Wall clock time and date at job start Tue Mar 9 2021 13:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.46693 * 2 1 4 4 C 1.34229 * 116.99783 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99969 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99842 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47124 * 60.00418 * 6 4 3 8 8 C 1.52999 * 109.47162 * 180.02562 * 6 4 3 9 9 C 1.53000 * 109.47221 * 180.02562 * 8 6 4 10 10 C 1.52993 * 109.47297 * 299.99705 * 9 8 6 11 11 F 1.39899 * 109.47459 * 300.00268 * 10 9 8 12 12 C 1.53000 * 109.47297 * 179.97438 * 10 9 8 13 13 S 1.81400 * 109.47206 * 185.00598 * 12 10 9 14 14 O 1.42096 * 110.54725 * 68.37236 * 13 12 10 15 15 O 1.42106 * 110.54195 * 291.62206 * 13 12 10 16 16 O 1.52197 * 104.45166 * 180.02562 * 13 12 10 17 17 C 1.35987 * 114.00456 * 74.99284 * 16 13 12 18 18 C 1.39159 * 120.07810 * 270.02957 * 17 16 13 19 19 O 1.35990 * 120.06798 * 359.97438 * 18 17 16 20 20 C 1.42906 * 117.00147 * 180.02562 * 19 18 17 21 21 C 1.38556 * 119.85678 * 179.97438 * 18 17 16 22 22 C 1.38247 * 119.99955 * 359.72555 * 21 18 17 23 23 C 1.38252 * 120.14413 * 0.54977 * 22 21 18 24 24 C 1.50703 * 119.92616 * 179.72619 * 23 22 21 25 25 O 1.42896 * 109.47055 * 119.72473 * 24 23 22 26 26 Si 1.86304 * 109.46911 * 359.72365 * 24 23 22 27 27 C 1.38239 * 120.14729 * 359.44577 * 23 22 21 28 28 C 1.53003 * 109.46989 * 60.00261 * 10 9 8 29 29 C 1.53000 * 109.46888 * 299.99990 * 28 10 9 30 30 H 1.08993 * 109.47086 * 60.00524 * 1 2 3 31 31 H 1.09007 * 109.46596 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47342 * 299.99777 * 1 2 3 33 33 H 1.09001 * 109.47342 * 240.00223 * 2 1 3 34 34 H 1.09001 * 109.47139 * 119.99847 * 2 1 3 35 35 H 1.09006 * 109.47272 * 60.00305 * 8 6 4 36 36 H 1.09002 * 109.47240 * 300.00524 * 8 6 4 37 37 H 1.09004 * 109.47129 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.46884 * 60.00430 * 9 8 6 39 39 H 1.08995 * 109.47337 * 65.00001 * 12 10 9 40 40 H 1.09001 * 109.47219 * 304.99995 * 12 10 9 41 41 H 1.09001 * 109.46819 * 60.00086 * 20 19 18 42 42 H 1.08992 * 109.47460 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.46617 * 300.00727 * 20 19 18 44 44 H 1.08002 * 120.00126 * 179.97438 * 21 18 17 45 45 H 1.08001 * 119.92754 * 180.28856 * 22 21 18 46 46 H 1.09002 * 109.47152 * 239.72281 * 24 23 22 47 47 H 0.96703 * 114.00193 * 180.02562 * 25 24 23 48 48 H 1.48495 * 110.00011 * 60.00027 * 26 24 23 49 49 H 1.48509 * 109.99497 * 181.32041 * 26 24 23 50 50 H 1.07999 * 120.00186 * 180.25289 * 27 23 22 51 51 H 1.09006 * 109.47360 * 59.99680 * 28 10 9 52 52 H 1.08994 * 109.47406 * 180.02562 * 28 10 9 53 53 H 1.08999 * 109.47213 * 299.99862 * 29 28 10 54 54 H 1.09004 * 109.47129 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9376 0.0000 7 1 3.5842 3.4702 0.8895 8 6 5.4484 2.8576 0.0001 9 6 6.0331 4.2715 0.0002 10 6 5.5618 5.0184 -1.2490 11 9 5.9930 4.3355 -2.3913 12 6 6.1460 6.4325 -1.2486 13 16 5.4706 7.3662 -2.6496 14 8 4.0851 7.6181 -2.4595 15 8 5.9585 6.8446 -3.8781 16 8 6.1206 8.7380 -2.5404 17 6 7.4242 8.7648 -2.9265 18 6 8.4320 8.5275 -1.9966 19 8 8.1152 8.2688 -0.6997 20 6 9.2013 8.0353 0.1993 21 6 9.7587 8.5554 -2.3951 22 6 10.0787 8.8129 -3.7151 23 6 9.0778 9.0543 -4.6378 24 6 9.4325 9.3406 -6.0742 25 8 8.8426 8.3490 -6.9172 26 14 11.2843 9.3051 -6.2755 27 6 7.7521 9.0279 -4.2469 28 6 4.0338 5.0984 -1.2492 29 6 3.4491 3.6846 -1.2493 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.7845 2.3251 -0.8897 36 1 5.7844 2.3258 0.8903 37 1 7.1217 4.2145 -0.0002 38 1 5.6971 4.8035 0.8902 39 1 7.2309 6.3774 -1.3378 40 1 5.8830 6.9340 -0.3172 41 1 9.8468 8.9132 0.2250 42 1 8.8109 7.8425 1.1985 43 1 9.7746 7.1725 -0.1400 44 1 10.5427 8.3719 -1.6753 45 1 11.1131 8.8298 -4.0254 46 1 9.0556 10.3248 -6.3523 47 1 9.0300 8.4706 -7.8581 48 1 11.8105 7.9684 -5.8994 49 1 11.6484 9.6174 -7.6809 50 1 6.9720 9.2127 -4.9704 51 1 3.6977 5.6305 -0.3592 52 1 3.6979 5.6302 -2.1394 53 1 3.7851 3.1525 -2.1392 54 1 2.3606 3.7416 -1.2489 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79710_16464698.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:33:47 Heat of formation + Delta-G solvation = -273.259968 kcal Electronic energy + Delta-G solvation = -43374.602238 eV Core-core repulsion = 37707.434590 eV Total energy + Delta-G solvation = -5667.167648 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -49.09438 -42.58349 -41.80363 -40.31820 -39.25521 -39.11090 -38.48820 -37.69183 -37.40716 -37.34572 -34.21190 -32.64066 -32.16950 -32.10875 -31.88670 -29.14422 -28.59258 -26.29321 -25.13313 -24.93700 -24.20263 -23.59512 -22.88336 -21.95356 -21.43842 -20.88046 -19.75675 -19.31566 -18.92247 -18.79929 -18.57132 -18.48620 -17.91965 -17.72016 -17.54698 -17.21896 -16.91462 -16.70075 -16.55570 -16.20771 -16.10418 -15.79336 -15.62173 -15.32007 -15.24675 -15.04044 -14.87987 -14.55465 -14.37586 -14.18858 -14.04069 -13.94194 -13.85506 -13.75390 -13.70620 -13.50458 -13.49199 -13.35680 -13.21907 -13.20205 -13.13628 -13.01007 -12.93862 -12.63628 -12.52667 -12.46807 -12.35741 -12.21443 -12.04739 -11.96356 -11.80210 -11.74390 -11.58102 -11.36973 -11.13906 -10.55710 -10.24993 -9.48525 -4.93204 -1.22807 -0.16212 -0.01500 0.85994 1.04474 1.28570 1.58287 1.63221 1.93517 1.97954 2.19573 2.32008 2.71281 2.85378 3.08098 3.25997 3.29350 3.32930 3.44837 3.50668 3.54447 3.65769 3.70941 3.77265 3.94095 3.95770 3.98717 4.01011 4.01479 4.05339 4.14185 4.26921 4.28685 4.30434 4.34645 4.37982 4.45705 4.47216 4.53257 4.59350 4.71216 4.75017 4.77127 4.77893 4.82994 4.86618 4.87553 4.91525 4.92728 4.97832 5.06097 5.10971 5.15731 5.23141 5.36336 5.40799 6.03992 6.57611 6.61279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.539 6.539 6 C -0.077 4.077 7 H 0.149 0.851 8 C -0.109 4.109 9 C -0.118 4.118 10 C 0.124 3.876 11 F -0.213 7.213 12 C -0.647 4.647 13 S 2.576 3.424 14 O -0.954 6.954 15 O -0.976 6.976 16 O -0.655 6.655 17 C -0.001 4.001 18 C 0.128 3.872 19 O -0.320 6.320 20 C 0.002 3.998 21 C -0.177 4.177 22 C -0.051 4.051 23 C -0.107 4.107 24 C -0.100 4.100 25 O -0.561 6.561 26 Si 0.786 3.214 27 C -0.050 4.050 28 C -0.177 4.177 29 C -0.109 4.109 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.164 0.836 40 H 0.198 0.802 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.192 0.808 45 H 0.172 0.828 46 H 0.097 0.903 47 H 0.396 0.604 48 H -0.287 1.287 49 H -0.288 1.288 50 H 0.131 0.869 51 H 0.135 0.865 52 H 0.071 0.929 53 H 0.058 0.942 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 4.839 7.572 11.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.096 4.096 7 H 0.166 0.834 8 C -0.147 4.147 9 C -0.156 4.156 10 C 0.105 3.895 11 F -0.194 7.194 12 C -0.777 4.777 13 S 2.676 3.324 14 O -0.952 6.952 15 O -0.975 6.975 16 O -0.614 6.614 17 C -0.044 4.044 18 C 0.079 3.921 19 O -0.233 6.233 20 C -0.091 4.091 21 C -0.195 4.195 22 C -0.069 4.069 23 C -0.108 4.108 24 C -0.207 4.207 25 O -0.372 6.372 26 Si 0.689 3.311 27 C -0.070 4.070 28 C -0.214 4.214 29 C -0.147 4.147 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.146 0.854 39 H 0.182 0.818 40 H 0.215 0.785 41 H 0.098 0.902 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.209 0.791 45 H 0.189 0.811 46 H 0.115 0.885 47 H 0.246 0.754 48 H -0.214 1.214 49 H -0.215 1.215 50 H 0.149 0.851 51 H 0.153 0.847 52 H 0.089 0.911 53 H 0.077 0.923 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.993 4.260 7.292 10.964 hybrid contribution -0.791 -1.075 -1.283 1.851 sum 6.202 3.185 6.010 9.204 Atomic orbital electron populations 1.21825 0.90630 1.04272 1.03780 1.23254 0.96970 0.79378 1.02417 1.86517 1.24200 1.33446 1.83441 1.24215 0.80607 0.93181 0.71069 1.90670 1.61126 1.44387 1.46672 1.21284 0.96647 0.88619 1.03024 0.83374 1.21470 0.91646 0.97519 1.04021 1.22130 1.03140 0.94426 0.95947 1.20872 0.94818 0.88237 0.85571 1.92936 1.91348 1.81683 1.53441 1.31335 1.15278 1.07929 1.23122 1.05968 0.74975 0.74184 0.77246 1.93601 1.31254 1.82843 1.87500 1.93648 1.80799 1.79727 1.43278 1.85700 1.31746 1.57119 1.86847 1.17628 0.76819 1.16421 0.93503 1.19154 0.92701 0.95671 0.84573 1.86155 1.37950 1.84227 1.14986 1.23712 0.89539 1.03020 0.92849 1.21591 0.94091 1.05534 0.98281 1.21396 1.00087 0.93119 0.92319 1.19380 0.92039 1.03808 0.95580 1.25301 1.12816 0.94308 0.88236 1.86615 1.75652 1.52434 1.22453 0.94291 0.71309 0.83094 0.82415 1.21074 0.98352 0.94796 0.92814 1.22785 0.92342 0.99256 1.07035 1.21455 1.02809 0.94022 0.96395 0.91442 0.88560 0.90974 0.91819 0.91122 0.92593 0.89057 0.88134 0.85427 0.81849 0.78459 0.90185 0.85331 0.90200 0.79051 0.81141 0.88514 0.75393 1.21374 1.21530 0.85073 0.84697 0.91065 0.92321 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 10.29 71.98 0.74 1.06 16 2 C 0.05 0.14 6.19 71.98 0.45 0.58 16 3 O -0.36 -1.78 10.12 -51.41 -0.52 -2.30 16 4 C 0.46 2.80 7.26 71.23 0.52 3.32 16 5 O -0.54 -6.67 15.73 21.95 0.35 -6.33 16 6 C -0.08 0.04 2.63 -11.54 -0.03 0.01 16 7 H 0.15 -1.07 8.14 -2.39 -0.02 -1.09 16 8 C -0.11 0.06 4.37 30.59 0.13 0.20 16 9 C -0.12 0.65 5.00 30.59 0.15 0.81 16 10 C 0.12 0.12 0.89 -10.79 -0.01 0.11 16 11 F -0.21 -1.94 15.33 44.97 0.69 -1.25 16 12 C -0.65 0.64 3.84 71.98 0.28 0.91 16 13 S 2.58 25.42 4.41 -56.49 -0.25 25.17 16 14 O -0.95 -13.42 15.64 -118.57 -1.85 -15.28 16 15 O -0.98 -16.59 15.96 -118.57 -1.89 -18.48 16 16 O -0.65 -6.13 9.84 -60.42 -0.59 -6.73 16 17 C 0.00 -0.01 4.81 22.57 0.11 0.10 16 18 C 0.13 -0.03 5.83 22.57 0.13 0.10 16 19 O -0.32 1.59 7.49 -79.57 -0.60 1.00 16 20 C 0.00 -0.03 9.81 113.37 1.11 1.09 16 21 C -0.18 0.98 9.04 22.35 0.20 1.19 16 22 C -0.05 0.18 8.66 22.28 0.19 0.37 16 23 C -0.11 -0.28 5.42 -19.86 -0.11 -0.39 16 24 C -0.10 0.02 2.81 71.24 0.20 0.22 16 25 O -0.56 -2.77 12.74 -148.98 -1.90 -4.67 16 26 Si 0.79 -3.66 29.78 68.60 2.04 -1.62 16 27 C -0.05 -0.40 8.60 22.35 0.19 -0.21 16 28 C -0.18 -0.22 4.32 30.60 0.13 -0.09 16 29 C -0.11 -0.17 5.01 30.59 0.15 -0.02 16 30 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.10 -0.49 8.14 -2.38 -0.02 -0.51 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.21 16 33 H 0.06 0.24 8.13 -2.39 -0.02 0.22 16 34 H 0.07 0.17 8.13 -2.39 -0.02 0.15 16 35 H 0.06 0.29 7.76 -2.38 -0.02 0.27 16 36 H 0.09 -0.16 8.10 -2.39 -0.02 -0.18 16 37 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.13 -1.59 8.14 -2.39 -0.02 -1.61 16 39 H 0.16 -0.60 6.00 -2.39 -0.01 -0.62 16 40 H 0.20 -1.78 8.10 -2.39 -0.02 -1.80 16 41 H 0.08 -1.25 7.66 -2.39 -0.02 -1.27 16 42 H 0.13 -2.19 8.14 -2.39 -0.02 -2.21 16 43 H 0.08 -1.29 7.66 -2.39 -0.02 -1.31 16 44 H 0.19 -2.73 6.30 -2.91 -0.02 -2.75 16 45 H 0.17 -1.69 4.87 -2.91 -0.01 -1.71 16 46 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 47 H 0.40 -1.43 8.74 -74.05 -0.65 -2.08 16 48 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 49 H -0.29 -0.09 7.11 99.48 0.71 0.62 16 50 H 0.13 1.32 8.06 -2.91 -0.02 1.29 16 51 H 0.13 -0.73 8.14 -2.38 -0.02 -0.75 16 52 H 0.07 0.45 5.40 -2.39 -0.01 0.44 16 53 H 0.06 0.33 7.80 -2.39 -0.02 0.31 16 54 H 0.10 -0.02 8.11 -2.39 -0.02 -0.04 16 Total: 0.00 -37.26 439.98 0.35 -36.90 By element: Atomic # 1 Polarization: -16.12 SS G_CDS: 0.34 Total: -15.78 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 4.54 Total: 9.35 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -7.01 Total: -52.78 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.69 Total: -1.25 kcal Atomic # 14 Polarization: -3.66 SS G_CDS: 2.04 Total: -1.62 kcal Atomic # 16 Polarization: 25.42 SS G_CDS: -0.25 Total: 25.17 kcal Total: -37.26 0.35 -36.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_16464698.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.357 kcal (2) G-P(sol) polarization free energy of solvation -37.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds