Wall clock time and date at job start Tue Mar 9 2021 13:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 116.99722 * 2 1 4 4 C 1.39153 * 120.06801 * 179.97438 * 3 2 1 5 5 O 1.36012 * 120.06228 * 0.02562 * 4 3 2 6 6 S 1.52193 * 114.00216 * 269.72907 * 5 4 3 7 7 O 1.42104 * 104.27579 * 318.92169 * 6 5 4 8 8 O 1.42099 * 104.27853 * 191.07370 * 6 5 4 9 9 C 1.81401 * 104.45379 * 74.99483 * 6 5 4 10 10 C 1.52999 * 109.46839 * 180.02562 * 9 6 5 11 11 H 1.08997 * 112.91042 * 43.74822 * 10 9 6 12 12 C 1.53784 * 113.61210 * 175.00407 * 10 9 6 13 13 C 1.53777 * 87.08363 * 89.11207 * 12 10 9 14 14 O 1.42901 * 113.61771 * 270.88593 * 13 12 10 15 15 C 1.42900 * 113.99785 * 296.37798 * 14 13 12 16 16 C 1.52999 * 113.61306 * 140.06665 * 13 12 10 17 17 F 1.39897 * 109.47374 * 54.57807 * 16 13 12 18 18 F 1.39903 * 109.46953 * 174.58214 * 16 13 12 19 19 F 1.39905 * 109.46993 * 294.57807 * 16 13 12 20 20 C 1.53780 * 87.07892 * 25.43583 * 13 12 10 21 21 C 1.38561 * 119.87638 * 179.74506 * 4 3 2 22 22 C 1.38236 * 120.00957 * 0.27808 * 21 4 3 23 23 C 1.50697 * 119.93498 * 179.97438 * 22 21 4 24 24 O 1.42902 * 109.47057 * 16.39506 * 23 22 21 25 25 Si 1.86304 * 109.46989 * 256.39856 * 23 22 21 26 26 C 1.38343 * 120.13515 * 359.97421 * 22 21 4 27 27 Br 1.89093 * 119.93668 * 180.02562 * 26 22 21 28 28 C 1.38320 * 120.12533 * 359.97438 * 26 22 21 29 29 H 1.08995 * 109.47350 * 300.00286 * 1 2 3 30 30 H 1.09010 * 109.47141 * 60.00320 * 1 2 3 31 31 H 1.08994 * 109.47342 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46578 * 60.00377 * 9 6 5 33 33 H 1.08991 * 109.46980 * 300.00179 * 9 6 5 34 34 H 1.09006 * 113.61092 * 334.56601 * 12 10 9 35 35 H 1.08995 * 113.61338 * 203.66597 * 12 10 9 36 36 H 1.09004 * 109.47344 * 299.47214 * 15 14 13 37 37 H 1.08998 * 109.47594 * 59.46936 * 15 14 13 38 38 H 1.08998 * 109.47232 * 179.47394 * 15 14 13 39 39 H 1.09000 * 113.61974 * 89.11732 * 20 13 12 40 40 H 1.09008 * 113.61290 * 219.93672 * 20 13 12 41 41 H 1.07998 * 119.99429 * 180.25327 * 21 4 3 42 42 H 1.09000 * 109.47079 * 136.40000 * 23 22 21 43 43 H 0.96695 * 114.00277 * 179.97438 * 24 23 22 44 44 H 1.48500 * 109.99837 * 304.22362 * 25 23 22 45 45 H 1.48496 * 109.99999 * 65.54212 * 25 23 22 46 46 H 1.07999 * 120.00449 * 180.02562 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1793 0.1473 0.0005 6 16 4.5226 -0.3679 1.3909 7 8 4.8426 0.8033 2.1294 8 8 5.4960 -1.3771 1.1602 9 6 2.9776 -1.1002 1.9967 10 6 3.1958 -1.6596 3.4040 11 1 3.7647 -0.9860 4.0448 12 6 1.9124 -2.1963 4.0594 13 6 2.2420 -3.5515 3.4117 14 8 1.6964 -3.7070 2.1002 15 6 0.2680 -3.6964 2.0599 16 6 1.9577 -4.7498 4.3195 17 9 0.6298 -4.6990 4.7567 18 9 2.1690 -5.9351 3.6069 19 9 2.8144 -4.7112 5.4248 20 6 3.7143 -3.1073 3.4178 21 6 4.0607 2.5230 -0.0048 22 6 3.3041 3.6799 -0.0049 23 6 3.9855 5.0240 -0.0101 24 8 5.3524 4.8636 -0.3946 25 14 3.9034 5.7684 1.6958 26 6 1.9226 3.6063 -0.0001 27 35 0.8932 5.1924 -0.0009 28 6 1.2931 2.3747 0.0042 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.6707 -1.9051 1.3289 33 1 2.2006 -0.3364 2.0262 34 1 1.0011 -1.7384 3.6743 35 1 1.9519 -2.2116 5.1485 36 1 -0.1186 -4.5197 2.6607 37 1 -0.0998 -2.7513 2.4594 38 1 -0.0673 -3.8102 1.0291 39 1 4.2465 -3.3719 4.3315 40 1 4.2582 -3.3863 2.5153 41 1 5.1390 2.5830 -0.0085 42 1 3.4836 5.6830 -0.7186 43 1 5.8534 5.6903 -0.4200 44 1 2.4913 5.8462 2.1486 45 1 4.6972 4.9489 2.6463 46 1 0.2145 2.3195 0.0075 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79904_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:11 Heat of formation + Delta-G solvation = -285.241998 kcal Electronic energy + Delta-G solvation = -43552.377796 eV Core-core repulsion = 37363.948185 eV Total energy + Delta-G solvation = -6188.429611 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 491.008 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -51.28843 -48.82278 -48.75703 -42.78256 -41.52555 -40.47493 -39.48322 -38.54871 -37.48729 -37.36141 -37.31846 -33.53508 -32.41672 -31.85450 -30.63603 -28.88670 -28.37475 -27.87827 -26.82994 -26.41701 -24.83652 -23.82654 -23.07875 -21.69691 -20.76209 -20.09349 -19.73825 -19.59877 -19.43669 -19.24111 -19.05078 -18.63789 -18.11762 -17.36614 -17.31641 -16.94384 -16.81073 -16.51823 -16.30710 -16.21611 -15.90878 -15.72507 -15.69969 -15.63064 -15.55553 -15.34063 -15.17540 -14.94233 -14.91131 -14.71353 -14.54528 -14.45095 -14.35760 -14.30001 -13.94347 -13.85472 -13.59320 -13.45651 -13.30925 -13.21608 -13.08897 -12.98873 -12.90806 -12.67783 -12.51067 -12.39135 -12.24256 -12.14713 -12.14160 -11.68183 -11.49167 -11.33324 -10.84627 -10.67905 -10.27402 -9.46159 -5.06277 -1.31806 -0.54020 -0.30514 0.10347 0.76813 1.20697 1.48349 1.63915 1.73854 1.90076 2.04774 2.05189 2.31452 2.50337 2.56426 2.70327 2.79519 2.97156 3.06156 3.17966 3.21634 3.26685 3.33167 3.45405 3.47166 3.81057 3.88552 3.98240 4.11304 4.17952 4.25650 4.30278 4.31556 4.31683 4.34605 4.38833 4.42673 4.43686 4.47137 4.52290 4.61169 4.70405 4.72571 4.79327 4.82089 4.86995 5.03762 5.69867 5.82583 6.82128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.309 6.309 3 C 0.133 3.867 4 C 0.026 3.974 5 O -0.658 6.658 6 S 2.579 3.421 7 O -0.977 6.977 8 O -0.959 6.959 9 C -0.604 4.604 10 C -0.100 4.100 11 H 0.120 0.880 12 C -0.123 4.123 13 C 0.041 3.959 14 O -0.344 6.344 15 C 0.000 4.000 16 C 0.434 3.566 17 F -0.181 7.181 18 F -0.188 7.188 19 F -0.177 7.177 20 C -0.139 4.139 21 C -0.047 4.047 22 C -0.087 4.087 23 C -0.075 4.075 24 O -0.563 6.563 25 Si 0.747 3.253 26 C -0.050 4.050 27 Br 0.000 7.000 28 C -0.152 4.152 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.151 0.849 42 H 0.112 0.888 43 H 0.410 0.590 44 H -0.242 1.242 45 H -0.306 1.306 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 7.334 -0.233 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.222 6.222 3 C 0.084 3.916 4 C -0.017 4.017 5 O -0.617 6.617 6 S 2.679 3.321 7 O -0.975 6.975 8 O -0.957 6.957 9 C -0.735 4.735 10 C -0.120 4.120 11 H 0.138 0.862 12 C -0.162 4.162 13 C -0.002 4.002 14 O -0.262 6.262 15 C -0.095 4.095 16 C 0.379 3.621 17 F -0.162 7.162 18 F -0.169 7.169 19 F -0.158 7.158 20 C -0.176 4.176 21 C -0.068 4.068 22 C -0.089 4.089 23 C -0.183 4.183 24 O -0.373 6.373 25 Si 0.648 3.352 26 C -0.131 4.131 27 Br 0.087 6.913 28 C -0.172 4.172 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.185 0.815 33 H 0.182 0.818 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.153 0.847 40 H 0.114 0.886 41 H 0.169 0.831 42 H 0.129 0.871 43 H 0.263 0.737 44 H -0.166 1.166 45 H -0.234 1.234 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.595 7.049 0.160 11.117 hybrid contribution -0.293 -1.825 -0.067 1.849 sum -8.888 5.224 0.092 10.310 Atomic orbital electron populations 1.23775 0.74507 1.07266 1.03911 1.86247 1.25055 1.23643 1.87272 1.18897 0.89221 0.87075 0.96443 1.17626 0.86756 0.82747 1.14575 1.85723 1.72892 1.45718 1.57333 1.05879 0.78272 0.74730 0.73181 1.93625 1.84059 1.47233 1.72590 1.93600 1.58284 1.60970 1.82876 1.30580 1.20667 1.15194 1.07026 1.21863 1.00301 0.96699 0.93124 0.86200 1.23631 0.99139 0.90763 1.02637 1.23996 1.00012 0.90782 0.85378 1.88069 1.23009 1.93056 1.22089 1.23373 0.78469 1.02349 1.05309 1.21462 0.74235 0.85809 0.80589 1.93181 1.35880 1.96588 1.90599 1.93194 1.94545 1.50964 1.78199 1.93175 1.70479 1.96537 1.55635 1.23627 0.92229 0.94773 1.06990 1.20996 1.02236 0.89119 0.94418 1.19287 0.91787 0.95413 1.02443 1.24907 0.85737 0.95017 1.12634 1.86355 1.20237 1.38926 1.91809 0.95202 0.81514 0.85841 0.72595 1.21711 0.93064 0.94319 1.03983 1.96826 1.68608 1.28993 1.96913 1.21377 1.02558 0.88214 1.05061 0.89652 0.90531 0.85040 0.81455 0.81849 0.86332 0.85543 0.93785 0.90384 0.86542 0.84737 0.88616 0.83118 0.87073 0.73717 1.16609 1.23424 0.79108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.31 1.34 7.53 -79.57 -0.60 0.74 16 3 C 0.13 0.02 5.83 22.57 0.13 0.16 16 4 C 0.03 0.18 4.80 22.57 0.11 0.29 16 5 O -0.66 -6.23 9.84 -60.70 -0.60 -6.83 16 6 S 2.58 22.08 5.16 -56.49 -0.29 21.79 16 7 O -0.98 -12.35 16.26 -118.57 -1.93 -14.28 16 8 O -0.96 -14.62 18.09 -118.57 -2.15 -16.77 16 9 C -0.60 0.72 4.11 71.98 0.30 1.02 16 10 C -0.10 0.28 3.84 -10.27 -0.04 0.24 16 11 H 0.12 -0.58 8.13 -2.39 -0.02 -0.60 16 12 C -0.12 0.78 6.50 31.12 0.20 0.98 16 13 C 0.04 -0.04 0.85 -10.27 -0.01 -0.05 16 14 O -0.34 0.24 8.35 -148.98 -1.24 -1.01 16 15 C 0.00 0.00 10.41 113.37 1.18 1.18 16 16 C 0.43 1.00 2.55 71.98 0.18 1.19 16 17 F -0.18 -0.30 15.35 44.97 0.69 0.39 16 18 F -0.19 -1.26 17.09 44.97 0.77 -0.49 16 19 F -0.18 -0.48 15.83 44.97 0.71 0.23 16 20 C -0.14 0.02 6.89 31.12 0.21 0.23 16 21 C -0.05 -0.38 8.36 22.35 0.19 -0.20 16 22 C -0.09 -0.33 4.49 -19.84 -0.09 -0.42 16 23 C -0.07 0.06 2.43 71.23 0.17 0.23 16 24 O -0.56 0.23 11.50 -148.98 -1.71 -1.49 16 25 Si 0.75 -1.08 31.35 68.60 2.15 1.07 16 26 C -0.05 0.00 5.96 22.31 0.13 0.13 16 27 Br 0.00 0.00 29.84 -20.37 -0.61 -0.61 16 28 C -0.15 0.48 8.77 22.37 0.20 0.68 16 29 H 0.08 -1.42 7.65 -2.39 -0.02 -1.44 16 30 H 0.08 -1.08 7.67 -2.38 -0.02 -1.10 16 31 H 0.13 -2.19 8.14 -2.39 -0.02 -2.21 16 32 H 0.17 -0.35 6.08 -2.39 -0.01 -0.37 16 33 H 0.16 -1.01 6.03 -2.40 -0.01 -1.03 16 34 H 0.12 -1.26 6.56 -2.38 -0.02 -1.28 16 35 H 0.13 -1.09 8.07 -2.39 -0.02 -1.11 16 36 H 0.04 -0.17 6.47 -2.39 -0.02 -0.19 16 37 H 0.08 -0.89 6.58 -2.39 -0.02 -0.90 16 38 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 39 H 0.13 -0.37 7.01 -2.39 -0.02 -0.38 16 40 H 0.10 0.26 8.10 -2.38 -0.02 0.24 16 41 H 0.15 1.54 7.16 -2.91 -0.02 1.52 16 42 H 0.11 -0.60 7.14 -2.39 -0.02 -0.62 16 43 H 0.41 -4.54 8.74 -74.06 -0.65 -5.19 16 44 H -0.24 -0.01 6.31 99.48 0.63 0.61 16 45 H -0.31 -2.78 7.11 99.48 0.71 -2.08 16 46 H 0.19 -2.01 6.30 -2.91 -0.02 -2.02 16 Total: 0.00 -29.31 409.21 -0.42 -29.73 By element: Atomic # 1 Polarization: -19.67 SS G_CDS: 0.40 Total: -19.27 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 3.98 Total: 6.79 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -8.23 Total: -39.63 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 2.17 Total: 0.13 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: 2.15 Total: 1.07 kcal Atomic # 16 Polarization: 22.08 SS G_CDS: -0.29 Total: 21.79 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.61 Total: -0.61 kcal Total: -29.31 -0.42 -29.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79904_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.514 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -284.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds