Wall clock time and date at job start Tue Mar 9 2021 13:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47028 * 2 1 4 4 C 1.34226 * 117.00062 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00192 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00175 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.90925 * 48.74115 * 6 4 3 8 8 C 1.53784 * 113.61605 * 179.97438 * 6 4 3 9 9 C 1.53787 * 87.07923 * 139.97671 * 8 6 4 10 10 F 1.39902 * 113.60965 * 89.11787 * 9 8 6 11 11 C 1.53001 * 113.61313 * 219.93272 * 9 8 6 12 12 S 1.81395 * 109.47101 * 180.02562 * 11 9 8 13 13 O 1.42102 * 110.54326 * 291.62955 * 12 11 9 14 14 O 1.42104 * 110.54231 * 68.37634 * 12 11 9 15 15 O 1.52195 * 104.45072 * 180.02562 * 12 11 9 16 16 C 1.35997 * 114.00070 * 75.00163 * 15 12 11 17 17 C 1.39147 * 120.07139 * 269.72886 * 16 15 12 18 18 O 1.35999 * 120.07663 * 359.97438 * 17 16 15 19 19 C 1.42893 * 117.00343 * 179.97438 * 18 17 16 20 20 C 1.38572 * 119.85377 * 179.72588 * 17 16 15 21 21 C 1.38238 * 119.99836 * 0.53843 * 20 17 16 22 22 C 1.38257 * 120.14599 * 359.73973 * 21 20 17 23 23 C 1.50703 * 119.92703 * 179.97438 * 22 21 20 24 24 O 1.42903 * 109.47336 * 120.01466 * 23 22 21 25 25 Si 1.86298 * 109.46933 * 0.02562 * 23 22 21 26 26 C 1.38237 * 120.14472 * 359.97438 * 22 21 20 27 27 C 1.53778 * 87.08035 * 334.56830 * 9 8 6 28 28 H 1.09000 * 109.47631 * 59.99519 * 1 2 3 29 29 H 1.09002 * 109.46889 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47303 * 299.99487 * 1 2 3 31 31 H 1.08998 * 109.47474 * 240.00607 * 2 1 3 32 32 H 1.09004 * 109.47569 * 119.99957 * 2 1 3 33 33 H 1.09004 * 113.61451 * 25.43157 * 8 6 4 34 34 H 1.08994 * 113.61477 * 254.52459 * 8 6 4 35 35 H 1.08996 * 109.47197 * 300.00200 * 11 9 8 36 36 H 1.09002 * 109.46852 * 60.00551 * 11 9 8 37 37 H 1.09003 * 109.47214 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47608 * 300.00989 * 19 18 17 39 39 H 1.09004 * 109.46951 * 60.00950 * 19 18 17 40 40 H 1.08003 * 120.00091 * 180.27888 * 20 17 16 41 41 H 1.07996 * 119.92512 * 179.70141 * 21 20 17 42 42 H 1.09001 * 109.46697 * 240.01757 * 23 22 21 43 43 H 0.96702 * 113.99869 * 300.00608 * 24 23 22 44 44 H 1.48497 * 110.00116 * 58.68505 * 25 23 22 45 45 H 1.48505 * 109.99905 * 180.02562 * 25 23 22 46 46 H 1.08002 * 120.00227 * 180.02562 * 26 22 21 47 47 H 1.08999 * 113.61111 * 139.98327 * 27 9 8 48 48 H 1.08999 * 113.61280 * 270.79710 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.4713 3.5822 0.7554 8 6 5.4582 2.9682 -0.0001 9 6 5.3562 4.1429 -0.9873 10 9 5.2830 5.3935 -0.3644 11 6 6.3997 4.0962 -2.1053 12 16 6.1790 5.5268 -3.1986 13 8 4.9621 5.4168 -3.9242 14 8 6.5228 6.7286 -2.5227 15 8 7.2618 5.3673 -4.2561 16 6 6.9973 4.4026 -5.1775 17 6 7.4228 3.0956 -4.9604 18 8 8.1044 2.7802 -3.8266 19 6 8.5094 1.4188 -3.6706 20 6 7.1459 2.1151 -5.8995 21 6 6.4581 2.4385 -7.0543 22 6 6.0405 3.7383 -7.2727 23 6 5.2916 4.0855 -8.5335 24 8 4.0030 4.6024 -8.1952 25 14 5.0922 2.5561 -9.5785 26 6 6.3083 4.7200 -6.3370 27 6 3.9861 3.5775 -1.3967 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.9127 2.0753 -0.4294 34 1 5.8894 3.2429 0.9625 35 1 7.3990 4.1221 -1.6710 36 1 6.2765 3.1776 -2.6791 37 1 9.0416 1.3039 -2.7263 38 1 7.6295 0.7755 -3.6719 39 1 9.1657 1.1383 -4.4944 40 1 7.4710 1.0990 -5.7313 41 1 6.2472 1.6744 -7.7877 42 1 5.8495 4.8372 -9.0920 43 1 3.4505 3.9855 -7.6958 44 1 4.3607 1.5123 -8.8166 45 1 4.3556 2.8853 -10.8252 46 1 5.9806 5.7345 -6.5098 47 1 3.2290 4.3441 -1.5617 48 1 4.0380 2.8523 -2.2088 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79710_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:33:53 Heat of formation + Delta-G solvation = -235.549483 kcal Electronic energy + Delta-G solvation = -38926.766860 eV Core-core repulsion = 33572.309699 eV Total energy + Delta-G solvation = -5354.457161 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.26214 -42.60440 -41.88351 -40.34299 -39.41475 -39.32079 -38.52053 -37.57102 -37.41948 -37.25059 -32.84093 -32.12172 -31.94774 -31.86707 -28.67579 -27.33698 -26.94656 -26.32985 -24.92911 -24.00005 -23.08078 -22.30572 -21.50490 -20.91178 -19.87850 -19.35230 -19.26275 -18.78059 -18.68489 -18.11461 -17.82400 -17.64525 -17.54374 -17.14508 -16.88545 -16.62224 -16.29921 -16.18878 -16.14153 -16.01811 -15.55140 -15.43345 -15.27813 -14.72595 -14.65001 -14.59034 -14.37734 -14.26497 -14.13470 -13.70715 -13.67753 -13.55365 -13.52560 -13.40793 -13.32396 -13.10991 -13.09352 -12.98199 -12.95644 -12.55409 -12.49694 -12.45328 -12.26566 -12.11071 -11.90903 -11.70577 -11.59326 -11.53718 -11.43536 -10.67950 -10.25814 -9.51865 -4.90291 -1.26794 -0.17284 -0.02266 0.83311 0.95647 1.30598 1.52759 1.62619 1.91127 2.02217 2.20718 2.31216 2.60112 2.68351 2.77762 2.85225 3.13190 3.21971 3.34897 3.43436 3.52258 3.60002 3.69471 3.80165 3.93297 3.95716 3.98461 4.01178 4.09221 4.29593 4.30072 4.31612 4.36013 4.37812 4.39195 4.43699 4.54225 4.59144 4.70497 4.72019 4.76271 4.79287 4.81689 4.87234 4.92808 4.98842 5.10326 5.13544 5.37256 5.37647 6.02719 6.49728 6.56909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.479 3.521 5 O -0.526 6.526 6 C -0.109 4.109 7 H 0.148 0.852 8 C -0.110 4.110 9 C 0.089 3.911 10 F -0.189 7.189 11 C -0.637 4.637 12 S 2.583 3.417 13 O -0.963 6.963 14 O -0.963 6.963 15 O -0.657 6.657 16 C -0.002 4.002 17 C 0.127 3.873 18 O -0.324 6.324 19 C 0.003 3.997 20 C -0.177 4.177 21 C -0.046 4.046 22 C -0.140 4.140 23 C -0.094 4.094 24 O -0.551 6.551 25 Si 0.785 3.215 26 C -0.046 4.046 27 C -0.147 4.147 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.189 0.811 41 H 0.174 0.826 42 H 0.125 0.875 43 H 0.388 0.612 44 H -0.266 1.266 45 H -0.307 1.307 46 H 0.133 0.867 47 H 0.107 0.893 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -11.910 -2.152 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.323 3.677 5 O -0.415 6.415 6 C -0.128 4.128 7 H 0.166 0.834 8 C -0.148 4.148 9 C 0.069 3.931 10 F -0.170 7.170 11 C -0.766 4.766 12 S 2.682 3.318 13 O -0.961 6.961 14 O -0.962 6.962 15 O -0.617 6.617 16 C -0.045 4.045 17 C 0.078 3.922 18 O -0.237 6.237 19 C -0.090 4.090 20 C -0.195 4.195 21 C -0.064 4.064 22 C -0.141 4.141 23 C -0.201 4.201 24 O -0.359 6.359 25 Si 0.688 3.312 26 C -0.066 4.066 27 C -0.184 4.184 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.196 0.804 36 H 0.196 0.804 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.206 0.794 41 H 0.191 0.809 42 H 0.143 0.857 43 H 0.237 0.763 44 H -0.192 1.192 45 H -0.235 1.235 46 H 0.151 0.849 47 H 0.126 0.874 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.760 -11.327 -2.881 11.819 hybrid contribution -0.721 0.425 1.349 1.588 sum 1.039 -10.902 -1.532 11.058 Atomic orbital electron populations 1.21842 0.91029 1.04281 1.03640 1.23293 0.96728 0.79047 1.02848 1.86536 1.24136 1.33844 1.83267 1.23512 0.80696 0.92156 0.71363 1.90659 1.60923 1.43566 1.46379 1.22573 0.97720 0.91160 1.01329 0.83393 1.23585 0.93262 0.97133 1.00852 1.21480 0.96137 0.81850 0.93641 1.92980 1.97123 1.42943 1.83914 1.31134 1.10395 1.22792 1.12285 1.05747 0.73461 0.77049 0.75519 1.93615 1.46981 1.87469 1.68061 1.93609 1.82977 1.44168 1.75398 1.85748 1.66900 1.59997 1.49030 1.17692 1.10391 0.83814 0.92570 1.19226 0.92775 0.91308 0.88878 1.86172 1.68614 1.33259 1.35694 1.23684 1.01798 0.77967 1.05588 1.21594 1.03464 1.00585 0.93845 1.21430 0.93120 0.95249 0.96622 1.20251 1.02627 0.93571 0.97664 1.25508 0.84451 1.12340 0.97829 1.86606 1.26681 1.45538 1.77074 0.94198 0.88582 0.73351 0.75094 1.21078 0.93271 1.01468 0.90787 1.23856 0.95720 1.01955 0.96875 0.91364 0.88427 0.91472 0.90819 0.91095 0.85083 0.87069 0.80440 0.80364 0.85980 0.89933 0.90088 0.79417 0.80948 0.85742 0.76301 1.19200 1.23530 0.84901 0.87433 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.69 10.29 71.98 0.74 1.43 16 2 C 0.05 -0.06 6.19 71.98 0.45 0.39 16 3 O -0.36 -0.73 10.22 -51.38 -0.53 -1.25 16 4 C 0.48 0.87 7.48 71.24 0.53 1.40 16 5 O -0.53 -3.00 15.65 21.96 0.34 -2.66 16 6 C -0.11 0.22 4.24 -11.01 -0.05 0.17 16 7 H 0.15 -0.64 8.14 -2.39 -0.02 -0.66 16 8 C -0.11 0.39 6.86 31.12 0.21 0.60 16 9 C 0.09 0.04 1.62 -10.27 -0.02 0.02 16 10 F -0.19 -1.27 16.28 44.97 0.73 -0.54 16 11 C -0.64 0.49 4.24 71.98 0.31 0.80 16 12 S 2.58 23.60 4.89 -56.49 -0.28 23.33 16 13 O -0.96 -11.01 16.26 -118.57 -1.93 -12.94 16 14 O -0.96 -17.09 17.54 -118.57 -2.08 -19.17 16 15 O -0.66 -5.74 9.84 -60.54 -0.60 -6.34 16 16 C 0.00 -0.01 4.80 22.57 0.11 0.10 16 17 C 0.13 -0.29 5.83 22.57 0.13 -0.16 16 18 O -0.32 1.63 7.54 -79.68 -0.60 1.03 16 19 C 0.00 -0.04 9.81 113.37 1.11 1.07 16 20 C -0.18 1.48 9.04 22.35 0.20 1.69 16 21 C -0.05 0.35 8.66 22.27 0.19 0.55 16 22 C -0.14 0.25 5.39 -19.86 -0.11 0.14 16 23 C -0.09 0.20 2.82 71.24 0.20 0.40 16 24 O -0.55 -1.62 12.77 -148.98 -1.90 -3.52 16 25 Si 0.78 -4.87 29.78 68.60 2.04 -2.82 16 26 C -0.05 -0.20 8.60 22.35 0.19 -0.01 16 27 C -0.15 0.21 7.07 31.12 0.22 0.43 16 28 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.07 -0.13 8.13 -2.39 -0.02 -0.15 16 32 H 0.07 -0.07 8.13 -2.39 -0.02 -0.09 16 33 H 0.13 -0.73 7.39 -2.39 -0.02 -0.75 16 34 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.18 -0.84 8.11 -2.39 -0.02 -0.86 16 36 H 0.18 -1.11 5.84 -2.39 -0.01 -1.12 16 37 H 0.12 -1.83 8.14 -2.39 -0.02 -1.85 16 38 H 0.08 -1.34 7.65 -2.39 -0.02 -1.36 16 39 H 0.08 -1.24 7.67 -2.39 -0.02 -1.25 16 40 H 0.19 -3.03 6.30 -2.91 -0.02 -3.05 16 41 H 0.17 -2.41 4.87 -2.91 -0.01 -2.43 16 42 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 43 H 0.39 -1.12 8.70 -74.06 -0.64 -1.77 16 44 H -0.27 1.22 7.11 99.48 0.71 1.92 16 45 H -0.31 -0.89 7.11 99.48 0.71 -0.18 16 46 H 0.13 0.91 8.06 -2.91 -0.02 0.89 16 47 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H 0.13 -0.58 7.92 -2.39 -0.02 -0.60 16 Total: 0.00 -31.72 411.66 0.05 -31.66 By element: Atomic # 1 Polarization: -16.21 SS G_CDS: 0.41 Total: -15.80 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.43 Total: 9.02 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -7.29 Total: -44.85 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.73 Total: -0.54 kcal Atomic # 14 Polarization: -4.87 SS G_CDS: 2.04 Total: -2.82 kcal Atomic # 16 Polarization: 23.60 SS G_CDS: -0.28 Total: 23.33 kcal Total: -31.72 0.05 -31.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.885 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds