Wall clock time and date at job start Tue Mar 9 2021 13:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47028 * 2 1 4 4 C 1.34226 * 117.00062 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00192 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00175 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.90925 * 48.74115 * 6 4 3 8 8 C 1.53784 * 113.61605 * 179.97438 * 6 4 3 9 9 C 1.53787 * 87.07923 * 139.97671 * 8 6 4 10 10 F 1.39902 * 113.60965 * 89.11787 * 9 8 6 11 11 C 1.53001 * 113.61313 * 219.93272 * 9 8 6 12 12 S 1.81395 * 109.47101 * 180.02562 * 11 9 8 13 13 O 1.42102 * 110.54326 * 291.62955 * 12 11 9 14 14 O 1.42104 * 110.54231 * 68.37634 * 12 11 9 15 15 O 1.52195 * 104.45072 * 180.02562 * 12 11 9 16 16 C 1.35997 * 114.00070 * 75.00163 * 15 12 11 17 17 C 1.39147 * 120.07139 * 269.72886 * 16 15 12 18 18 O 1.35999 * 120.07663 * 359.97438 * 17 16 15 19 19 C 1.42893 * 117.00343 * 179.97438 * 18 17 16 20 20 C 1.38572 * 119.85377 * 179.72588 * 17 16 15 21 21 C 1.38238 * 119.99836 * 0.53843 * 20 17 16 22 22 C 1.38257 * 120.14599 * 359.73973 * 21 20 17 23 23 C 1.50703 * 119.92703 * 179.97438 * 22 21 20 24 24 O 1.42903 * 109.47336 * 120.01466 * 23 22 21 25 25 Si 1.86298 * 109.46933 * 0.02562 * 23 22 21 26 26 C 1.38237 * 120.14472 * 359.97438 * 22 21 20 27 27 C 1.53778 * 87.08035 * 334.56830 * 9 8 6 28 28 H 1.09000 * 109.47631 * 59.99519 * 1 2 3 29 29 H 1.09002 * 109.46889 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47303 * 299.99487 * 1 2 3 31 31 H 1.08998 * 109.47474 * 240.00607 * 2 1 3 32 32 H 1.09004 * 109.47569 * 119.99957 * 2 1 3 33 33 H 1.09004 * 113.61451 * 25.43157 * 8 6 4 34 34 H 1.08994 * 113.61477 * 254.52459 * 8 6 4 35 35 H 1.08996 * 109.47197 * 300.00200 * 11 9 8 36 36 H 1.09002 * 109.46852 * 60.00551 * 11 9 8 37 37 H 1.09003 * 109.47214 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47608 * 300.00989 * 19 18 17 39 39 H 1.09004 * 109.46951 * 60.00950 * 19 18 17 40 40 H 1.08003 * 120.00091 * 180.27888 * 20 17 16 41 41 H 1.07996 * 119.92512 * 179.70141 * 21 20 17 42 42 H 1.09001 * 109.46697 * 240.01757 * 23 22 21 43 43 H 0.96702 * 113.99869 * 300.00608 * 24 23 22 44 44 H 1.48497 * 110.00116 * 58.68505 * 25 23 22 45 45 H 1.48505 * 109.99905 * 180.02562 * 25 23 22 46 46 H 1.08002 * 120.00227 * 180.02562 * 26 22 21 47 47 H 1.08999 * 113.61111 * 139.98327 * 27 9 8 48 48 H 1.08999 * 113.61280 * 270.79710 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.4713 3.5822 0.7554 8 6 5.4582 2.9682 -0.0001 9 6 5.3562 4.1429 -0.9873 10 9 5.2830 5.3935 -0.3644 11 6 6.3997 4.0962 -2.1053 12 16 6.1790 5.5268 -3.1986 13 8 4.9621 5.4168 -3.9242 14 8 6.5228 6.7286 -2.5227 15 8 7.2618 5.3673 -4.2561 16 6 6.9973 4.4026 -5.1775 17 6 7.4228 3.0956 -4.9604 18 8 8.1044 2.7802 -3.8266 19 6 8.5094 1.4188 -3.6706 20 6 7.1459 2.1151 -5.8995 21 6 6.4581 2.4385 -7.0543 22 6 6.0405 3.7383 -7.2727 23 6 5.2916 4.0855 -8.5335 24 8 4.0030 4.6024 -8.1952 25 14 5.0922 2.5561 -9.5785 26 6 6.3083 4.7200 -6.3370 27 6 3.9861 3.5775 -1.3967 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.9127 2.0753 -0.4294 34 1 5.8894 3.2429 0.9625 35 1 7.3990 4.1221 -1.6710 36 1 6.2765 3.1776 -2.6791 37 1 9.0416 1.3039 -2.7263 38 1 7.6295 0.7755 -3.6719 39 1 9.1657 1.1383 -4.4944 40 1 7.4710 1.0990 -5.7313 41 1 6.2472 1.6744 -7.7877 42 1 5.8495 4.8372 -9.0920 43 1 3.4505 3.9855 -7.6958 44 1 4.3607 1.5123 -8.8166 45 1 4.3556 2.8853 -10.8252 46 1 5.9806 5.7345 -6.5098 47 1 3.2290 4.3441 -1.5617 48 1 4.0380 2.8523 -2.2088 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79710_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:33:54 Heat of formation + Delta-G solvation = -233.215672 kcal Electronic energy + Delta-G solvation = -38926.665658 eV Core-core repulsion = 33572.309699 eV Total energy + Delta-G solvation = -5354.355959 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -49.15928 -42.63388 -41.83868 -40.39994 -39.50909 -39.37648 -38.22170 -37.49511 -37.31766 -37.11167 -32.90794 -32.22697 -32.03686 -31.91642 -29.02212 -27.42392 -26.95344 -26.49038 -24.95263 -24.07233 -23.18278 -22.29428 -21.45673 -20.93227 -19.88469 -19.30763 -19.21416 -18.83287 -18.60142 -18.09177 -17.80883 -17.62842 -17.58810 -17.16689 -17.07417 -16.61252 -16.34079 -16.19437 -16.12319 -16.03109 -15.57486 -15.51896 -15.33726 -14.81543 -14.71124 -14.62307 -14.35206 -14.27432 -14.09297 -13.84310 -13.74402 -13.60953 -13.40455 -13.24608 -13.18964 -13.14594 -13.08192 -13.03094 -12.94077 -12.73535 -12.62658 -12.51687 -12.38613 -12.34880 -11.91338 -11.82062 -11.61234 -11.51877 -11.38968 -10.76988 -10.34479 -9.66025 -5.09450 -1.12952 -0.23673 -0.13906 0.93472 1.01221 1.15783 1.46036 1.49950 1.67325 1.86633 2.08158 2.44861 2.56993 2.69062 2.81723 2.91077 3.06942 3.20303 3.22366 3.30566 3.31648 3.45937 3.64713 3.71633 3.78860 3.83342 3.86931 3.90052 3.91519 3.92929 4.01416 4.20508 4.22352 4.24998 4.27093 4.29724 4.33001 4.40846 4.51884 4.55832 4.57598 4.64245 4.65852 4.73464 4.75159 4.91267 4.95532 5.01353 5.23266 5.35298 5.78859 6.33885 6.61622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.476 3.524 5 O -0.504 6.504 6 C -0.110 4.110 7 H 0.138 0.862 8 C -0.119 4.119 9 C 0.102 3.898 10 F -0.171 7.171 11 C -0.659 4.659 12 S 2.591 3.409 13 O -0.941 6.941 14 O -0.910 6.910 15 O -0.648 6.648 16 C 0.032 3.968 17 C 0.125 3.875 18 O -0.312 6.312 19 C 0.018 3.982 20 C -0.187 4.187 21 C -0.055 4.055 22 C -0.138 4.138 23 C -0.074 4.074 24 O -0.524 6.524 25 Si 0.685 3.315 26 C -0.022 4.022 27 C -0.143 4.143 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.379 0.621 44 H -0.257 1.257 45 H -0.253 1.253 46 H 0.153 0.847 47 H 0.110 0.890 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 -8.507 -2.157 8.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.319 3.681 5 O -0.392 6.392 6 C -0.129 4.129 7 H 0.156 0.844 8 C -0.158 4.158 9 C 0.082 3.918 10 F -0.151 7.151 11 C -0.784 4.784 12 S 2.685 3.315 13 O -0.940 6.940 14 O -0.908 6.908 15 O -0.606 6.606 16 C -0.011 4.011 17 C 0.077 3.923 18 O -0.225 6.225 19 C -0.077 4.077 20 C -0.206 4.206 21 C -0.074 4.074 22 C -0.139 4.139 23 C -0.183 4.183 24 O -0.331 6.331 25 Si 0.585 3.415 26 C -0.042 4.042 27 C -0.180 4.180 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.169 0.831 41 H 0.161 0.839 42 H 0.142 0.858 43 H 0.227 0.773 44 H -0.182 1.182 45 H -0.178 1.178 46 H 0.171 0.829 47 H 0.128 0.872 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.125 -7.975 -2.900 8.560 hybrid contribution -0.514 -0.559 1.394 1.588 sum 0.611 -8.534 -1.506 8.687 Atomic orbital electron populations 1.21830 0.92196 1.03323 1.03808 1.23118 0.95749 0.79642 1.02768 1.86528 1.24051 1.32925 1.83473 1.23236 0.80857 0.91836 0.72193 1.90677 1.60550 1.42749 1.45185 1.22501 0.97283 0.92022 1.01100 0.84393 1.23565 0.93594 0.97784 1.00834 1.21211 0.95445 0.82099 0.93036 1.93014 1.97013 1.41551 1.83544 1.31280 1.09255 1.24559 1.13349 1.05756 0.73868 0.76520 0.75375 1.93660 1.46018 1.86938 1.67361 1.93682 1.82280 1.40480 1.74354 1.85783 1.67479 1.58849 1.48525 1.17318 1.08396 0.82909 0.92474 1.19152 0.93082 0.92028 0.88006 1.86178 1.68989 1.31135 1.36233 1.23322 1.00572 0.79426 1.04350 1.21152 1.04875 0.99534 0.95012 1.21091 0.94486 0.95739 0.96066 1.20186 1.02495 0.93052 0.98139 1.25067 0.85169 1.10755 0.97355 1.86641 1.25618 1.44122 1.76678 0.95221 0.90712 0.75849 0.79674 1.21061 0.91992 1.01520 0.89631 1.23752 0.96256 1.01741 0.96295 0.91279 0.89940 0.91264 0.91076 0.90978 0.86206 0.88019 0.82377 0.82907 0.87099 0.91732 0.91408 0.83123 0.83933 0.85807 0.77329 1.18207 1.17760 0.82907 0.87197 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.31 10.29 37.15 0.38 0.69 16 2 C 0.06 -0.02 6.19 37.15 0.23 0.21 16 3 O -0.35 -0.41 10.22 -39.25 -0.40 -0.81 16 4 C 0.48 0.58 7.48 36.01 0.27 0.84 16 5 O -0.50 -1.66 15.65 -18.75 -0.29 -1.96 16 6 C -0.11 0.08 4.24 -90.96 -0.39 -0.31 16 7 H 0.14 -0.28 8.14 -51.93 -0.42 -0.70 16 8 C -0.12 0.14 6.86 -25.91 -0.18 -0.03 16 9 C 0.10 0.02 1.62 -89.81 -0.15 -0.12 16 10 F -0.17 -0.47 16.28 2.25 0.04 -0.43 16 11 C -0.66 0.23 4.24 37.16 0.16 0.39 16 12 S 2.59 8.86 4.89 -107.50 -0.53 8.33 16 13 O -0.94 -4.08 16.26 -67.04 -1.09 -5.17 16 14 O -0.91 -6.50 17.54 -67.03 -1.18 -7.68 16 15 O -0.65 -2.05 9.84 -54.23 -0.53 -2.58 16 16 C 0.03 0.05 4.80 -39.12 -0.19 -0.14 16 17 C 0.13 -0.08 5.83 -39.12 -0.23 -0.31 16 18 O -0.31 0.53 7.54 -34.24 -0.26 0.27 16 19 C 0.02 -0.09 9.81 101.05 0.99 0.90 16 20 C -0.19 0.53 9.04 -39.46 -0.36 0.18 16 21 C -0.06 0.16 8.66 -39.57 -0.34 -0.19 16 22 C -0.14 0.14 5.39 -104.61 -0.56 -0.43 16 23 C -0.07 0.10 2.82 36.01 0.10 0.20 16 24 O -0.52 -0.35 12.77 -35.23 -0.45 -0.80 16 25 Si 0.69 -1.81 29.78 -169.99 -5.06 -6.87 16 26 C -0.02 -0.03 8.60 -39.46 -0.34 -0.36 16 27 C -0.14 0.10 7.07 -25.92 -0.18 -0.08 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 30 H 0.07 -0.13 8.14 -51.92 -0.42 -0.55 16 31 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 32 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 33 H 0.12 -0.21 7.39 -51.93 -0.38 -0.59 16 34 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 35 H 0.16 -0.33 8.11 -51.93 -0.42 -0.75 16 36 H 0.15 -0.38 5.84 -51.92 -0.30 -0.68 16 37 H 0.11 -0.68 8.14 -51.93 -0.42 -1.10 16 38 H 0.06 -0.40 7.65 -51.93 -0.40 -0.79 16 39 H 0.07 -0.40 7.67 -51.93 -0.40 -0.80 16 40 H 0.15 -0.86 6.30 -52.48 -0.33 -1.19 16 41 H 0.14 -0.74 4.87 -52.49 -0.26 -1.00 16 42 H 0.12 -0.28 7.96 -51.93 -0.41 -0.70 16 43 H 0.38 -0.78 8.70 45.56 0.40 -0.39 16 44 H -0.26 0.28 7.11 56.52 0.40 0.69 16 45 H -0.25 -0.26 7.11 56.52 0.40 0.15 16 46 H 0.15 0.20 8.06 -52.49 -0.42 -0.22 16 47 H 0.11 -0.11 8.14 -51.93 -0.42 -0.53 16 48 H 0.11 -0.22 7.92 -51.93 -0.41 -0.63 16 LS Contribution 411.66 15.07 6.20 6.20 Total: 0.00 -11.96 411.66 -10.67 -22.63 By element: Atomic # 1 Polarization: -6.25 SS G_CDS: -6.34 Total: -12.59 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.78 Total: 1.45 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -4.20 Total: -18.73 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.04 Total: -0.43 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: -5.06 Total: -6.87 kcal Atomic # 16 Polarization: 8.86 SS G_CDS: -0.53 Total: 8.33 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -11.96 -10.67 -22.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.582 kcal (2) G-P(sol) polarization free energy of solvation -11.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds