Wall clock time and date at job start Tue Mar 9 2021 13:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 116.99722 * 2 1 4 4 C 1.39153 * 120.06801 * 179.97438 * 3 2 1 5 5 O 1.36012 * 120.06228 * 0.02562 * 4 3 2 6 6 S 1.52193 * 114.00216 * 269.72907 * 5 4 3 7 7 O 1.42104 * 104.27579 * 318.92169 * 6 5 4 8 8 O 1.42099 * 104.27853 * 191.07370 * 6 5 4 9 9 C 1.81401 * 104.45379 * 74.99483 * 6 5 4 10 10 C 1.52999 * 109.46839 * 180.02562 * 9 6 5 11 11 H 1.08997 * 112.91042 * 43.74822 * 10 9 6 12 12 C 1.53784 * 113.61210 * 175.00407 * 10 9 6 13 13 C 1.53777 * 87.08363 * 89.11207 * 12 10 9 14 14 O 1.42901 * 113.61771 * 270.88593 * 13 12 10 15 15 C 1.42900 * 113.99785 * 296.37798 * 14 13 12 16 16 C 1.52999 * 113.61306 * 140.06665 * 13 12 10 17 17 F 1.39897 * 109.47374 * 54.57807 * 16 13 12 18 18 F 1.39903 * 109.46953 * 174.58214 * 16 13 12 19 19 F 1.39905 * 109.46993 * 294.57807 * 16 13 12 20 20 C 1.53780 * 87.07892 * 25.43583 * 13 12 10 21 21 C 1.38561 * 119.87638 * 179.74506 * 4 3 2 22 22 C 1.38236 * 120.00957 * 0.27808 * 21 4 3 23 23 C 1.50697 * 119.93498 * 179.97438 * 22 21 4 24 24 O 1.42902 * 109.47057 * 16.39506 * 23 22 21 25 25 Si 1.86304 * 109.46989 * 256.39856 * 23 22 21 26 26 C 1.38343 * 120.13515 * 359.97421 * 22 21 4 27 27 Br 1.89093 * 119.93668 * 180.02562 * 26 22 21 28 28 C 1.38320 * 120.12533 * 359.97438 * 26 22 21 29 29 H 1.08995 * 109.47350 * 300.00286 * 1 2 3 30 30 H 1.09010 * 109.47141 * 60.00320 * 1 2 3 31 31 H 1.08994 * 109.47342 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46578 * 60.00377 * 9 6 5 33 33 H 1.08991 * 109.46980 * 300.00179 * 9 6 5 34 34 H 1.09006 * 113.61092 * 334.56601 * 12 10 9 35 35 H 1.08995 * 113.61338 * 203.66597 * 12 10 9 36 36 H 1.09004 * 109.47344 * 299.47214 * 15 14 13 37 37 H 1.08998 * 109.47594 * 59.46936 * 15 14 13 38 38 H 1.08998 * 109.47232 * 179.47394 * 15 14 13 39 39 H 1.09000 * 113.61974 * 89.11732 * 20 13 12 40 40 H 1.09008 * 113.61290 * 219.93672 * 20 13 12 41 41 H 1.07998 * 119.99429 * 180.25327 * 21 4 3 42 42 H 1.09000 * 109.47079 * 136.40000 * 23 22 21 43 43 H 0.96695 * 114.00277 * 179.97438 * 24 23 22 44 44 H 1.48500 * 109.99837 * 304.22362 * 25 23 22 45 45 H 1.48496 * 109.99999 * 65.54212 * 25 23 22 46 46 H 1.07999 * 120.00449 * 180.02562 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1793 0.1473 0.0005 6 16 4.5226 -0.3679 1.3909 7 8 4.8426 0.8033 2.1294 8 8 5.4960 -1.3771 1.1602 9 6 2.9776 -1.1002 1.9967 10 6 3.1958 -1.6596 3.4040 11 1 3.7647 -0.9860 4.0448 12 6 1.9124 -2.1963 4.0594 13 6 2.2420 -3.5515 3.4117 14 8 1.6964 -3.7070 2.1002 15 6 0.2680 -3.6964 2.0599 16 6 1.9577 -4.7498 4.3195 17 9 0.6298 -4.6990 4.7567 18 9 2.1690 -5.9351 3.6069 19 9 2.8144 -4.7112 5.4248 20 6 3.7143 -3.1073 3.4178 21 6 4.0607 2.5230 -0.0048 22 6 3.3041 3.6799 -0.0049 23 6 3.9855 5.0240 -0.0101 24 8 5.3524 4.8636 -0.3946 25 14 3.9034 5.7684 1.6958 26 6 1.9226 3.6063 -0.0001 27 35 0.8932 5.1924 -0.0009 28 6 1.2931 2.3747 0.0042 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.6707 -1.9051 1.3289 33 1 2.2006 -0.3364 2.0262 34 1 1.0011 -1.7384 3.6743 35 1 1.9519 -2.2116 5.1485 36 1 -0.1186 -4.5197 2.6607 37 1 -0.0998 -2.7513 2.4594 38 1 -0.0673 -3.8102 1.0291 39 1 4.2465 -3.3719 4.3315 40 1 4.2582 -3.3863 2.5153 41 1 5.1390 2.5830 -0.0085 42 1 3.4836 5.6830 -0.7186 43 1 5.8534 5.6903 -0.4200 44 1 2.4913 5.8462 2.1486 45 1 4.6972 4.9489 2.6463 46 1 0.2145 2.3195 0.0075 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79904_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:15 Heat of formation + Delta-G solvation = -283.458289 kcal Electronic energy + Delta-G solvation = -43552.300449 eV Core-core repulsion = 37363.948185 eV Total energy + Delta-G solvation = -6188.352264 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 491.008 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -51.20259 -48.75272 -48.62933 -42.73640 -41.61662 -40.46565 -39.56446 -38.24950 -37.47502 -37.44461 -37.13186 -33.53397 -32.46475 -31.86045 -30.66760 -29.14981 -28.55845 -27.87925 -26.97906 -26.52328 -24.76544 -23.83619 -23.10941 -21.62480 -20.79112 -20.04630 -19.72803 -19.52237 -19.39083 -19.13791 -19.09288 -18.57385 -18.05496 -17.45600 -17.38291 -17.08451 -16.75280 -16.65172 -16.35837 -16.17385 -15.93599 -15.80487 -15.68754 -15.59909 -15.53901 -15.32156 -15.09840 -14.86724 -14.82074 -14.70061 -14.55744 -14.49275 -14.39975 -14.28890 -13.91395 -13.70252 -13.45762 -13.31133 -13.26923 -13.20792 -13.14446 -13.12651 -12.96624 -12.78149 -12.67618 -12.50394 -12.37015 -12.20199 -12.16281 -11.70858 -11.53031 -11.33155 -10.93411 -10.77458 -10.26210 -9.50899 -5.10896 -1.18532 -0.46302 -0.30403 0.09269 0.91651 1.16434 1.50145 1.57810 1.62560 1.90438 1.92648 2.03569 2.42989 2.50359 2.56730 2.75322 2.83397 2.83778 2.99483 3.14532 3.20858 3.29010 3.31581 3.40980 3.45427 3.72027 3.74918 3.81659 3.84580 3.94820 3.98779 4.05986 4.10875 4.15464 4.20703 4.22869 4.28572 4.31470 4.36393 4.40805 4.43311 4.47074 4.53302 4.64757 4.77983 4.82157 5.08295 5.54488 5.65500 6.45484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.302 6.302 3 C 0.126 3.874 4 C 0.052 3.948 5 O -0.647 6.647 6 S 2.586 3.414 7 O -0.949 6.949 8 O -0.917 6.917 9 C -0.630 4.630 10 C -0.093 4.093 11 H 0.109 0.891 12 C -0.136 4.136 13 C 0.043 3.957 14 O -0.329 6.329 15 C 0.010 3.990 16 C 0.438 3.562 17 F -0.182 7.182 18 F -0.172 7.172 19 F -0.174 7.174 20 C -0.127 4.127 21 C -0.022 4.022 22 C -0.070 4.070 23 C -0.068 4.068 24 O -0.545 6.545 25 Si 0.671 3.329 26 C -0.044 4.044 27 Br -0.013 7.013 28 C -0.162 4.162 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.169 0.831 42 H 0.091 0.909 43 H 0.391 0.609 44 H -0.231 1.231 45 H -0.243 1.243 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 6.291 -0.307 8.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.215 6.215 3 C 0.077 3.923 4 C 0.009 3.991 5 O -0.606 6.606 6 S 2.682 3.318 7 O -0.948 6.948 8 O -0.915 6.915 9 C -0.757 4.757 10 C -0.113 4.113 11 H 0.127 0.873 12 C -0.174 4.174 13 C 0.000 4.000 14 O -0.247 6.247 15 C -0.086 4.086 16 C 0.383 3.617 17 F -0.163 7.163 18 F -0.154 7.154 19 F -0.155 7.155 20 C -0.164 4.164 21 C -0.043 4.043 22 C -0.073 4.073 23 C -0.178 4.178 24 O -0.352 6.352 25 Si 0.567 3.433 26 C -0.125 4.125 27 Br 0.073 6.927 28 C -0.182 4.182 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.178 0.822 33 H 0.157 0.843 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.128 0.872 41 H 0.186 0.814 42 H 0.109 0.891 43 H 0.240 0.760 44 H -0.154 1.154 45 H -0.167 1.167 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.548 5.964 0.126 8.146 hybrid contribution -1.168 -1.432 -0.067 1.850 sum -6.716 4.531 0.060 8.102 Atomic orbital electron populations 1.23342 0.76676 1.05375 1.02441 1.86235 1.22881 1.24612 1.87782 1.18946 0.90120 0.85944 0.97295 1.17320 0.85542 0.83253 1.12941 1.85769 1.72220 1.45158 1.57426 1.05831 0.77088 0.75441 0.73451 1.93668 1.82784 1.46179 1.72127 1.93663 1.55373 1.60239 1.82201 1.30789 1.23581 1.14770 1.06550 1.21750 0.99095 0.97009 0.93406 0.87308 1.23573 0.99155 0.92759 1.01949 1.23913 1.00054 0.90676 0.85358 1.88080 1.21567 1.92970 1.22062 1.23144 0.79708 1.01486 1.04277 1.21136 0.74300 0.85775 0.80477 1.93186 1.35936 1.96612 1.90576 1.93229 1.94440 1.49864 1.77836 1.93186 1.70369 1.96542 1.55433 1.23493 0.91857 0.93918 1.07096 1.20999 1.02614 0.87996 0.92641 1.19000 0.90957 0.95094 1.02213 1.24753 0.85482 0.95647 1.11869 1.86373 1.19974 1.36998 1.91849 0.95912 0.84486 0.87781 0.75078 1.21525 0.93328 0.93245 1.04398 1.96819 1.69303 1.29608 1.96965 1.21012 1.01149 0.89243 1.06819 0.91724 0.91390 0.87003 0.82212 0.84269 0.88520 0.86903 0.92703 0.92744 0.88002 0.85663 0.87181 0.81401 0.89146 0.75980 1.15443 1.16703 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 101.05 0.99 0.91 16 2 O -0.30 0.41 7.53 -34.23 -0.26 0.15 16 3 C 0.13 0.05 5.83 -39.12 -0.23 -0.18 16 4 C 0.05 0.14 4.80 -39.12 -0.19 -0.04 16 5 O -0.65 -2.30 9.84 -54.28 -0.53 -2.83 16 6 S 2.59 8.23 5.16 -107.50 -0.55 7.67 16 7 O -0.95 -4.68 16.26 -67.04 -1.09 -5.77 16 8 O -0.92 -5.51 18.09 -67.04 -1.21 -6.73 16 9 C -0.63 0.31 4.11 37.16 0.15 0.46 16 10 C -0.09 0.11 3.84 -89.81 -0.35 -0.24 16 11 H 0.11 -0.25 8.13 -51.93 -0.42 -0.67 16 12 C -0.14 0.30 6.50 -25.92 -0.17 0.13 16 13 C 0.04 -0.01 0.85 -89.81 -0.08 -0.09 16 14 O -0.33 -0.01 8.35 -35.23 -0.29 -0.30 16 15 C 0.01 -0.02 10.41 101.05 1.05 1.03 16 16 C 0.44 0.52 2.55 37.16 0.09 0.62 16 17 F -0.18 -0.21 15.35 2.25 0.03 -0.18 16 18 F -0.17 -0.51 17.09 2.25 0.04 -0.48 16 19 F -0.17 -0.23 15.83 2.25 0.04 -0.19 16 20 C -0.13 0.04 6.89 -25.92 -0.18 -0.14 16 21 C -0.02 -0.06 8.36 -39.46 -0.33 -0.39 16 22 C -0.07 -0.11 4.49 -104.59 -0.47 -0.58 16 23 C -0.07 0.04 2.43 36.00 0.09 0.13 16 24 O -0.54 0.46 11.50 -35.23 -0.41 0.06 16 25 Si 0.67 -0.71 31.35 -169.99 -5.33 -6.04 16 26 C -0.04 -0.02 5.96 -39.51 -0.24 -0.25 16 27 Br -0.01 0.01 29.84 -68.01 -2.03 -2.02 16 28 C -0.16 0.13 8.77 -39.43 -0.35 -0.21 16 29 H 0.06 -0.41 7.65 -51.93 -0.40 -0.80 16 30 H 0.07 -0.37 7.67 -51.92 -0.40 -0.77 16 31 H 0.11 -0.74 8.14 -51.93 -0.42 -1.16 16 32 H 0.16 -0.13 6.08 -51.93 -0.32 -0.45 16 33 H 0.14 -0.32 6.03 -51.93 -0.31 -0.63 16 34 H 0.10 -0.35 6.56 -51.93 -0.34 -0.69 16 35 H 0.11 -0.36 8.07 -51.93 -0.42 -0.78 16 36 H 0.05 -0.08 6.47 -51.93 -0.34 -0.42 16 37 H 0.05 -0.22 6.58 -51.93 -0.34 -0.57 16 38 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 39 H 0.13 -0.22 7.01 -51.93 -0.36 -0.58 16 40 H 0.11 0.05 8.10 -51.92 -0.42 -0.37 16 41 H 0.17 0.52 7.16 -52.49 -0.38 0.14 16 42 H 0.09 -0.21 7.14 -51.93 -0.37 -0.58 16 43 H 0.39 -2.29 8.74 45.56 0.40 -1.89 16 44 H -0.23 -0.06 6.31 56.52 0.36 0.30 16 45 H -0.24 -0.72 7.11 56.52 0.40 -0.32 16 46 H 0.16 -0.58 6.30 -52.49 -0.33 -0.91 16 LS Contribution 409.21 15.07 6.17 6.17 Total: 0.00 -10.86 409.21 -10.45 -21.31 By element: Atomic # 1 Polarization: -7.15 SS G_CDS: -4.84 Total: -11.99 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.19 Total: 1.17 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -3.79 Total: -15.42 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.11 Total: -0.85 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.33 Total: -6.04 kcal Atomic # 16 Polarization: 8.23 SS G_CDS: -0.55 Total: 7.67 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.03 Total: -2.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -10.86 -10.45 -21.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79904_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -262.148 kcal (2) G-P(sol) polarization free energy of solvation -10.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds