Wall clock time and date at job start Tue Mar 9 2021 13:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45208 * 109.47223 * 2 1 4 4 C 1.34222 * 117.00248 * 180.02562 * 3 2 1 5 5 O 1.20835 * 119.99916 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00299 * 180.02562 * 4 3 2 7 7 H 1.09004 * 112.84661 * 311.19216 * 6 4 3 8 8 C 1.54053 * 113.69953 * 82.46227 * 6 4 3 9 9 C 1.53774 * 86.98683 * 139.99143 * 8 6 4 10 10 F 1.39904 * 113.61534 * 219.98195 * 9 8 6 11 11 C 1.53007 * 113.61442 * 89.16491 * 9 8 6 12 12 S 1.81393 * 109.47120 * 80.86344 * 11 9 8 13 13 O 1.42097 * 110.54671 * 68.37860 * 12 11 9 14 14 O 1.42104 * 110.54122 * 291.62283 * 12 11 9 15 15 O 1.52202 * 104.44798 * 179.97438 * 12 11 9 16 16 C 1.36005 * 113.99834 * 75.00017 * 15 12 11 17 17 C 1.39152 * 120.07399 * 90.00064 * 16 15 12 18 18 O 1.35995 * 120.07168 * 359.97438 * 17 16 15 19 19 C 1.42905 * 116.99762 * 179.72534 * 18 17 16 20 20 C 1.38564 * 119.85416 * 179.72292 * 17 16 15 21 21 C 1.38240 * 119.99685 * 0.27898 * 20 17 16 22 22 C 1.38253 * 120.14890 * 359.97438 * 21 20 17 23 23 C 1.50704 * 119.92805 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.46811 * 120.00047 * 23 22 21 25 25 Si 1.86303 * 109.46925 * 0.02562 * 23 22 21 26 26 C 1.38239 * 120.14499 * 0.02562 * 22 21 20 27 27 C 1.53774 * 87.17604 * 334.57265 * 9 8 6 28 28 H 1.09002 * 109.47187 * 60.00050 * 1 2 3 29 29 H 1.08995 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47155 * 300.00312 * 1 2 3 31 31 H 1.08993 * 109.47077 * 240.00321 * 2 1 3 32 32 H 1.08994 * 109.47089 * 119.99280 * 2 1 3 33 33 H 1.08998 * 113.61186 * 25.48288 * 8 6 4 34 34 H 1.08999 * 113.69553 * 254.51141 * 8 6 4 35 35 H 1.09000 * 109.46700 * 320.86166 * 11 9 8 36 36 H 1.09002 * 109.46739 * 200.86472 * 11 9 8 37 37 H 1.09000 * 109.47187 * 300.00191 * 19 18 17 38 38 H 1.09001 * 109.46558 * 60.00239 * 19 18 17 39 39 H 1.09001 * 109.47103 * 179.97438 * 19 18 17 40 40 H 1.07997 * 120.00185 * 180.29621 * 20 17 16 41 41 H 1.07998 * 119.92511 * 180.02562 * 21 20 17 42 42 H 1.08993 * 109.47346 * 240.00057 * 23 22 21 43 43 H 0.96706 * 113.99715 * 180.02562 * 24 23 22 44 44 H 1.48492 * 109.99889 * 298.67883 * 25 23 22 45 45 H 1.48506 * 109.99814 * 59.99833 * 25 23 22 46 46 H 1.07999 * 120.00042 * 179.97438 * 26 22 21 47 47 H 1.09004 * 113.61990 * 140.01921 * 27 9 8 48 48 H 1.09006 * 113.61933 * 270.92930 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4708 3.5818 -0.7553 8 6 3.9871 3.5795 1.3988 9 6 5.3568 4.1434 0.9859 10 9 6.3114 4.1012 2.0078 11 6 5.2764 5.5108 0.3041 12 16 5.1155 6.8061 1.5638 13 8 6.3149 6.9209 2.3170 14 8 3.8514 6.7213 2.2074 15 8 5.0466 8.1023 0.7690 16 6 3.8522 8.3104 0.1527 17 6 2.8364 8.9945 0.8134 18 8 3.0357 9.4560 2.0771 19 6 1.9508 10.1546 2.6912 20 6 1.6233 9.2090 0.1791 21 6 1.4223 8.7387 -1.1052 22 6 2.4296 8.0544 -1.7597 23 6 2.2053 7.5443 -3.1599 24 8 3.1619 8.1360 -4.0413 25 14 0.4858 7.9958 -3.7172 26 6 3.6422 7.8370 -1.1325 27 6 5.4582 2.9682 -0.0006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.0403 2.8537 2.2102 34 1 3.2310 4.3469 1.5649 35 1 4.4100 5.5369 -0.3567 36 1 6.1824 5.6804 -0.2778 37 1 1.6997 11.0320 2.0951 38 1 1.0837 9.4970 2.7528 39 1 2.2413 10.4673 3.6941 40 1 0.8350 9.7439 0.6879 41 1 0.4765 8.9069 -1.5987 42 1 2.3195 6.4605 -3.1745 43 1 3.0764 7.8527 -4.9620 44 1 -0.5194 7.3609 -2.8276 45 1 0.3180 9.4712 -3.7019 46 1 4.4274 7.3018 -1.6458 47 1 5.8891 3.2423 -0.9636 48 1 5.9129 2.0755 0.4289 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79710_15494190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:33:32 Heat of formation + Delta-G solvation = -231.686099 kcal Electronic energy + Delta-G solvation = -38837.702560 eV Core-core repulsion = 33483.412929 eV Total energy + Delta-G solvation = -5354.289632 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -49.00678 -42.58569 -41.89123 -40.30934 -39.65290 -39.33107 -38.23410 -37.53052 -37.38876 -37.10327 -32.86521 -32.34498 -32.13967 -31.54530 -28.89276 -27.43639 -27.19065 -26.43037 -24.98385 -24.10550 -23.10814 -22.41216 -21.55568 -20.51620 -19.76415 -19.48041 -19.18510 -18.78389 -18.55723 -18.47882 -18.03398 -17.74396 -17.43315 -17.06530 -16.80030 -16.75189 -16.59182 -16.22704 -15.97504 -15.84639 -15.65207 -15.44814 -15.35338 -14.90962 -14.55683 -14.46272 -14.28584 -14.16762 -14.10030 -13.95117 -13.83427 -13.77473 -13.45098 -13.20765 -13.17770 -13.10607 -13.05821 -12.95869 -12.84900 -12.64007 -12.59883 -12.55397 -12.44707 -12.29554 -12.11208 -12.04398 -11.59873 -11.52217 -11.45926 -10.60251 -10.43449 -9.53174 -5.16811 -1.19981 -0.27363 -0.14647 0.91005 1.02212 1.07589 1.44659 1.48633 1.75455 1.89213 2.04503 2.34369 2.53447 2.71134 2.80662 2.86000 3.02752 3.05254 3.21065 3.30857 3.34636 3.45450 3.60284 3.72664 3.74372 3.81132 3.87222 3.89157 3.92794 4.01431 4.05395 4.08245 4.09399 4.16379 4.22807 4.29172 4.36720 4.42950 4.44914 4.53538 4.55464 4.59994 4.66148 4.74048 4.74743 4.89198 4.93890 4.95597 5.18514 5.36318 5.98153 6.39601 6.62792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.354 6.354 4 C 0.475 3.525 5 O -0.499 6.499 6 C -0.108 4.108 7 H 0.134 0.866 8 C -0.148 4.148 9 C 0.104 3.896 10 F -0.179 7.179 11 C -0.675 4.675 12 S 2.594 3.406 13 O -0.905 6.905 14 O -0.933 6.933 15 O -0.645 6.645 16 C 0.028 3.972 17 C 0.172 3.828 18 O -0.296 6.296 19 C 0.021 3.979 20 C -0.187 4.187 21 C -0.060 4.060 22 C -0.098 4.098 23 C -0.069 4.069 24 O -0.545 6.545 25 Si 0.683 3.317 26 C -0.064 4.064 27 C -0.121 4.121 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.151 0.849 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.386 0.614 44 H -0.250 1.250 45 H -0.247 1.247 46 H 0.154 0.846 47 H 0.100 0.900 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -0.305 -7.319 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.317 3.683 5 O -0.386 6.386 6 C -0.127 4.127 7 H 0.152 0.848 8 C -0.186 4.186 9 C 0.084 3.916 10 F -0.159 7.159 11 C -0.799 4.799 12 S 2.686 3.314 13 O -0.903 6.903 14 O -0.931 6.931 15 O -0.603 6.603 16 C -0.015 4.015 17 C 0.122 3.878 18 O -0.207 6.207 19 C -0.074 4.074 20 C -0.205 4.205 21 C -0.078 4.078 22 C -0.099 4.099 23 C -0.180 4.180 24 O -0.352 6.352 25 Si 0.584 3.416 26 C -0.084 4.084 27 C -0.159 4.159 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.169 0.831 41 H 0.151 0.849 42 H 0.098 0.902 43 H 0.234 0.766 44 H -0.175 1.175 45 H -0.172 1.172 46 H 0.171 0.829 47 H 0.118 0.882 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.998 0.471 -5.747 9.860 hybrid contribution 0.494 -0.562 -0.083 0.753 sum -7.504 -0.091 -5.830 9.503 Atomic orbital electron populations 1.21827 0.92201 1.03352 1.03715 1.23129 0.95699 0.79582 1.02905 1.86506 1.23980 1.33011 1.83595 1.23123 0.80905 0.91750 0.72487 1.90710 1.60519 1.42652 1.44729 1.22326 0.97298 0.92194 1.00882 0.84798 1.23912 0.96000 1.02085 0.96597 1.21508 0.88879 0.93400 0.87766 1.93010 1.65677 1.97211 1.60019 1.31339 1.14184 1.13554 1.20774 1.05767 0.75379 0.74749 0.75502 1.93684 1.47841 1.83338 1.65448 1.93653 1.42891 1.84354 1.72200 1.85808 1.41309 1.60465 1.72762 1.17267 0.81179 1.09591 0.93449 1.19037 0.92287 0.91573 0.84906 1.86210 1.41172 1.68785 1.24554 1.23305 0.89347 0.95760 0.98975 1.21172 0.96847 1.05957 0.96547 1.20926 0.98427 0.94255 0.94221 1.19065 0.93737 1.01874 0.95200 1.24617 1.04977 0.99728 0.88677 1.86501 1.56042 1.70695 1.21916 0.95011 0.74497 0.82095 0.90034 1.21012 0.97919 0.98694 0.90760 1.23613 0.93459 0.98148 1.00683 0.91325 0.89917 0.91301 0.90945 0.90963 0.86557 0.87012 0.82805 0.82219 0.91915 0.91622 0.87143 0.83115 0.84879 0.90214 0.76609 1.17495 1.17178 0.82892 0.88165 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.35 10.29 37.16 0.38 0.73 16 2 C 0.06 -0.02 6.19 37.16 0.23 0.21 16 3 O -0.35 -0.29 10.22 -39.24 -0.40 -0.69 16 4 C 0.48 0.58 7.49 36.00 0.27 0.85 16 5 O -0.50 -2.03 15.65 -18.76 -0.29 -2.32 16 6 C -0.11 0.16 3.91 -90.82 -0.36 -0.20 16 7 H 0.13 -0.60 7.64 -51.93 -0.40 -1.00 16 8 C -0.15 0.07 7.11 -25.78 -0.18 -0.11 16 9 C 0.10 0.04 1.76 -89.81 -0.16 -0.12 16 10 F -0.18 -0.65 16.37 2.25 0.04 -0.61 16 11 C -0.68 0.85 5.03 37.16 0.19 1.03 16 12 S 2.59 9.08 4.91 -107.50 -0.53 8.56 16 13 O -0.90 -6.75 17.56 -67.04 -1.18 -7.92 16 14 O -0.93 -4.28 15.06 -68.53 -1.03 -5.31 16 15 O -0.64 -2.31 9.84 -54.25 -0.53 -2.85 16 16 C 0.03 0.07 4.81 -39.12 -0.19 -0.12 16 17 C 0.17 0.45 5.93 -39.12 -0.23 0.22 16 18 O -0.30 -0.98 9.73 -41.51 -0.40 -1.38 16 19 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 20 C -0.19 -0.02 9.04 -39.46 -0.36 -0.37 16 21 C -0.06 0.02 8.66 -39.58 -0.34 -0.32 16 22 C -0.10 0.05 5.42 -104.61 -0.57 -0.52 16 23 C -0.07 0.21 2.81 36.01 0.10 0.32 16 24 O -0.54 1.41 12.74 -35.23 -0.45 0.97 16 25 Si 0.68 -2.48 29.78 -169.99 -5.06 -7.54 16 26 C -0.06 0.01 8.02 -39.46 -0.32 -0.31 16 27 C -0.12 0.13 6.89 -25.92 -0.18 -0.05 16 28 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 29 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 30 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 32 H 0.07 -0.02 8.13 -51.93 -0.42 -0.44 16 33 H 0.12 -0.05 8.10 -51.93 -0.42 -0.47 16 34 H 0.11 -0.14 7.32 -51.93 -0.38 -0.52 16 35 H 0.15 -0.71 5.77 -51.92 -0.30 -1.00 16 36 H 0.16 -0.60 8.14 -51.92 -0.42 -1.02 16 37 H 0.06 -0.18 7.66 -51.93 -0.40 -0.58 16 38 H 0.07 -0.16 7.66 -51.93 -0.40 -0.56 16 39 H 0.11 -0.27 8.14 -51.93 -0.42 -0.69 16 40 H 0.15 -0.39 6.30 -52.49 -0.33 -0.72 16 41 H 0.13 -0.22 4.87 -52.49 -0.26 -0.47 16 42 H 0.08 -0.44 7.96 -51.93 -0.41 -0.85 16 43 H 0.39 -2.85 8.74 45.56 0.40 -2.45 16 44 H -0.25 0.39 7.11 56.52 0.40 0.79 16 45 H -0.25 0.10 7.11 56.52 0.40 0.51 16 46 H 0.15 -0.45 7.46 -52.49 -0.39 -0.84 16 47 H 0.10 -0.32 8.10 -51.93 -0.42 -0.74 16 48 H 0.12 0.03 7.44 -51.93 -0.39 -0.35 16 LS Contribution 411.26 15.07 6.20 6.20 Total: 0.00 -13.85 411.26 -10.61 -24.46 By element: Atomic # 1 Polarization: -7.48 SS G_CDS: -6.25 Total: -13.73 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.72 Total: 2.19 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -4.29 Total: -19.51 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 0.04 Total: -0.61 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: -5.06 Total: -7.54 kcal Atomic # 16 Polarization: 9.08 SS G_CDS: -0.53 Total: 8.56 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -13.85 -10.61 -24.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_15494190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.229 kcal (2) G-P(sol) polarization free energy of solvation -13.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds