Wall clock time and date at job start Tue Mar 9 2021 13:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45208 * 109.47223 * 2 1 4 4 C 1.34222 * 117.00248 * 180.02562 * 3 2 1 5 5 O 1.20835 * 119.99916 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00299 * 180.02562 * 4 3 2 7 7 H 1.09004 * 112.84661 * 311.19216 * 6 4 3 8 8 C 1.54053 * 113.69953 * 82.46227 * 6 4 3 9 9 C 1.53774 * 86.98683 * 139.99143 * 8 6 4 10 10 F 1.39904 * 113.61534 * 219.98195 * 9 8 6 11 11 C 1.53007 * 113.61442 * 89.16491 * 9 8 6 12 12 S 1.81393 * 109.47120 * 80.86344 * 11 9 8 13 13 O 1.42097 * 110.54671 * 68.37860 * 12 11 9 14 14 O 1.42104 * 110.54122 * 291.62283 * 12 11 9 15 15 O 1.52202 * 104.44798 * 179.97438 * 12 11 9 16 16 C 1.36005 * 113.99834 * 75.00017 * 15 12 11 17 17 C 1.39152 * 120.07399 * 90.00064 * 16 15 12 18 18 O 1.35995 * 120.07168 * 359.97438 * 17 16 15 19 19 C 1.42905 * 116.99762 * 179.72534 * 18 17 16 20 20 C 1.38564 * 119.85416 * 179.72292 * 17 16 15 21 21 C 1.38240 * 119.99685 * 0.27898 * 20 17 16 22 22 C 1.38253 * 120.14890 * 359.97438 * 21 20 17 23 23 C 1.50704 * 119.92805 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.46811 * 120.00047 * 23 22 21 25 25 Si 1.86303 * 109.46925 * 0.02562 * 23 22 21 26 26 C 1.38239 * 120.14499 * 0.02562 * 22 21 20 27 27 C 1.53774 * 87.17604 * 334.57265 * 9 8 6 28 28 H 1.09002 * 109.47187 * 60.00050 * 1 2 3 29 29 H 1.08995 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47155 * 300.00312 * 1 2 3 31 31 H 1.08993 * 109.47077 * 240.00321 * 2 1 3 32 32 H 1.08994 * 109.47089 * 119.99280 * 2 1 3 33 33 H 1.08998 * 113.61186 * 25.48288 * 8 6 4 34 34 H 1.08999 * 113.69553 * 254.51141 * 8 6 4 35 35 H 1.09000 * 109.46700 * 320.86166 * 11 9 8 36 36 H 1.09002 * 109.46739 * 200.86472 * 11 9 8 37 37 H 1.09000 * 109.47187 * 300.00191 * 19 18 17 38 38 H 1.09001 * 109.46558 * 60.00239 * 19 18 17 39 39 H 1.09001 * 109.47103 * 179.97438 * 19 18 17 40 40 H 1.07997 * 120.00185 * 180.29621 * 20 17 16 41 41 H 1.07998 * 119.92511 * 180.02562 * 21 20 17 42 42 H 1.08993 * 109.47346 * 240.00057 * 23 22 21 43 43 H 0.96706 * 113.99715 * 180.02562 * 24 23 22 44 44 H 1.48492 * 109.99889 * 298.67883 * 25 23 22 45 45 H 1.48506 * 109.99814 * 59.99833 * 25 23 22 46 46 H 1.07999 * 120.00042 * 179.97438 * 26 22 21 47 47 H 1.09004 * 113.61990 * 140.01921 * 27 9 8 48 48 H 1.09006 * 113.61933 * 270.92930 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4708 3.5818 -0.7553 8 6 3.9871 3.5795 1.3988 9 6 5.3568 4.1434 0.9859 10 9 6.3114 4.1012 2.0078 11 6 5.2764 5.5108 0.3041 12 16 5.1155 6.8061 1.5638 13 8 6.3149 6.9209 2.3170 14 8 3.8514 6.7213 2.2074 15 8 5.0466 8.1023 0.7690 16 6 3.8522 8.3104 0.1527 17 6 2.8364 8.9945 0.8134 18 8 3.0357 9.4560 2.0771 19 6 1.9508 10.1546 2.6912 20 6 1.6233 9.2090 0.1791 21 6 1.4223 8.7387 -1.1052 22 6 2.4296 8.0544 -1.7597 23 6 2.2053 7.5443 -3.1599 24 8 3.1619 8.1360 -4.0413 25 14 0.4858 7.9958 -3.7172 26 6 3.6422 7.8370 -1.1325 27 6 5.4582 2.9682 -0.0006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.0403 2.8537 2.2102 34 1 3.2310 4.3469 1.5649 35 1 4.4100 5.5369 -0.3567 36 1 6.1824 5.6804 -0.2778 37 1 1.6997 11.0320 2.0951 38 1 1.0837 9.4970 2.7528 39 1 2.2413 10.4673 3.6941 40 1 0.8350 9.7439 0.6879 41 1 0.4765 8.9069 -1.5987 42 1 2.3195 6.4605 -3.1745 43 1 3.0764 7.8527 -4.9620 44 1 -0.5194 7.3609 -2.8276 45 1 0.3180 9.4712 -3.7019 46 1 4.4274 7.3018 -1.6458 47 1 5.8891 3.2423 -0.9636 48 1 5.9129 2.0755 0.4289 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79710_15494190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:33:31 Heat of formation + Delta-G solvation = -236.220184 kcal Electronic energy + Delta-G solvation = -38837.899173 eV Core-core repulsion = 33483.412929 eV Total energy + Delta-G solvation = -5354.486244 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -49.13279 -42.62345 -41.92495 -40.36791 -39.62150 -39.23524 -38.51292 -37.61941 -37.39829 -37.12706 -32.77516 -32.25603 -32.09119 -31.49750 -28.78406 -27.34472 -27.14695 -26.25853 -24.99670 -24.01209 -23.05577 -22.43875 -21.59731 -20.48456 -19.84539 -19.49879 -19.26626 -18.76689 -18.62719 -18.28291 -18.03846 -17.75489 -17.44675 -17.04431 -16.83818 -16.76423 -16.50591 -16.25225 -16.05286 -15.76223 -15.55569 -15.42461 -15.27142 -14.89700 -14.50860 -14.43929 -14.29885 -14.16047 -13.95961 -13.91723 -13.71524 -13.68941 -13.51641 -13.50492 -13.35233 -13.07190 -13.02164 -12.95712 -12.76841 -12.51553 -12.50833 -12.48032 -12.36971 -12.21279 -12.05684 -11.88025 -11.57975 -11.53789 -11.47072 -10.41217 -10.27808 -9.50268 -4.86458 -1.32538 -0.27398 -0.09633 0.81545 0.97498 1.36028 1.53280 1.72126 1.95890 2.02825 2.09611 2.29005 2.57337 2.71924 2.76043 2.91521 3.11785 3.26325 3.27982 3.38720 3.42068 3.60774 3.69166 3.82919 3.84699 3.97240 4.03208 4.03568 4.06640 4.16319 4.21255 4.24211 4.25836 4.32176 4.38780 4.43020 4.43835 4.55394 4.57740 4.65645 4.68235 4.72234 4.79611 4.82711 4.90087 4.98414 5.01731 5.12948 5.28135 5.40034 6.00925 6.58901 6.98672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.474 3.526 5 O -0.534 6.534 6 C -0.097 4.097 7 H 0.177 0.823 8 C -0.157 4.157 9 C 0.089 3.911 10 F -0.204 7.204 11 C -0.650 4.650 12 S 2.583 3.417 13 O -0.963 6.963 14 O -0.956 6.956 15 O -0.655 6.655 16 C 0.001 3.999 17 C 0.144 3.856 18 O -0.328 6.328 19 C 0.010 3.990 20 C -0.188 4.188 21 C -0.068 4.068 22 C -0.103 4.103 23 C -0.071 4.071 24 O -0.563 6.563 25 Si 0.757 3.243 26 C -0.061 4.061 27 C -0.116 4.116 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.196 0.804 36 H 0.193 0.807 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.170 0.830 41 H 0.142 0.858 42 H 0.118 0.882 43 H 0.407 0.593 44 H -0.278 1.278 45 H -0.298 1.298 46 H 0.185 0.815 47 H 0.132 0.868 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 -0.952 -10.364 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.272 6.272 4 C 0.318 3.682 5 O -0.424 6.424 6 C -0.116 4.116 7 H 0.194 0.806 8 C -0.195 4.195 9 C 0.069 3.931 10 F -0.185 7.185 11 C -0.778 4.778 12 S 2.681 3.319 13 O -0.962 6.962 14 O -0.955 6.955 15 O -0.614 6.614 16 C -0.041 4.041 17 C 0.095 3.905 18 O -0.241 6.241 19 C -0.084 4.084 20 C -0.206 4.206 21 C -0.087 4.087 22 C -0.104 4.104 23 C -0.181 4.181 24 O -0.374 6.374 25 Si 0.663 3.337 26 C -0.080 4.080 27 C -0.154 4.154 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.213 0.787 36 H 0.210 0.790 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.187 0.813 41 H 0.159 0.841 42 H 0.136 0.864 43 H 0.259 0.741 44 H -0.205 1.205 45 H -0.226 1.226 46 H 0.202 0.798 47 H 0.150 0.850 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.016 -0.152 -8.773 12.581 hybrid contribution 0.687 -0.342 0.808 1.114 sum -8.329 -0.493 -7.965 11.535 Atomic orbital electron populations 1.21830 0.90664 1.04248 1.03848 1.23283 0.96940 0.79199 1.02601 1.86515 1.23870 1.33581 1.83273 1.23674 0.80747 0.92466 0.71295 1.90699 1.61189 1.44045 1.46429 1.22519 0.97023 0.91023 1.01021 0.80562 1.23983 0.95950 1.02234 0.97305 1.21887 0.88650 0.94660 0.87885 1.92964 1.66711 1.97380 1.61409 1.31181 1.17857 1.09658 1.19139 1.05746 0.74005 0.75620 0.76484 1.93611 1.49553 1.84697 1.68304 1.93610 1.43100 1.84957 1.73809 1.85771 1.41939 1.60750 1.72918 1.17769 0.80911 1.10841 0.94604 1.19413 0.93434 0.92634 0.85029 1.86162 1.43049 1.69533 1.25361 1.23560 0.88995 0.96405 0.99426 1.21412 0.96557 1.05802 0.96843 1.21189 0.99154 0.94151 0.94166 1.19500 0.93307 1.01061 0.96546 1.24689 1.04629 1.01785 0.86996 1.86453 1.55986 1.71322 1.23600 0.94203 0.73073 0.78025 0.88410 1.21352 0.98791 0.98325 0.89565 1.23612 0.93926 0.96481 1.01428 0.90763 0.88679 0.91516 0.90881 0.91737 0.87640 0.86287 0.78664 0.78979 0.90289 0.90514 0.86561 0.81263 0.84101 0.86407 0.74144 1.20509 1.22613 0.79752 0.84986 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.80 10.29 71.98 0.74 1.54 16 2 C 0.05 -0.05 6.19 71.98 0.45 0.39 16 3 O -0.36 -0.28 10.22 -51.34 -0.52 -0.81 16 4 C 0.47 0.77 7.49 71.23 0.53 1.30 16 5 O -0.53 -4.45 15.65 21.94 0.34 -4.11 16 6 C -0.10 0.50 3.91 -10.92 -0.04 0.46 16 7 H 0.18 -2.45 7.64 -2.39 -0.02 -2.47 16 8 C -0.16 0.21 7.11 31.21 0.22 0.43 16 9 C 0.09 -0.01 1.76 -10.27 -0.02 -0.03 16 10 F -0.20 -1.75 16.37 44.97 0.74 -1.01 16 11 C -0.65 2.95 5.03 71.98 0.36 3.32 16 12 S 2.58 20.81 4.91 -56.49 -0.28 20.54 16 13 O -0.96 -17.02 17.56 -118.57 -2.08 -19.10 16 14 O -0.96 -10.40 15.06 -117.14 -1.76 -12.16 16 15 O -0.65 -5.33 9.84 -60.62 -0.60 -5.93 16 16 C 0.00 0.01 4.81 22.57 0.11 0.11 16 17 C 0.14 0.88 5.93 22.57 0.13 1.02 16 18 O -0.33 -2.82 9.73 -72.66 -0.71 -3.53 16 19 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 20 C -0.19 -0.07 9.04 22.35 0.20 0.14 16 21 C -0.07 0.10 8.66 22.27 0.19 0.29 16 22 C -0.10 0.32 5.42 -19.86 -0.11 0.21 16 23 C -0.07 0.67 2.81 71.24 0.20 0.87 16 24 O -0.56 4.78 12.74 -148.98 -1.90 2.89 16 25 Si 0.76 -6.72 29.78 68.60 2.04 -4.68 16 26 C -0.06 0.14 8.02 22.35 0.18 0.32 16 27 C -0.12 0.45 6.89 31.12 0.21 0.67 16 28 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.09 -0.75 8.14 -2.39 -0.02 -0.76 16 30 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.07 -0.09 8.13 -2.39 -0.02 -0.11 16 32 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 33 H 0.11 0.05 8.10 -2.39 -0.02 0.04 16 34 H 0.12 -0.35 7.32 -2.39 -0.02 -0.37 16 35 H 0.20 -2.62 5.77 -2.39 -0.01 -2.63 16 36 H 0.19 -2.07 8.14 -2.39 -0.02 -2.09 16 37 H 0.08 -0.40 7.66 -2.39 -0.02 -0.42 16 38 H 0.08 -0.30 7.66 -2.39 -0.02 -0.32 16 39 H 0.12 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.17 -0.86 6.30 -2.91 -0.02 -0.88 16 41 H 0.14 -0.53 4.87 -2.91 -0.01 -0.55 16 42 H 0.12 -1.94 7.96 -2.39 -0.02 -1.96 16 43 H 0.41 -7.46 8.74 -74.05 -0.65 -8.10 16 44 H -0.28 1.19 7.11 99.48 0.71 1.90 16 45 H -0.30 0.15 7.11 99.48 0.71 0.86 16 46 H 0.19 -1.81 7.46 -2.91 -0.02 -1.84 16 47 H 0.13 -1.36 8.10 -2.39 -0.02 -1.38 16 48 H 0.10 0.06 7.44 -2.38 -0.02 0.04 16 Total: 0.00 -38.16 411.26 0.17 -38.00 By element: Atomic # 1 Polarization: -22.65 SS G_CDS: 0.41 Total: -22.24 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.48 Total: 12.14 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -7.23 Total: -42.75 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.74 Total: -1.01 kcal Atomic # 14 Polarization: -6.72 SS G_CDS: 2.04 Total: -4.68 kcal Atomic # 16 Polarization: 20.81 SS G_CDS: -0.28 Total: 20.54 kcal Total: -38.16 0.17 -38.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_15494190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.223 kcal (2) G-P(sol) polarization free energy of solvation -38.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds