Wall clock time and date at job start Tue Mar 9 2021 13:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 117.00276 * 2 1 4 4 C 1.39148 * 120.07141 * 180.02562 * 3 2 1 5 5 O 1.36010 * 120.06238 * 0.02562 * 4 3 2 6 6 S 1.52195 * 114.00472 * 269.72654 * 5 4 3 7 7 O 1.42104 * 104.27748 * 318.92874 * 6 5 4 8 8 O 1.42098 * 104.28177 * 191.06943 * 6 5 4 9 9 C 1.81406 * 104.44878 * 74.99889 * 6 5 4 10 10 H 1.08998 * 112.85108 * 53.80436 * 9 6 5 11 11 C 1.53784 * 113.61313 * 185.00422 * 9 6 5 12 12 C 1.53783 * 87.08027 * 89.19948 * 11 9 6 13 13 H 1.09004 * 113.61403 * 270.79501 * 12 11 9 14 14 C 1.50702 * 113.61300 * 139.98547 * 12 11 9 15 15 C 1.38234 * 120.00257 * 121.52818 * 14 12 11 16 16 C 1.38238 * 119.99675 * 180.25732 * 15 14 12 17 17 C 1.38228 * 120.00114 * 359.50218 * 16 15 14 18 18 C 1.38234 * 120.00051 * 0.47390 * 17 16 15 19 19 C 1.38235 * 119.99522 * 301.49830 * 14 12 11 20 20 C 1.53772 * 87.17556 * 25.39083 * 12 11 9 21 21 C 1.38563 * 119.87985 * 179.74689 * 4 3 2 22 22 C 1.38241 * 120.00428 * 0.27711 * 21 4 3 23 23 C 1.50701 * 119.93246 * 179.97438 * 22 21 4 24 24 O 1.42903 * 109.46840 * 14.99803 * 23 22 21 25 25 Si 1.86300 * 109.47140 * 134.99640 * 23 22 21 26 26 C 1.38334 * 120.13712 * 359.97323 * 22 21 4 27 27 Br 1.89105 * 119.93715 * 180.02562 * 26 22 21 28 28 C 1.38315 * 120.12805 * 359.97438 * 26 22 21 29 29 H 1.08997 * 109.47358 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46993 * 299.99588 * 1 2 3 31 31 H 1.08995 * 109.47138 * 59.99615 * 1 2 3 32 32 H 1.09001 * 113.61160 * 334.64851 * 11 9 6 33 33 H 1.08996 * 113.61216 * 203.74611 * 11 9 6 34 34 H 1.08002 * 119.99744 * 359.97115 * 15 14 12 35 35 H 1.08004 * 119.99577 * 179.72816 * 16 15 14 36 36 H 1.07999 * 119.99925 * 180.25942 * 17 16 15 37 37 H 1.08001 * 120.00294 * 179.78842 * 18 17 16 38 38 H 1.07996 * 120.00471 * 0.02562 * 19 14 12 39 39 H 1.08995 * 113.61713 * 89.15923 * 20 12 11 40 40 H 1.09002 * 113.61377 * 220.06212 * 20 12 11 41 41 H 1.07997 * 120.00171 * 180.24733 * 21 4 3 42 42 H 1.08996 * 109.47346 * 255.00175 * 23 22 21 43 43 H 0.96700 * 113.99660 * 179.97438 * 24 23 22 44 44 H 1.48499 * 110.00107 * 178.68372 * 25 23 22 45 45 H 1.48500 * 110.00162 * 300.00312 * 25 23 22 46 46 H 1.08005 * 120.00539 * 180.02562 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4359 1.2861 -0.0005 5 8 4.1793 0.1471 -0.0016 6 16 4.5238 -0.3687 1.3882 7 8 4.8443 0.8021 2.1270 8 8 5.4969 -1.3779 1.1563 9 6 2.9791 -1.1013 1.9950 10 1 2.5637 -1.8406 1.3102 11 6 3.0583 -1.5869 3.4520 12 6 2.6105 -0.1747 3.8643 13 1 3.4375 0.5197 4.0127 14 6 1.6248 -0.1628 5.0042 15 6 1.9238 0.5179 6.1696 16 6 1.0218 0.5243 7.2171 17 6 -0.1835 -0.1413 7.0954 18 6 -0.4828 -0.8216 5.9298 19 6 0.4212 -0.8321 4.8841 20 6 1.9521 -0.0616 2.4793 21 6 4.0609 2.5227 -0.0058 22 6 3.3043 3.6797 -0.0048 23 6 3.9857 5.0238 -0.0100 24 8 5.3604 4.8595 -0.3640 25 14 3.1537 6.1371 -1.2507 26 6 1.9229 3.6062 0.0010 27 35 0.8934 5.1924 0.0016 28 6 1.2932 2.3747 0.0052 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 4.0692 -1.8361 3.7748 33 1 2.3323 -2.3631 3.6935 34 1 2.8642 1.0408 6.2633 35 1 1.2574 1.0524 8.1293 36 1 -0.8900 -0.1328 7.9122 37 1 -1.4231 -1.3445 5.8360 38 1 0.1875 -1.3638 3.9736 39 1 0.9230 -0.4200 2.4544 40 1 2.0711 0.9188 2.0180 41 1 5.1392 2.5828 -0.0103 42 1 3.9169 5.4699 0.9821 43 1 5.8619 5.6860 -0.3877 44 1 3.7961 7.4759 -1.2428 45 1 3.2407 5.5400 -2.6075 46 1 0.2146 2.3196 0.0093 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79904_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:20 Heat of formation + Delta-G solvation = -71.744125 kcal Electronic energy + Delta-G solvation = -36809.885707 eV Core-core repulsion = 32000.391234 eV Total energy + Delta-G solvation = -4809.494473 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 3.84 seconds Orbital eigenvalues (eV) -42.85474 -41.20950 -40.42495 -39.56925 -38.92761 -38.13233 -37.47455 -37.12684 -33.88448 -32.45386 -32.27140 -31.83863 -30.87057 -29.08421 -27.27376 -26.94781 -26.43111 -24.74568 -23.86792 -23.27586 -22.84074 -21.50764 -20.98985 -19.78568 -19.19895 -18.96537 -18.56581 -18.25058 -18.08621 -17.48566 -17.02376 -16.83908 -16.41383 -16.36582 -16.13505 -15.92753 -15.74773 -15.58048 -15.26797 -15.00548 -14.51357 -14.50174 -14.33866 -14.28671 -14.24751 -13.91310 -13.82478 -13.75363 -13.39396 -13.27345 -13.23473 -13.17655 -13.11744 -12.94418 -12.84395 -12.68511 -12.48828 -12.31715 -12.02779 -12.01374 -11.85393 -11.75997 -11.51812 -11.33143 -10.74891 -10.31078 -9.87229 -9.64383 -9.45299 -4.62990 -1.15524 -0.43459 -0.25947 -0.14269 0.35890 0.44860 0.96068 1.15780 1.56082 1.65995 1.92431 2.09642 2.48285 2.68280 2.78016 2.83791 3.06372 3.16110 3.23376 3.38907 3.45364 3.53539 3.64971 3.75447 3.81431 3.88282 3.91025 4.04793 4.06316 4.07761 4.19647 4.22333 4.23879 4.31894 4.34181 4.37996 4.39416 4.45280 4.52396 4.52820 4.57488 4.60680 4.74230 4.83171 5.01078 5.04092 5.12044 5.12906 5.51625 5.58924 5.66472 5.71543 6.04291 6.38075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.301 6.301 3 C 0.136 3.864 4 C 0.054 3.946 5 O -0.648 6.648 6 S 2.605 3.395 7 O -0.943 6.943 8 O -0.922 6.922 9 C -0.643 4.643 10 H 0.155 0.845 11 C -0.087 4.087 12 C -0.095 4.095 13 H 0.120 0.880 14 C -0.069 4.069 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.020 4.020 22 C -0.060 4.060 23 C -0.061 4.061 24 O -0.541 6.541 25 Si 0.536 3.464 26 C -0.046 4.046 27 Br 0.083 6.917 28 C -0.161 4.161 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.167 0.833 42 H 0.092 0.908 43 H 0.388 0.612 44 H -0.231 1.231 45 H -0.238 1.238 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 1.845 2.199 9.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.214 6.214 3 C 0.087 3.913 4 C 0.011 3.989 5 O -0.607 6.607 6 S 2.699 3.301 7 O -0.942 6.942 8 O -0.920 6.920 9 C -0.750 4.750 10 H 0.173 0.827 11 C -0.126 4.126 12 C -0.113 4.113 13 H 0.138 0.862 14 C -0.069 4.069 15 C -0.131 4.131 16 C -0.134 4.134 17 C -0.140 4.140 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.041 4.041 22 C -0.062 4.062 23 C -0.170 4.170 24 O -0.348 6.348 25 Si 0.432 3.568 26 C -0.126 4.126 27 Br 0.169 6.831 28 C -0.182 4.182 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.185 0.815 42 H 0.110 0.890 43 H 0.237 0.763 44 H -0.154 1.154 45 H -0.161 1.161 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.315 2.167 1.225 8.680 hybrid contribution 0.782 -0.588 0.136 0.988 sum -7.533 1.579 1.361 7.816 Atomic orbital electron populations 1.23375 0.76780 1.05473 1.02471 1.86266 1.22755 1.24523 1.87807 1.18750 0.90115 0.86004 0.96409 1.17359 0.85647 0.83194 1.12665 1.85748 1.72226 1.45235 1.57445 1.05257 0.76274 0.75309 0.73238 1.93648 1.82566 1.45955 1.72000 1.93661 1.55245 1.60702 1.82390 1.32460 1.20976 1.12738 1.08818 0.82742 1.22657 1.03631 0.97684 0.88603 1.22010 0.98552 0.98015 0.92717 0.86178 1.19531 0.94756 0.97911 0.94719 1.21142 0.99768 0.99136 0.93016 1.21208 0.94129 0.99269 0.98812 1.21212 0.97144 0.97737 0.97926 1.21154 0.99456 0.99366 0.93611 1.20978 0.93825 0.99845 0.99018 1.22941 0.98443 0.96569 0.94389 1.20956 1.02527 0.87841 0.92779 1.18930 0.90767 0.95173 1.01375 1.24617 0.87082 0.98302 1.06986 1.86405 1.19735 1.36464 1.92216 0.93998 1.00384 0.80520 0.81907 1.21300 0.93042 0.92146 1.06143 1.96363 1.64408 1.28135 1.94197 1.20966 1.01264 0.88996 1.06954 0.86991 0.91523 0.91399 0.90124 0.87431 0.85774 0.85877 0.86025 0.86016 0.86147 0.87770 0.90433 0.81547 0.89035 0.76338 1.15352 1.16057 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 8.95 101.05 0.90 0.83 16 2 O -0.30 0.56 6.79 -34.20 -0.23 0.33 16 3 C 0.14 -0.04 3.82 -39.12 -0.15 -0.19 16 4 C 0.05 0.13 4.33 -39.12 -0.17 -0.04 16 5 O -0.65 -2.26 9.84 -54.27 -0.53 -2.79 16 6 S 2.61 8.43 5.07 -107.50 -0.55 7.88 16 7 O -0.94 -3.97 14.54 -67.04 -0.97 -4.95 16 8 O -0.92 -6.25 18.09 -67.04 -1.21 -7.46 16 9 C -0.64 0.31 3.39 -25.82 -0.09 0.22 16 10 H 0.15 -0.33 7.85 -51.93 -0.41 -0.74 16 11 C -0.09 0.07 7.15 -25.92 -0.19 -0.11 16 12 C -0.09 0.03 3.58 -90.96 -0.33 -0.29 16 13 H 0.12 0.04 6.84 -51.93 -0.36 -0.31 16 14 C -0.07 0.00 5.29 -104.62 -0.55 -0.55 16 15 C -0.11 -0.04 9.71 -39.58 -0.38 -0.43 16 16 C -0.12 -0.01 10.05 -39.59 -0.40 -0.40 16 17 C -0.12 0.03 10.05 -39.59 -0.40 -0.37 16 18 C -0.12 0.07 10.05 -39.58 -0.40 -0.32 16 19 C -0.12 0.10 8.54 -39.58 -0.34 -0.24 16 20 C -0.09 0.13 4.33 -25.83 -0.11 0.02 16 21 C -0.02 -0.05 8.36 -39.46 -0.33 -0.38 16 22 C -0.06 -0.07 5.16 -104.58 -0.54 -0.61 16 23 C -0.06 -0.03 2.83 36.01 0.10 0.07 16 24 O -0.54 -0.64 11.48 -35.23 -0.40 -1.04 16 25 Si 0.54 0.42 26.81 -169.99 -4.56 -4.14 16 26 C -0.05 0.04 5.81 -39.52 -0.23 -0.19 16 27 Br 0.08 -0.22 27.32 -68.01 -1.86 -2.08 16 28 C -0.16 0.33 8.63 -39.43 -0.34 -0.01 16 29 H 0.11 -0.76 8.14 -51.93 -0.42 -1.18 16 30 H 0.07 -0.45 7.22 -51.93 -0.38 -0.83 16 31 H 0.07 -0.42 7.67 -51.93 -0.40 -0.82 16 32 H 0.08 -0.08 8.10 -51.93 -0.42 -0.50 16 33 H 0.11 -0.23 7.64 -51.93 -0.40 -0.63 16 34 H 0.12 -0.08 8.05 -52.49 -0.42 -0.50 16 35 H 0.12 -0.18 8.06 -52.48 -0.42 -0.60 16 36 H 0.12 -0.21 8.06 -52.49 -0.42 -0.64 16 37 H 0.12 -0.28 8.06 -52.49 -0.42 -0.71 16 38 H 0.12 -0.33 6.73 -52.49 -0.35 -0.68 16 39 H 0.10 -0.36 5.30 -51.93 -0.28 -0.64 16 40 H 0.08 -0.10 4.58 -51.93 -0.24 -0.34 16 41 H 0.17 0.52 7.13 -52.49 -0.37 0.15 16 42 H 0.09 -0.13 7.96 -51.93 -0.41 -0.54 16 43 H 0.39 -1.01 8.74 45.56 0.40 -0.62 16 44 H -0.23 -0.54 7.11 56.52 0.40 -0.14 16 45 H -0.24 -1.01 7.11 56.52 0.40 -0.61 16 46 H 0.16 -0.85 6.30 -52.48 -0.33 -1.18 16 LS Contribution 386.62 15.07 5.83 5.83 Total: 0.00 -9.79 386.62 -13.68 -23.46 By element: Atomic # 1 Polarization: -6.79 SS G_CDS: -5.25 Total: -12.04 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.93 Total: -2.99 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -3.36 Total: -15.92 kcal Atomic # 14 Polarization: 0.42 SS G_CDS: -4.56 Total: -4.14 kcal Atomic # 16 Polarization: 8.43 SS G_CDS: -0.55 Total: 7.88 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -1.86 Total: -2.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -9.79 -13.68 -23.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79904_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.280 kcal (2) G-P(sol) polarization free energy of solvation -9.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.85 seconds