Wall clock time and date at job start Tue Mar 9 2021 13:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.46634 * 2 1 4 4 C 1.34238 * 116.99762 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99994 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99649 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47545 * 60.00398 * 6 4 3 8 8 C 1.53005 * 109.47088 * 180.02562 * 6 4 3 9 9 C 1.53002 * 109.47197 * 180.02562 * 8 6 4 10 10 C 1.53006 * 109.46886 * 299.99586 * 9 8 6 11 11 F 1.39895 * 109.46747 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46997 * 300.00398 * 10 9 8 13 13 S 1.81399 * 109.46810 * 180.02562 * 12 10 9 14 14 O 1.42100 * 110.54409 * 291.62399 * 13 12 10 15 15 O 1.42103 * 110.54456 * 68.37178 * 13 12 10 16 16 O 1.52200 * 104.44943 * 179.97438 * 13 12 10 17 17 C 1.35990 * 114.00245 * 74.99844 * 16 13 12 18 18 C 1.39154 * 120.07354 * 89.99788 * 17 16 13 19 19 O 1.35997 * 120.07291 * 0.02764 * 18 17 16 20 20 C 1.42901 * 117.00059 * 179.97438 * 19 18 17 21 21 C 1.38571 * 119.85760 * 180.02562 * 18 17 16 22 22 C 1.38243 * 119.99326 * 0.02562 * 21 18 17 23 23 C 1.38253 * 120.14724 * 359.97438 * 22 21 18 24 24 C 1.50701 * 119.92232 * 180.02562 * 23 22 21 25 25 O 1.42897 * 109.46827 * 244.99744 * 24 23 22 26 26 Si 1.86307 * 109.47218 * 4.99404 * 24 23 22 27 27 C 1.38239 * 120.14935 * 359.76121 * 23 22 21 28 28 C 1.52997 * 109.46974 * 60.00412 * 10 9 8 29 29 C 1.53006 * 109.47445 * 299.99757 * 28 10 9 30 30 H 1.09005 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47320 * 299.99974 * 1 2 3 32 32 H 1.08993 * 109.47538 * 60.00261 * 1 2 3 33 33 H 1.08991 * 109.47245 * 240.00202 * 2 1 3 34 34 H 1.09003 * 109.47276 * 119.99247 * 2 1 3 35 35 H 1.09001 * 109.46812 * 59.99693 * 8 6 4 36 36 H 1.09002 * 109.46935 * 300.00034 * 8 6 4 37 37 H 1.08996 * 109.46698 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47142 * 59.99766 * 9 8 6 39 39 H 1.09000 * 109.47486 * 60.00167 * 12 10 9 40 40 H 1.09001 * 109.47362 * 299.99445 * 12 10 9 41 41 H 1.08991 * 109.47329 * 300.00106 * 20 19 18 42 42 H 1.08996 * 109.47072 * 60.00328 * 20 19 18 43 43 H 1.09006 * 109.46936 * 179.97438 * 20 19 18 44 44 H 1.07991 * 119.99884 * 180.02562 * 21 18 17 45 45 H 1.07999 * 119.91848 * 179.97438 * 22 21 18 46 46 H 1.08997 * 109.47451 * 124.99792 * 24 23 22 47 47 H 0.96701 * 114.00396 * 60.00216 * 25 24 23 48 48 H 1.48496 * 109.99703 * 180.02562 * 26 24 23 49 49 H 1.48493 * 109.99888 * 301.32075 * 26 24 23 50 50 H 1.08003 * 120.00303 * 180.27724 * 27 23 22 51 51 H 1.09001 * 109.47375 * 59.99624 * 28 10 9 52 52 H 1.09002 * 109.47497 * 179.97438 * 28 10 9 53 53 H 1.09001 * 109.46726 * 300.00265 * 29 28 10 54 54 H 1.08988 * 109.47757 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 3.5843 3.4694 0.8912 8 6 5.4485 2.8576 0.0010 9 6 6.0332 4.2715 0.0023 10 6 5.5615 5.0195 -1.2464 11 9 6.0966 6.3121 -1.2455 12 6 6.0331 4.2736 -2.4962 13 16 5.4746 5.1609 -3.9765 14 8 4.0612 5.0831 -4.1009 15 8 6.1535 6.4032 -4.0992 16 8 6.0005 4.3300 -5.1383 17 6 5.3078 3.1798 -5.3539 18 6 4.2157 3.1747 -6.2162 19 8 3.8390 4.3199 -6.8456 20 6 2.7091 4.2399 -7.7168 21 6 3.5128 2.0002 -6.4323 22 6 3.8968 0.8371 -5.7913 23 6 4.9819 0.8422 -4.9346 24 6 5.3964 -0.4287 -4.2389 25 8 5.2143 -0.2813 -2.8293 26 14 4.3522 -1.8432 -4.8554 27 6 5.6907 2.0093 -4.7189 28 6 4.0337 5.0995 -1.2462 29 6 3.4488 3.6856 -1.2475 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 5.7844 2.3259 -0.8892 36 1 5.7845 2.3251 0.8908 37 1 7.1216 4.2145 0.0027 38 1 5.6972 4.8029 0.8928 39 1 5.6166 3.2664 -2.4971 40 1 7.1216 4.2167 -2.4963 41 1 2.9131 3.5225 -8.5115 42 1 1.8359 3.9161 -7.1505 43 1 2.5161 5.2202 -8.1525 44 1 2.6651 1.9936 -7.1013 45 1 3.3478 -0.0775 -5.9602 46 1 6.4460 -0.6329 -4.4503 47 1 4.3017 -0.0975 -2.5677 48 1 4.7508 -3.1022 -4.1765 49 1 2.9162 -1.5625 -4.6018 50 1 6.5407 2.0095 -4.0526 51 1 3.6977 5.6308 -0.3558 52 1 3.6976 5.6328 -2.1355 53 1 3.7848 3.1543 -2.1379 54 1 2.3604 3.7425 -1.2478 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79710_16464696.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:33:41 Heat of formation + Delta-G solvation = -269.052193 kcal Electronic energy + Delta-G solvation = -45998.843125 eV Core-core repulsion = 40331.857940 eV Total energy + Delta-G solvation = -5666.985185 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -49.11596 -42.58090 -41.82910 -40.32637 -39.65744 -39.33188 -38.49099 -37.63755 -37.41756 -37.21675 -33.57509 -32.50990 -32.11278 -32.05270 -31.90590 -29.34071 -28.64269 -26.32429 -25.41576 -24.88956 -24.18593 -23.62263 -23.09003 -21.96622 -21.63078 -20.48410 -19.72363 -19.40541 -18.86683 -18.76546 -18.73354 -18.15855 -17.91570 -17.66482 -17.46250 -17.20591 -16.86631 -16.67919 -16.46018 -16.29061 -16.10170 -15.93682 -15.54958 -15.42934 -15.34733 -15.02338 -14.93442 -14.62717 -14.48236 -14.33032 -14.21904 -14.08467 -13.96693 -13.71161 -13.58340 -13.52067 -13.46073 -13.31875 -13.27898 -13.12177 -13.09270 -12.88405 -12.80192 -12.72505 -12.50640 -12.48726 -12.28524 -12.26954 -12.14390 -11.97636 -11.69844 -11.61698 -11.50914 -11.35402 -11.16060 -10.69708 -10.31150 -9.48394 -4.93248 -1.27721 -0.18160 -0.03151 0.84509 1.11986 1.28271 1.56856 1.61481 1.97172 2.03573 2.18955 2.32125 2.68513 2.79909 3.06827 3.10249 3.30642 3.36812 3.41182 3.47037 3.51013 3.59274 3.65313 3.79042 3.85965 3.93834 3.95482 3.97378 4.02032 4.03248 4.17142 4.20319 4.21958 4.27272 4.31112 4.31975 4.36234 4.52544 4.52604 4.62041 4.66623 4.73313 4.74502 4.76248 4.81613 4.86779 4.88043 4.90338 4.92349 4.97767 5.07462 5.08916 5.12664 5.21723 5.36389 5.45297 6.10617 6.37350 6.69660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.520 6.520 6 C -0.082 4.082 7 H 0.135 0.865 8 C -0.104 4.104 9 C -0.122 4.122 10 C 0.131 3.869 11 F -0.210 7.210 12 C -0.681 4.681 13 S 2.587 3.413 14 O -0.948 6.948 15 O -0.965 6.965 16 O -0.659 6.659 17 C -0.005 4.005 18 C 0.150 3.850 19 O -0.331 6.331 20 C 0.009 3.991 21 C -0.184 4.184 22 C -0.048 4.048 23 C -0.137 4.137 24 C -0.084 4.084 25 O -0.533 6.533 26 Si 0.762 3.238 27 C -0.069 4.069 28 C -0.173 4.173 29 C -0.103 4.103 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.178 0.822 45 H 0.168 0.832 46 H 0.136 0.864 47 H 0.376 0.624 48 H -0.305 1.305 49 H -0.269 1.269 50 H 0.163 0.837 51 H 0.118 0.882 52 H 0.083 0.917 53 H 0.069 0.931 54 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -7.186 -1.568 9.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.408 6.408 6 C -0.101 4.101 7 H 0.153 0.847 8 C -0.142 4.142 9 C -0.161 4.161 10 C 0.111 3.889 11 F -0.190 7.190 12 C -0.809 4.809 13 S 2.685 3.315 14 O -0.947 6.947 15 O -0.963 6.963 16 O -0.618 6.618 17 C -0.047 4.047 18 C 0.100 3.900 19 O -0.243 6.243 20 C -0.084 4.084 21 C -0.202 4.202 22 C -0.066 4.066 23 C -0.138 4.138 24 C -0.193 4.193 25 O -0.339 6.339 26 Si 0.667 3.333 27 C -0.089 4.089 28 C -0.210 4.210 29 C -0.141 4.141 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.193 0.807 40 H 0.193 0.807 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.131 0.869 44 H 0.195 0.805 45 H 0.185 0.815 46 H 0.153 0.847 47 H 0.224 0.776 48 H -0.233 1.233 49 H -0.195 1.195 50 H 0.181 0.819 51 H 0.136 0.864 52 H 0.101 0.899 53 H 0.088 0.912 54 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.434 -7.378 -1.913 9.361 hybrid contribution 0.149 0.525 1.275 1.387 sum -5.285 -6.852 -0.638 8.677 Atomic orbital electron populations 1.21832 0.91150 1.04076 1.03732 1.23210 0.96613 0.79484 1.02515 1.86536 1.24352 1.33222 1.83583 1.23970 0.80635 0.92877 0.71733 1.90718 1.60700 1.43655 1.45728 1.21279 0.96629 0.89275 1.02910 0.84689 1.21491 0.91529 0.96070 1.05063 1.22066 1.03090 0.95402 0.95523 1.20735 0.94620 0.78115 0.95392 1.92966 1.88059 1.40498 1.97525 1.31597 1.16513 1.16359 1.16382 1.05710 0.74508 0.75096 0.76175 1.93601 1.31164 1.86078 1.83827 1.93605 1.76122 1.41537 1.85081 1.85744 1.67830 1.42020 1.66219 1.17748 0.95924 0.83575 1.07447 1.19424 0.91929 0.87515 0.91087 1.86163 1.49305 1.30830 1.58028 1.23574 0.86011 1.06108 0.92733 1.21545 1.03165 0.90398 1.05138 1.21432 0.94255 0.98680 0.92268 1.20158 0.97329 0.95441 1.00852 1.25294 1.10431 1.00320 0.83221 1.86692 1.33333 1.93133 1.20786 0.94303 0.76198 0.73445 0.89363 1.21238 0.99970 0.89419 0.98281 1.22637 0.91537 0.99901 1.06932 1.21473 1.03104 0.93318 0.96157 0.88837 0.91393 0.91215 0.91164 0.91490 0.90160 0.89360 0.88496 0.87873 0.80713 0.80710 0.89712 0.90447 0.86937 0.80471 0.81462 0.84671 0.77575 1.23302 1.19544 0.81916 0.86409 0.89900 0.91245 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.82 10.29 71.98 0.74 1.56 16 2 C 0.06 -0.11 6.19 71.98 0.45 0.33 16 3 O -0.36 0.01 10.12 -51.49 -0.52 -0.51 16 4 C 0.46 0.13 7.26 71.23 0.52 0.65 16 5 O -0.52 -2.54 15.51 21.97 0.34 -2.20 16 6 C -0.08 0.33 2.63 -11.54 -0.03 0.30 16 7 H 0.14 -1.05 8.14 -2.39 -0.02 -1.07 16 8 C -0.10 0.42 4.22 30.60 0.13 0.55 16 9 C -0.12 0.51 5.19 30.60 0.16 0.67 16 10 C 0.13 0.11 1.10 -10.79 -0.01 0.10 16 11 F -0.21 -1.57 16.08 44.97 0.72 -0.85 16 12 C -0.68 -0.23 4.06 71.98 0.29 0.06 16 13 S 2.59 24.64 4.51 -56.49 -0.25 24.39 16 14 O -0.95 -9.93 13.44 -117.15 -1.57 -11.50 16 15 O -0.97 -17.96 17.60 -118.57 -2.09 -20.05 16 16 O -0.66 -6.16 9.84 -60.46 -0.59 -6.76 16 17 C 0.00 -0.02 4.80 22.57 0.11 0.09 16 18 C 0.15 0.58 5.93 22.57 0.13 0.71 16 19 O -0.33 -2.15 9.73 -72.71 -0.71 -2.85 16 20 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 21 C -0.18 0.72 9.04 22.35 0.20 0.93 16 22 C -0.05 0.30 8.66 22.27 0.19 0.50 16 23 C -0.14 0.56 5.35 -19.86 -0.11 0.45 16 24 C -0.08 0.41 2.80 71.24 0.20 0.60 16 25 O -0.53 0.18 12.84 -148.98 -1.91 -1.73 16 26 Si 0.76 -4.64 29.88 68.60 2.05 -2.59 16 27 C -0.07 0.06 8.10 22.35 0.18 0.24 16 28 C -0.17 0.09 4.71 30.60 0.14 0.24 16 29 C -0.10 0.31 4.86 30.60 0.15 0.46 16 30 H 0.09 -0.73 8.14 -2.38 -0.02 -0.75 16 31 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.07 -0.19 8.13 -2.39 -0.02 -0.21 16 34 H 0.07 -0.08 8.13 -2.39 -0.02 -0.10 16 35 H 0.08 -0.27 6.39 -2.39 -0.02 -0.29 16 36 H 0.09 -0.32 8.10 -2.39 -0.02 -0.34 16 37 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.18 -0.70 3.29 -2.39 -0.01 -0.71 16 40 H 0.18 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.08 -0.72 7.66 -2.39 -0.02 -0.74 16 42 H 0.08 -0.51 7.66 -2.39 -0.02 -0.53 16 43 H 0.11 -0.58 8.14 -2.38 -0.02 -0.59 16 44 H 0.18 -1.82 6.30 -2.92 -0.02 -1.84 16 45 H 0.17 -1.98 4.83 -2.91 -0.01 -2.00 16 46 H 0.14 -0.95 7.96 -2.39 -0.02 -0.97 16 47 H 0.38 -1.00 8.48 -74.06 -0.63 -1.62 16 48 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 49 H -0.27 1.10 7.00 99.48 0.70 1.80 16 50 H 0.16 -0.76 7.52 -2.91 -0.02 -0.78 16 51 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 52 H 0.08 0.27 5.47 -2.39 -0.01 0.26 16 53 H 0.07 -0.18 6.43 -2.39 -0.02 -0.20 16 54 H 0.10 -0.40 8.11 -2.39 -0.02 -0.42 16 Total: 0.00 -30.07 436.40 0.38 -29.69 By element: Atomic # 1 Polarization: -14.91 SS G_CDS: 0.36 Total: -14.55 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 4.56 Total: 9.52 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -7.06 Total: -45.61 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.72 Total: -0.85 kcal Atomic # 14 Polarization: -4.64 SS G_CDS: 2.05 Total: -2.59 kcal Atomic # 16 Polarization: 24.64 SS G_CDS: -0.25 Total: 24.39 kcal Total: -30.07 0.38 -29.69 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_16464696.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.362 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds