681 -1.1621 18 8 3.3197 -0.1899 -2.1331 19 6 5.8122 0.7513 -1.9895 20 6 6.2421 0.3296 -3.3960 21 6 7.3332 1.2759 -3.9009 22 14 7.8562 0.7630 -5.6137 23 6 6.3895 0.8386 -6.7598 24 6 9.1853 1.9148 -6.2283 25 6 8.5177 -0.9781 -5.5658 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2150 2.3192 -0.0106 30 1 1.3348 4.5115 -0.0011 31 1 4.6064 5.1163 -0.8899 32 1 4.3111 5.0725 1.9981 33 1 5.1389 2.5835 0.0000 34 1 5.4256 1.7701 -2.0174 35 1 6.6703 0.7065 -1.3187 36 1 6.6289 -0.6891 -3.3675 37 1 5.3842 0.3740 -4.0668 38 1 6.9461 2.2945 -3.9293 39 1 8.1913 1.2319 -3.2301 40 1 6.0025 1.8572 -6.7879 41 1 6.6954 0.5381 -7.7619 42 1 5.6121 0.1644 -6.4001 43 1 10.0435 1.8701 -5.5577 44 1 9.4910 1.6149 -7.2307 45 1 8.7986 2.9335 -6.2563 46 1 7.7404 -1.6522 -5.2060 47 1 8.8233 -1.2784 -6.5680 48 1 9.3759 -1.0223 -4.8953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79710_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:06 Heat of formation + Delta-G solvation = -193.327258 kcal Electronic energy + Delta-G solvation = -29673.801634 eV Core-core repulsion = 25559.776904 eV Total energy + Delta-G solvation = -4114.024730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.50532 -40.26689 -39.28377 -38.39113 -37.29224 -37.07587 -35.85006 -32.01563 -31.90342 -29.60884 -28.77660 -28.34029 -28.30180 -28.17444 -26.26975 -24.90403 -23.04277 -22.80906 -21.34567 -19.72484 -19.22123 -18.81254 -18.62344 -18.03345 -17.29153 -16.84651 -16.70042 -16.16801 -16.04307 -15.96749 -15.55113 -15.36980 -14.94623 -14.75666 -14.29883 -14.19960 -14.12865 -14.01300 -13.95934 -13.57592 -13.53788 -13.51620 -13.40012 -13.34642 -13.26059 -13.14968 -13.10015 -13.03811 -12.97061 -12.92792 -12.47411 -12.22343 -12.16202 -12.03346 -11.81720 -11.80658 -11.61421 -10.70135 -10.67629 -10.44867 -10.43733 -10.24718 -9.43346 -1.09917 -0.12619 0.00060 0.97298 1.22380 1.52311 1.56765 1.92445 1.98429 2.01731 2.03363 2.05708 2.23430 2.54321 2.74813 2.88811 3.41814 3.45026 3.52609 3.65259 3.69839 3.74298 3.94256 3.98239 4.17856 4.22298 4.31728 4.32163 4.43690 4.60162 4.62830 4.64671 4.75071 4.77602 4.81268 4.82018 4.84563 4.87162 4.88712 4.89041 4.89245 4.92865 5.09333 5.10945 5.40153 5.47036 5.60915 5.67091 5.68113 6.10740 6.73826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.332 6.332 3 C 0.140 3.860 4 C -0.189 4.189 5 C -0.062 4.062 6 C -0.140 4.140 7 C -0.074 4.074 8 O -0.550 6.550 9 Si 0.973 3.027 10 H -0.247 1.247 11 H -0.276 1.276 12 H -0.249 1.249 13 C -0.063 4.063 14 C 0.001 3.999 15 O -0.662 6.662 16 S 2.572 3.428 17 O -0.977 6.977 18 O -0.972 6.972 19 C -0.626 4.626 20 C -0.119 4.119 21 C -0.410 4.410 22 Si 1.068 2.932 23 C -0.472 4.472 24 C -0.461 4.461 25 C -0.476 4.476 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.172 0.828 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.391 0.609 33 H 0.174 0.826 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 7.785 -0.279 7.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.245 6.245 3 C 0.091 3.909 4 C -0.207 4.207 5 C -0.080 4.080 6 C -0.141 4.141 7 C -0.185 4.185 8 O -0.358 6.358 9 Si 0.797 3.203 10 H -0.171 1.171 11 H -0.201 1.201 12 H -0.173 1.173 13 C -0.083 4.083 14 C -0.042 4.042 15 O -0.621 6.621 16 S 2.673 3.327 17 O -0.975 6.975 18 O -0.971 6.971 19 C -0.757 4.757 20 C -0.158 4.158 21 C -0.496 4.496 22 Si 1.261 2.739 23 C -0.578 4.578 24 C -0.568 4.568 25 C -0.582 4.582 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.189 0.811 30 H 0.174 0.826 31 H 0.156 0.844 32 H 0.240 0.760 33 H 0.191 0.809 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.215 7.578 -0.482 7.910 hybrid contribution 0.120 -0.687 0.309 0.763 sum -2.095 6.891 -0.172 7.204 Atomic orbital electron populations 1.23539 0.75343 1.06097 1.03320 1.86150 1.24558 1.26506 1.87263 1.19482 0.90972 0.86568 0.93841 1.21485 1.02150 0.90268 1.06822 1.21384 0.94178 0.98213 0.94213 1.20302 0.93431 0.95969 1.04398 1.25038 1.03230 0.97386 0.92811 1.86506 1.37754 1.95323 1.16170 0.85348 0.76616 0.76582 0.81768 1.17087 1.20098 1.17280 1.21288 1.02647 0.88093 0.96231 1.17775 0.86735 0.82820 1.16833 1.85713 1.72220 1.46995 1.57206 1.06075 0.76958 0.76305 0.73326 1.93573 1.81961 1.38590 1.83349 1.93591 1.44430 1.86643 1.72403 1.30795 1.18155 1.17221 1.09484 1.21210 1.01493 1.01547 0.91564 1.26234 1.01657 1.03525 1.18145 0.78306 0.65372 0.65052 0.65213 1.26408 1.15540 1.04676 1.11169 1.26249 1.13220 1.11174 1.06151 1.26465 1.06769 1.20566 1.04352 0.90007 0.90661 0.86869 0.81094 0.82587 0.84405 0.76000 0.80896 0.82046 0.81850 0.90021 0.89491 0.88470 0.88898 0.90782 0.91542 0.91564 0.91112 0.91638 0.90885 0.91648 0.91528 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.33 -2.86 9.73 -72.57 -0.71 -3.57 16 3 C 0.14 0.82 5.93 22.57 0.13 0.95 16 4 C -0.19 0.27 9.04 22.35 0.20 0.48 16 5 C -0.06 0.27 8.66 22.27 0.19 0.47 16 6 C -0.14 0.59 5.39 -19.86 -0.11 0.48 16 7 C -0.07 0.53 2.82 71.24 0.20 0.74 16 8 O -0.55 2.93 12.77 -148.98 -1.90 1.03 16 9 Si 0.97 -6.63 25.06 68.60 1.72 -4.91 16 10 H -0.25 1.73 7.11 99.48 0.71 2.44 16 11 H -0.28 0.63 7.11 99.48 0.71 1.34 16 12 H -0.25 1.60 7.11 99.48 0.71 2.31 16 13 C -0.06 0.09 8.02 22.35 0.18 0.27 16 14 C 0.00 0.00 4.81 22.57 0.11 0.11 16 15 O -0.66 -6.00 9.84 -60.43 -0.59 -6.59 16 16 S 2.57 21.91 5.17 -56.49 -0.29 21.61 16 17 O -0.98 -16.16 18.09 -118.57 -2.15 -18.31 16 18 O -0.97 -12.32 15.82 -117.14 -1.85 -14.18 16 19 C -0.63 1.59 5.46 71.98 0.39 1.99 16 20 C -0.12 0.29 4.59 30.59 0.14 0.43 16 21 C -0.41 2.61 4.45 71.98 0.32 2.93 16 22 Si 1.07 -6.51 12.19 68.60 0.84 -5.68 16 23 C -0.47 1.37 8.65 113.37 0.98 2.35 16 24 C -0.46 1.98 8.65 113.37 0.98 2.96 16 25 C -0.48 0.93 8.65 113.37 0.98 1.91 16 26 H 0.08 -0.50 7.68 -2.39 -0.02 -0.52 16 27 H 0.07 -0.31 7.65 -2.38 -0.02 -0.33 16 28 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.17 -1.23 6.30 -2.91 -0.02 -1.25 16 30 H 0.16 -1.44 4.87 -2.91 -0.01 -1.45 16 31 H 0.14 -1.42 7.96 -2.39 -0.02 -1.44 16 32 H 0.39 -4.33 8.70 -74.06 -0.64 -4.98 16 33 H 0.17 -1.13 7.49 -2.91 -0.02 -1.15 16 34 H 0.16 -1.26 6.60 -2.39 -0.02 -1.27 16 35 H 0.16 -1.16 8.14 -2.39 -0.02 -1.18 16 36 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 37 H 0.09 -0.30 7.79 -2.39 -0.02 -0.32 16 38 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 39 H 0.09 -0.74 7.96 -2.39 -0.02 -0.75 16 40 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 41 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 42 H 0.07 -0.13 7.79 -2.38 -0.02 -0.15 16 43 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 44 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 45 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 46 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 47 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 48 H 0.07 -0.16 7.96 -2.39 -0.02 -0.17 16 Total: 0.00 -27.32 401.29 1.95 -25.37 By element: Atomic # 1 Polarization: -13.01 SS G_CDS: 1.07 Total: -11.95 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 5.82 Total: 17.16 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -7.20 Total: -41.61 kcal Atomic # 14 Polarization: -13.14 SS G_CDS: 2.56 Total: -10.58 kcal Atomic # 16 Polarization: 21.91 SS G_CDS: -0.29 Total: 21.61 kcal Total: -27.32 1.95 -25.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.959 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds