Wall clock time and date at job start Tue Mar 9 2021 13:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35987 * 117.00096 * 2 1 4 4 C 1.38521 * 120.07590 * 0.27687 * 3 2 1 5 5 C 1.38287 * 120.00206 * 179.97438 * 4 3 2 6 6 C 1.38204 * 120.14605 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.92808 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47148 * 245.00567 * 7 6 5 9 9 Si 1.86303 * 109.46740 * 5.00358 * 7 6 5 10 10 H 1.48492 * 109.47212 * 299.99790 * 9 7 6 11 11 H 1.48495 * 109.47252 * 59.99971 * 9 7 6 12 12 H 1.48506 * 109.46739 * 180.02562 * 9 7 6 13 13 C 1.38287 * 120.14574 * 359.96410 * 6 5 4 14 14 C 1.38525 * 120.00239 * 359.78427 * 13 6 5 15 15 O 1.35984 * 120.07675 * 180.02562 * 14 13 6 16 16 S 1.52205 * 113.99743 * 89.99679 * 15 14 13 17 17 O 1.42100 * 106.39909 * 188.53868 * 16 15 14 18 18 O 1.42092 * 106.40701 * 321.46506 * 16 15 14 19 19 C 1.76200 * 107.21505 * 75.00397 * 16 15 14 20 20 C 1.38234 * 120.00238 * 270.26989 * 19 16 15 21 21 C 1.38234 * 120.00331 * 180.02562 * 20 19 16 22 22 C 1.38235 * 120.00112 * 359.97438 * 21 20 19 23 Xx 1.80991 * 120.00065 * 179.97438 * 22 21 20 24 23 F 6.69232 * 58.71342 * 130.01194 * 2 1 3 25 24 F 1.60993 * 90.00232 * 135.00266 * 23 22 21 26 25 F 1.61003 * 90.00005 * 315.00006 * 23 22 21 27 26 F 1.61000 * 90.00125 * 225.00306 * 23 22 21 28 27 F 1.60993 * 90.00112 * 44.99946 * 23 22 21 29 28 C 1.38236 * 119.99763 * 359.95523 * 22 21 20 30 29 C 1.38231 * 120.00121 * 359.86152 * 29 22 21 31 30 H 1.09001 * 109.47103 * 300.00410 * 1 2 3 32 31 H 1.09004 * 109.47054 * 59.99914 * 1 2 3 33 32 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 34 33 H 1.08003 * 119.99996 * 359.95679 * 4 3 2 35 34 H 1.08003 * 119.92537 * 180.02562 * 5 4 3 36 35 H 1.08996 * 109.46885 * 125.00261 * 7 6 5 37 36 H 0.96698 * 113.99743 * 179.97438 * 8 7 6 38 37 H 1.07999 * 119.99553 * 179.97438 * 13 6 5 39 38 H 1.08005 * 119.99633 * 359.97438 * 20 19 16 40 39 H 1.08003 * 119.99642 * 179.97438 * 21 20 19 41 40 H 1.08003 * 120.00102 * 180.02562 * 29 22 21 42 41 H 1.08004 * 120.00245 * 179.97438 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2936 2.3744 0.0058 5 6 1.9230 3.6057 0.0063 6 6 3.3030 3.6798 0.0005 7 6 3.9839 5.0242 0.0006 8 8 4.7017 5.1947 -1.2233 9 14 2.7039 6.3683 0.1622 10 1 1.7590 6.2920 -0.9807 11 1 1.9580 6.1912 1.4339 12 1 3.3748 7.6932 0.1616 13 6 4.0606 2.5229 -0.0050 14 6 3.4364 1.2862 -0.0003 15 8 4.1799 0.1476 -0.0053 16 16 4.5282 -0.3703 1.3829 17 8 5.4589 -1.4275 1.1948 18 8 4.8016 0.7731 2.1810 19 6 3.0700 -1.1035 2.0470 20 6 2.1804 -0.3358 2.7750 21 6 1.0367 -0.9110 3.2964 22 6 0.7823 -2.2539 3.0895 23 9 -2.0464 -3.6771 4.3803 24 9 -0.9771 -3.7566 2.3722 25 9 -0.4525 -2.2579 5.1735 26 9 0.1511 -4.2648 4.2835 27 9 -1.5807 -1.7497 3.2622 28 6 1.6712 -3.0213 2.3602 29 6 2.8130 -2.4452 1.8356 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2150 2.3193 0.0096 34 1 1.3348 4.5115 0.0113 35 1 4.6775 5.0802 0.8395 36 1 5.1653 6.0404 -1.2928 37 1 5.1388 2.5835 -0.0100 38 1 2.3793 0.7134 2.9371 39 1 0.3419 -0.3112 3.8656 40 1 1.4724 -4.0704 2.1981 41 1 3.5078 -3.0449 1.2661 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79710_8643202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:08 Heat of formation + Delta-G solvation = 274.645421 kcal Electronic energy + Delta-G solvation = -40584.793529 eV Core-core repulsion = 34309.428060 eV Total energy + Delta-G solvation = -6275.365469 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 418.056 amu Computer time = 37.05 seconds Orbital eigenvalues (eV) -44.42961 -44.31402 -44.20122 -44.13846 -43.66910 -42.62761 -41.27386 -40.33480 -39.18781 -38.72936 -37.39906 -37.15244 -33.21501 -33.03637 -32.11499 -31.91945 -28.74474 -26.25171 -25.01260 -24.79947 -24.71516 -22.93483 -21.57885 -20.38748 -19.64634 -19.12117 -18.61883 -18.46629 -17.97483 -17.48155 -16.93113 -16.77740 -16.61082 -16.42557 -16.06206 -15.80634 -15.64700 -15.53269 -15.51220 -15.27573 -15.18644 -14.82755 -14.70872 -14.58843 -14.45569 -14.35123 -14.20959 -14.18510 -14.06938 -14.01644 -13.95705 -13.90266 -13.75163 -13.65243 -13.57554 -13.52107 -13.41446 -13.17652 -13.04831 -12.70132 -12.50269 -12.42633 -12.31918 -12.13427 -11.93969 -11.92936 -11.69512 -11.61693 -11.41930 -11.05452 -10.30242 -10.25802 -9.48021 -5.31778 -4.86016 -3.47173 -1.52864 -1.17606 -0.73428 -0.14616 0.00664 0.91283 1.21727 1.42627 1.52354 1.59351 1.87747 1.97831 2.16857 2.26323 2.40804 2.60441 2.69130 3.18522 3.27058 3.36569 3.49635 3.57234 3.71402 3.75767 3.85492 3.96523 3.98035 4.08153 4.18096 4.22517 4.30188 4.31523 4.38229 4.49815 4.63048 4.67874 4.74507 4.77623 4.91536 5.17685 5.36611 5.98881 6.85463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.315 6.315 3 C 0.133 3.867 4 C -0.180 4.180 5 C -0.058 4.058 6 C -0.105 4.105 7 C -0.086 4.086 8 O -0.564 6.564 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.244 1.244 12 H -0.262 1.262 13 C -0.034 4.034 14 C 0.000 4.000 15 O -0.637 6.637 16 S 2.690 3.310 17 O -0.938 6.938 18 O -0.945 6.945 19 C -0.682 4.682 20 C 0.053 3.947 21 C -0.127 4.127 22 C 0.393 3.607 23 F -0.201 7.201 24 F -0.159 7.159 25 F -0.166 7.166 26 F -0.169 7.169 27 F -0.154 7.154 28 C -0.127 4.127 29 C 0.063 3.937 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.179 0.821 34 H 0.152 0.848 35 H 0.101 0.899 36 H 0.400 0.600 37 H 0.154 0.846 38 H 0.217 0.783 39 H 0.210 0.790 40 H 0.205 0.795 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 10.087 -4.671 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.228 6.228 3 C 0.084 3.916 4 C -0.199 4.199 5 C -0.077 4.077 6 C -0.105 4.105 7 C -0.196 4.196 8 O -0.374 6.374 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.168 1.168 12 H -0.187 1.187 13 C -0.055 4.055 14 C -0.042 4.042 15 O -0.597 6.597 16 S 2.780 3.220 17 O -0.937 6.937 18 O -0.944 6.944 19 C -0.764 4.764 20 C 0.035 3.965 21 C -0.144 4.144 22 C 0.388 3.612 23 F -0.201 7.201 24 F -0.158 7.158 25 F -0.164 7.164 26 F -0.167 7.167 27 F -0.153 7.153 28 C -0.145 4.145 29 C 0.045 3.955 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.196 0.804 34 H 0.169 0.831 35 H 0.119 0.881 36 H 0.251 0.749 37 H 0.172 0.828 38 H 0.234 0.766 39 H 0.227 0.773 40 H 0.222 0.778 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.875 10.004 -4.913 11.800 hybrid contribution -1.411 -1.054 0.775 1.924 sum 2.464 8.950 -4.138 10.164 Atomic orbital electron populations 1.23594 0.75617 1.05895 1.04025 1.86163 1.23828 1.25109 1.87678 1.19157 0.89660 0.86887 0.95848 1.21448 1.02286 0.89772 1.06351 1.21387 0.93560 0.99066 0.93661 1.19338 0.93368 0.94117 1.03727 1.24820 1.03794 1.00138 0.90812 1.86454 1.69747 1.44267 1.36883 0.85386 0.77886 0.76486 0.80775 1.18628 1.16766 1.18657 1.21153 1.02155 0.89031 0.93120 1.17501 0.86211 0.82322 1.18160 1.85770 1.72387 1.46249 1.55267 1.02512 0.73176 0.73790 0.72472 1.93665 1.58417 1.57274 1.84319 1.93658 1.82925 1.48472 1.69341 1.31843 1.24131 1.06131 1.14280 1.21574 0.85028 1.01880 0.87968 1.22232 0.99417 0.89770 1.02997 1.27982 0.53977 0.85858 0.93375 2.00000 1.79670 1.96222 1.44184 1.99920 1.95837 1.98111 1.21943 1.99922 1.70425 1.98648 1.47431 1.99922 1.56105 1.88871 1.71827 1.99918 1.88292 1.75997 1.51093 1.22268 0.89556 1.06181 0.96446 1.21554 0.90512 0.92010 0.91391 0.89912 0.90190 0.87340 0.80380 0.83054 0.88085 0.74922 0.82840 0.76644 0.77326 0.77787 0.76432 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 672. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.31 2.83 7.77 -79.55 -0.62 2.21 16 3 C 0.13 -0.98 5.67 22.57 0.13 -0.85 16 4 C -0.18 1.88 9.04 22.35 0.20 2.08 16 5 C -0.06 0.50 8.66 22.27 0.19 0.69 16 6 C -0.10 0.57 5.38 -19.86 -0.11 0.47 16 7 C -0.09 0.68 2.79 71.24 0.20 0.87 16 8 O -0.56 3.28 12.81 -148.98 -1.91 1.37 16 9 Si 0.97 -8.14 25.13 68.60 1.72 -6.41 16 10 H -0.26 1.54 7.04 99.48 0.70 2.24 16 11 H -0.24 2.11 7.11 99.48 0.71 2.82 16 12 H -0.26 1.73 7.11 99.48 0.71 2.44 16 13 C -0.03 0.11 8.82 22.35 0.20 0.31 16 14 C 0.00 0.00 4.80 22.57 0.11 0.11 16 15 O -0.64 1.69 9.94 -60.52 -0.60 1.09 16 16 S 2.69 -9.95 5.42 -56.49 -0.31 -10.25 16 17 O -0.94 -1.78 17.27 -118.78 -2.05 -3.83 16 18 O -0.95 1.63 15.61 -118.78 -1.85 -0.23 16 19 C -0.68 6.25 4.24 22.27 0.09 6.34 16 20 C 0.05 -0.64 7.69 22.27 0.17 -0.47 16 21 C -0.13 1.20 8.62 22.27 0.19 1.39 16 22 C 0.39 -1.30 4.82 22.27 0.11 -1.19 16 23 F -0.20 -4.49 16.66 44.97 0.75 -3.74 16 24 F -0.16 -1.73 15.31 44.97 0.69 -1.04 16 25 F -0.17 -2.00 15.31 44.97 0.69 -1.31 16 26 F -0.17 -2.19 15.31 44.97 0.69 -1.50 16 27 F -0.15 -1.40 15.31 44.97 0.69 -0.71 16 28 C -0.13 1.03 8.62 22.27 0.19 1.23 16 29 C 0.06 -0.70 9.52 22.27 0.21 -0.49 16 30 H 0.08 -1.34 7.65 -2.39 -0.02 -1.36 16 31 H 0.08 -1.14 7.68 -2.38 -0.02 -1.16 16 32 H 0.11 -1.34 8.14 -2.39 -0.02 -1.36 16 33 H 0.18 -2.90 6.30 -2.91 -0.02 -2.91 16 34 H 0.15 -1.77 4.85 -2.91 -0.01 -1.78 16 35 H 0.10 -1.15 7.96 -2.39 -0.02 -1.17 16 36 H 0.40 -5.61 8.74 -74.06 -0.65 -6.25 16 37 H 0.15 -0.64 8.06 -2.91 -0.02 -0.67 16 38 H 0.22 -3.74 7.62 -2.91 -0.02 -3.77 16 39 H 0.21 -2.59 7.40 -2.91 -0.02 -2.61 16 40 H 0.21 -2.01 7.40 -2.91 -0.02 -2.03 16 41 H 0.22 -3.46 7.62 -2.91 -0.02 -3.48 16 Total: 0.00 -35.98 381.03 2.14 -33.84 By element: Atomic # 1 Polarization: -22.31 SS G_CDS: 1.25 Total: -21.06 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 3.00 Total: 11.57 kcal Atomic # 8 Polarization: 7.65 SS G_CDS: -7.03 Total: 0.61 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 3.50 Total: -8.30 kcal Atomic # 14 Polarization: -8.14 SS G_CDS: 1.72 Total: -6.41 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -0.31 Total: -10.25 kcal Total: -35.98 2.14 -33.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_8643202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 308.486 kcal (2) G-P(sol) polarization free energy of solvation -35.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 272.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 274.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 37.05 seconds