Wall clock time and date at job start Tue Mar 9 2021 13:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45195 * 109.47124 * 2 1 4 4 C 1.34232 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99791 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99882 * 179.97438 * 4 3 2 7 7 H 1.09002 * 112.85178 * 309.66385 * 6 4 3 8 8 C 1.53785 * 113.69000 * 80.93543 * 6 4 3 9 9 C 1.53777 * 87.08241 * 89.12299 * 8 6 4 10 10 F 1.39895 * 113.61770 * 270.88672 * 9 8 6 11 11 C 1.52998 * 113.68937 * 139.98701 * 9 8 6 12 12 S 1.81398 * 109.46738 * 82.46796 * 11 9 8 13 13 O 1.42101 * 110.54518 * 291.62117 * 12 11 9 14 14 O 1.42100 * 110.54420 * 68.37349 * 12 11 9 15 15 O 1.52200 * 104.45332 * 179.97438 * 12 11 9 16 16 C 1.36013 * 113.99957 * 74.99815 * 15 12 11 17 17 C 1.39150 * 120.06328 * 90.00396 * 16 15 12 18 18 O 1.35992 * 120.06595 * 0.02562 * 17 16 15 19 19 C 1.42900 * 116.99696 * 180.02562 * 18 17 16 20 20 C 1.38561 * 119.86236 * 179.97438 * 17 16 15 21 21 C 1.38313 * 119.99410 * 359.97438 * 20 17 16 22 22 Br 1.89099 * 119.93960 * 180.02562 * 21 20 17 23 23 C 1.38339 * 120.12310 * 359.97438 * 21 20 17 24 24 C 1.50707 * 119.92802 * 180.02562 * 23 21 20 25 25 O 1.42903 * 109.46551 * 194.99966 * 24 23 21 26 26 Si 1.86301 * 109.47105 * 314.99590 * 24 23 21 27 27 C 1.38242 * 120.13767 * 359.78585 * 23 21 20 28 28 C 1.53781 * 113.61206 * 178.47078 * 6 4 3 29 29 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46887 * 300.00022 * 1 2 3 31 31 H 1.08993 * 109.46867 * 59.99942 * 1 2 3 32 32 H 1.09001 * 109.46715 * 239.99284 * 2 1 3 33 33 H 1.09003 * 109.46911 * 120.00138 * 2 1 3 34 34 H 1.08999 * 113.61060 * 203.67722 * 8 6 4 35 35 H 1.08997 * 113.61198 * 334.57515 * 8 6 4 36 36 H 1.08995 * 109.47568 * 202.46290 * 11 9 8 37 37 H 1.08996 * 109.47622 * 322.47327 * 11 9 8 38 38 H 1.09002 * 109.47097 * 299.99600 * 19 18 17 39 39 H 1.08998 * 109.47628 * 59.99460 * 19 18 17 40 40 H 1.09004 * 109.47131 * 179.97438 * 19 18 17 41 41 H 1.08004 * 120.00067 * 180.02562 * 20 17 16 42 42 H 1.08998 * 109.47065 * 75.00140 * 24 23 21 43 43 H 0.96694 * 114.00156 * 60.00090 * 25 24 23 44 44 H 1.48499 * 109.99902 * 180.02562 * 26 24 23 45 45 H 1.48501 * 110.00037 * 301.32226 * 26 24 23 46 46 H 1.07994 * 119.99239 * 180.25684 * 27 23 21 47 47 H 1.09000 * 113.61578 * 25.34539 * 28 6 4 48 48 H 1.09001 * 113.61682 * 156.17118 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4899 3.5733 -0.7744 8 6 3.9524 3.5935 1.3893 9 6 5.3426 2.9613 1.5695 10 9 5.3068 1.6770 2.1229 11 6 6.3503 3.8796 2.2638 12 16 6.1162 3.7854 4.0602 13 8 4.8762 4.3709 4.4329 14 8 6.4977 2.5058 4.5463 15 8 7.1644 4.7305 4.6299 16 6 6.8591 6.0479 4.4841 17 6 6.1370 6.7096 5.4726 18 8 5.7356 6.0406 6.5864 19 6 4.9977 6.7836 7.5588 20 6 5.8287 8.0519 5.3200 21 6 6.2390 8.7312 4.1872 22 35 5.8181 10.5631 3.9810 23 6 6.9578 8.0732 3.2053 24 6 7.4033 8.8178 1.9731 25 8 7.8053 7.8821 0.9706 26 14 5.9936 9.8513 1.3285 27 6 7.2726 6.7353 3.3544 28 6 5.4579 2.9682 0.0359 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5140 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.9689 4.6829 1.3577 35 1 3.2018 3.2003 2.0748 36 1 7.3628 3.5641 2.0124 37 1 6.1962 4.9060 1.9308 38 1 5.6049 7.6141 7.9189 39 1 4.0854 7.1706 7.1049 40 1 4.7396 6.1327 8.3942 41 1 5.2686 8.5678 6.0860 42 1 8.2436 9.4652 2.2237 43 1 7.1058 7.2726 0.6984 44 1 6.4200 10.5901 0.1129 45 1 4.8305 8.9836 1.0131 46 1 7.8374 6.2250 2.5883 47 1 5.9225 2.0701 -0.3711 48 1 5.8860 3.8861 -0.3670 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79904_15494190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:31 Heat of formation + Delta-G solvation = -238.425130 kcal Electronic energy + Delta-G solvation = -41473.813556 eV Core-core repulsion = 35779.413695 eV Total energy + Delta-G solvation = -5694.399861 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 483.027 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.23240 -42.73561 -41.89707 -40.46311 -39.59067 -39.34509 -38.53997 -37.57873 -37.44991 -37.35603 -33.84556 -32.88127 -32.30185 -31.93683 -30.78644 -28.81535 -27.26933 -26.81581 -26.41564 -24.78474 -24.01110 -23.24760 -22.72187 -21.66926 -20.75260 -19.92537 -19.33921 -19.19777 -18.80561 -18.74659 -18.19944 -17.95429 -17.73644 -17.46970 -17.16007 -16.96156 -16.83526 -16.44090 -16.39868 -16.16763 -16.02337 -15.55232 -15.51169 -15.25778 -14.86214 -14.79025 -14.60778 -14.42463 -14.26206 -14.11330 -14.00899 -13.80815 -13.72644 -13.55072 -13.46921 -13.43869 -13.27617 -13.08683 -13.01522 -12.90669 -12.86495 -12.58514 -12.58120 -12.45710 -12.40289 -12.27774 -12.19010 -11.74368 -11.71116 -11.63920 -11.58719 -11.43465 -10.73813 -10.33012 -9.45617 -4.60969 -1.39928 -0.52307 -0.24237 -0.03475 0.77027 0.97655 1.19265 1.50428 1.55186 1.88023 1.93346 2.04030 2.30561 2.60862 2.71431 2.74987 2.89739 3.15586 3.16344 3.25075 3.29475 3.31313 3.47279 3.59981 3.68213 3.84663 3.90030 3.97543 4.03598 4.12073 4.14519 4.24634 4.28695 4.32926 4.34192 4.37764 4.47126 4.48330 4.51385 4.56421 4.59136 4.71478 4.74413 4.77107 4.78837 4.83462 4.97703 5.07205 5.07452 5.36468 5.97639 6.52331 6.57262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.528 6.528 6 C -0.113 4.113 7 H 0.168 0.832 8 C -0.143 4.143 9 C 0.067 3.933 10 F -0.202 7.202 11 C -0.652 4.652 12 S 2.577 3.423 13 O -0.953 6.953 14 O -0.968 6.968 15 O -0.655 6.655 16 C 0.024 3.976 17 C 0.150 3.850 18 O -0.324 6.324 19 C 0.005 3.995 20 C -0.150 4.150 21 C -0.042 4.042 22 Br 0.107 6.893 23 C -0.101 4.101 24 C -0.049 4.049 25 O -0.540 6.540 26 Si 0.572 3.428 27 C -0.073 4.073 28 C -0.112 4.112 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.168 0.832 35 H 0.082 0.918 36 H 0.184 0.816 37 H 0.201 0.799 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.186 0.814 42 H 0.142 0.858 43 H 0.391 0.609 44 H -0.272 1.272 45 H -0.258 1.258 46 H 0.191 0.809 47 H 0.086 0.914 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.029 11.164 -1.328 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.132 4.132 7 H 0.186 0.814 8 C -0.180 4.180 9 C 0.047 3.953 10 F -0.182 7.182 11 C -0.781 4.781 12 S 2.676 3.324 13 O -0.951 6.951 14 O -0.966 6.966 15 O -0.614 6.614 16 C -0.019 4.019 17 C 0.099 3.901 18 O -0.236 6.236 19 C -0.089 4.089 20 C -0.170 4.170 21 C -0.122 4.122 22 Br 0.193 6.807 23 C -0.104 4.104 24 C -0.159 4.159 25 O -0.347 6.347 26 Si 0.473 3.527 27 C -0.094 4.094 28 C -0.150 4.150 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.186 0.814 35 H 0.101 0.899 36 H 0.202 0.798 37 H 0.218 0.782 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.133 0.867 41 H 0.203 0.797 42 H 0.160 0.840 43 H 0.240 0.760 44 H -0.197 1.197 45 H -0.181 1.181 46 H 0.208 0.792 47 H 0.104 0.896 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.055 11.443 -1.152 11.900 hybrid contribution 0.352 -2.517 -0.538 2.598 sum -2.703 8.927 -1.691 9.479 Atomic orbital electron populations 1.21826 0.90351 1.04349 1.03870 1.23269 0.97153 0.79312 1.02339 1.86485 1.24010 1.33472 1.83569 1.23815 0.80831 0.93011 0.71684 1.90699 1.61078 1.44171 1.45726 1.22177 0.98236 0.90157 1.02598 0.81420 1.23997 0.93906 1.05055 0.95080 1.22028 0.97411 0.78415 0.97427 1.92982 1.97320 1.41109 1.86791 1.31250 1.11494 1.11690 1.23643 1.05887 0.73705 0.73830 0.78942 1.93616 1.44932 1.75678 1.80877 1.93614 1.82405 1.41373 1.79190 1.85801 1.66976 1.24927 1.83702 1.17800 1.06855 0.79288 0.97995 1.19215 0.92425 0.91184 0.87233 1.86207 1.69145 1.40250 1.28041 1.23663 0.96122 0.98719 0.90368 1.21353 1.04127 0.91692 0.99823 1.21537 1.01622 0.92017 0.97057 1.96426 1.92786 1.06600 1.84915 1.20010 0.99112 0.93755 0.97532 1.24893 1.09582 0.95792 0.85665 1.86580 1.42114 1.49205 1.56838 0.93163 0.78134 0.89241 0.92209 1.21168 0.97958 0.94017 0.96219 1.23732 0.93220 1.07964 0.90061 0.88524 0.91370 0.90781 0.91081 0.92128 0.81431 0.89892 0.79792 0.78173 0.89543 0.90044 0.86658 0.79679 0.84040 0.75953 1.19729 1.18149 0.79197 0.89561 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.24 10.29 71.98 0.74 0.98 16 2 C 0.05 0.21 6.19 71.98 0.45 0.65 16 3 O -0.36 -2.07 10.22 -51.44 -0.53 -2.60 16 4 C 0.46 3.05 6.90 71.24 0.49 3.54 16 5 O -0.53 -7.31 14.56 21.98 0.32 -6.99 16 6 C -0.11 0.39 4.45 -11.01 -0.05 0.34 16 7 H 0.17 -1.85 8.14 -2.39 -0.02 -1.87 16 8 C -0.14 0.53 7.11 31.12 0.22 0.75 16 9 C 0.07 0.03 1.61 -10.27 -0.02 0.01 16 10 F -0.20 -2.50 14.66 44.97 0.66 -1.84 16 11 C -0.65 3.23 5.19 71.98 0.37 3.61 16 12 S 2.58 18.97 4.89 -56.49 -0.28 18.70 16 13 O -0.95 -8.88 15.82 -117.14 -1.85 -10.73 16 14 O -0.97 -17.64 17.53 -118.57 -2.08 -19.72 16 15 O -0.66 -3.88 9.84 -60.72 -0.60 -4.48 16 16 C 0.02 0.03 4.80 22.57 0.11 0.14 16 17 C 0.15 0.20 5.93 22.57 0.13 0.33 16 18 O -0.32 -1.41 9.73 -72.63 -0.71 -2.11 16 19 C 0.00 -0.02 9.81 113.37 1.11 1.09 16 20 C -0.15 0.81 8.77 22.36 0.20 1.00 16 21 C -0.04 0.27 5.81 22.31 0.13 0.40 16 22 Br 0.11 -0.99 27.32 -20.37 -0.56 -1.54 16 23 C -0.10 0.64 5.13 -19.84 -0.10 0.54 16 24 C -0.05 0.32 2.84 71.24 0.20 0.53 16 25 O -0.54 3.80 11.64 -148.98 -1.73 2.07 16 26 Si 0.57 -2.10 26.82 68.60 1.84 -0.26 16 27 C -0.07 0.41 7.66 22.35 0.17 0.58 16 28 C -0.11 0.61 6.93 31.12 0.22 0.83 16 29 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 31 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.07 0.26 8.13 -2.39 -0.02 0.24 16 33 H 0.06 0.36 8.13 -2.39 -0.02 0.34 16 34 H 0.17 -2.13 7.97 -2.39 -0.02 -2.15 16 35 H 0.08 0.05 8.10 -2.39 -0.02 0.03 16 36 H 0.18 -1.82 8.14 -2.39 -0.02 -1.84 16 37 H 0.20 -3.14 6.44 -2.39 -0.02 -3.15 16 38 H 0.09 -0.88 7.66 -2.39 -0.02 -0.90 16 39 H 0.08 -0.70 7.67 -2.39 -0.02 -0.72 16 40 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.19 -2.08 6.30 -2.91 -0.02 -2.10 16 42 H 0.14 -1.15 7.96 -2.39 -0.02 -1.17 16 43 H 0.39 -5.90 8.44 -74.06 -0.62 -6.52 16 44 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 45 H -0.26 0.18 7.11 99.48 0.71 0.89 16 46 H 0.19 -2.25 6.56 -2.91 -0.02 -2.27 16 47 H 0.09 -0.02 7.42 -2.39 -0.02 -0.04 16 48 H 0.17 -2.78 8.10 -2.39 -0.02 -2.80 16 Total: 0.00 -39.50 424.39 -0.68 -40.18 By element: Atomic # 1 Polarization: -26.44 SS G_CDS: 0.45 Total: -25.99 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 4.37 Total: 15.31 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -7.18 Total: -44.56 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.66 Total: -1.84 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 1.84 Total: -0.26 kcal Atomic # 16 Polarization: 18.97 SS G_CDS: -0.28 Total: 18.70 kcal Atomic # 35 Polarization: -0.99 SS G_CDS: -0.56 Total: -1.54 kcal Total: -39.50 -0.68 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79904_15494190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.244 kcal (2) G-P(sol) polarization free energy of solvation -39.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds