Wall clock time and date at job start Tue Mar 9 2021 12:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.47237 * 2 1 4 4 C 1.86296 * 109.47185 * 239.99987 * 2 1 3 5 5 C 1.86797 * 109.47245 * 119.99879 * 2 1 3 6 6 C 1.38239 * 120.00105 * 89.99753 * 5 2 1 7 7 C 1.38234 * 120.00155 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99746 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99828 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.47029 * 90.00226 * 9 8 7 11 11 C 1.35809 * 117.00215 * 179.97438 * 10 9 8 12 12 C 1.36635 * 120.22402 * 90.00004 * 11 10 9 13 13 C 1.50700 * 119.53854 * 359.70345 * 12 11 10 14 14 O 1.42898 * 109.46668 * 284.99852 * 13 12 11 15 15 Si 1.86297 * 109.47165 * 164.99947 * 13 12 11 16 16 H 1.48498 * 109.47187 * 180.02562 * 15 13 12 17 17 H 1.48503 * 109.47165 * 300.00023 * 15 13 12 18 18 H 1.48497 * 109.47127 * 59.99647 * 15 13 12 19 19 C 1.39243 * 120.92326 * 179.97438 * 12 11 10 20 20 C 1.36131 * 121.06747 * 359.97438 * 19 12 11 21 21 C 1.40570 * 119.76558 * 0.02815 * 20 19 12 22 22 C 1.40511 * 121.26448 * 179.97438 * 21 20 19 23 23 C 1.36139 * 119.64570 * 179.97438 * 22 21 20 24 24 C 1.39316 * 120.97523 * 0.02562 * 23 22 21 25 25 C 1.36174 * 120.97222 * 359.93346 * 24 23 22 26 26 C 1.40369 * 119.66237 * 0.08496 * 25 24 23 27 27 C 1.38237 * 120.00292 * 0.25567 * 8 7 6 28 28 C 1.38232 * 120.00007 * 359.49280 * 27 8 7 29 29 H 1.09002 * 109.47141 * 300.00440 * 1 2 3 30 30 H 1.08998 * 109.47393 * 60.00036 * 1 2 3 31 31 H 1.08996 * 109.46919 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47319 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46900 * 300.00266 * 3 2 1 34 34 H 1.09002 * 109.47414 * 59.99727 * 3 2 1 35 35 H 1.09003 * 109.46927 * 300.00390 * 4 2 1 36 36 H 1.08998 * 109.46973 * 59.99720 * 4 2 1 37 37 H 1.08998 * 109.47357 * 179.97438 * 4 2 1 38 38 H 1.07994 * 119.99813 * 0.02562 * 6 5 2 39 39 H 1.08001 * 119.99821 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47523 * 330.00477 * 9 8 7 41 41 H 1.08998 * 109.47293 * 210.00216 * 9 8 7 42 42 H 1.09002 * 109.47156 * 44.99856 * 13 12 11 43 43 H 0.96705 * 113.99773 * 179.97438 * 14 13 12 44 44 H 1.08004 * 119.46391 * 180.02562 * 19 12 11 45 45 H 1.08000 * 120.12119 * 179.97438 * 20 19 12 46 46 H 1.07993 * 120.17529 * 0.02562 * 22 21 20 47 47 H 1.08000 * 119.51555 * 180.02562 * 23 22 21 48 48 H 1.08005 * 119.51505 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.16539 * 180.02562 * 25 24 23 50 50 H 1.08003 * 119.99854 * 179.72215 * 27 8 7 51 51 H 1.07996 * 120.00601 * 180.23355 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7161 -2.2432 1.4910 7 6 3.1764 -2.8949 2.6199 8 6 3.4058 -2.1840 3.7830 9 6 3.9071 -2.8946 5.0138 10 8 5.3360 -2.8946 5.0150 11 6 5.9517 -3.4993 6.0637 12 6 6.2641 -4.8282 6.0048 13 6 5.9145 -5.6196 4.7709 14 8 4.5093 -5.8785 4.7534 15 14 6.8435 -7.2343 4.7849 16 1 6.4995 -8.0139 3.5687 17 1 8.3038 -6.9652 4.8031 18 1 6.4682 -8.0108 5.9938 19 6 6.8958 -5.4627 7.0712 20 6 7.2212 -4.7790 8.2025 21 6 6.9168 -3.4103 8.3027 22 6 7.2379 -2.6744 9.4557 23 6 6.9284 -1.3500 9.5172 24 6 6.2964 -0.7112 8.4527 25 6 5.9712 -1.3929 7.3195 26 6 6.2744 -2.7599 7.2201 27 6 3.1699 -0.8224 3.8189 28 6 2.7146 -0.1698 2.6886 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5740 1.7565 -0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2704 0.8900 35 1 2.1206 -1.9059 -1.5211 36 1 2.1206 -0.3644 -2.4110 37 1 3.5740 -0.8778 -1.5214 38 1 2.5364 -2.7985 0.5824 39 1 3.3559 -3.9595 2.5932 40 1 3.5438 -3.9223 5.0134 41 1 3.5430 -2.3809 5.9036 42 1 6.1900 -5.0496 3.8835 43 1 4.2122 -6.3850 3.9850 44 1 7.1322 -6.5141 6.9992 45 1 7.7106 -5.2866 9.0206 46 1 7.7283 -3.1565 10.2884 47 1 7.1765 -0.7863 10.4044 48 1 6.0614 0.3403 8.5269 49 1 5.4818 -0.8846 6.5020 50 1 3.3449 -0.2679 4.7291 51 1 2.5338 0.8946 2.7155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10544690_9276060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:37 Heat of formation + Delta-G solvation = -44.688031 kcal Electronic energy + Delta-G solvation = -30192.644667 eV Core-core repulsion = 26338.140524 eV Total energy + Delta-G solvation = -3854.504143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80705 -40.13315 -39.07366 -37.98021 -36.79804 -33.45802 -32.37321 -31.94100 -31.80705 -29.99848 -29.53812 -28.43018 -28.40235 -27.18694 -26.41601 -24.35863 -23.39397 -22.86954 -22.61919 -21.98434 -19.08128 -18.60230 -18.40421 -17.69328 -17.59164 -16.75478 -16.36870 -16.22725 -15.94696 -15.65830 -15.35310 -15.09301 -14.91899 -14.60873 -14.31917 -14.28456 -14.18018 -14.14706 -14.09810 -13.93934 -13.84248 -13.77246 -13.43181 -13.34020 -13.24782 -13.21571 -13.09135 -12.84112 -12.51085 -12.32811 -12.08827 -12.01656 -11.94674 -11.83439 -11.63609 -11.03672 -10.89202 -10.78892 -10.75835 -10.68472 -10.30381 -9.70675 -9.61889 -9.57162 -8.70332 -0.51931 -0.01999 0.29083 0.62015 1.01736 1.13439 1.42535 1.48583 1.73684 1.86546 1.86633 1.89909 1.98277 2.56105 2.64969 3.07338 3.18345 3.39351 3.67683 3.79947 3.88674 3.97583 4.00171 4.05381 4.15373 4.20159 4.34023 4.35954 4.38545 4.41139 4.49919 4.57878 4.65307 4.70368 4.71432 4.72914 4.74985 4.76652 4.76851 4.77926 4.84595 4.97503 5.07411 5.10146 5.16125 5.18578 5.23494 5.41406 5.43718 5.51612 5.52193 5.54807 5.59776 5.62664 5.67768 5.68672 5.75159 5.98953 6.19151 6.53055 6.60917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.364 4.364 6 C -0.093 4.093 7 C -0.105 4.105 8 C -0.081 4.081 9 C 0.103 3.897 10 O -0.323 6.323 11 C 0.141 3.859 12 C -0.096 4.096 13 C -0.078 4.078 14 O -0.544 6.544 15 Si 0.947 3.053 16 H -0.256 1.256 17 H -0.248 1.248 18 H -0.248 1.248 19 C -0.110 4.110 20 C -0.103 4.103 21 C -0.038 4.038 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.095 4.095 26 C -0.070 4.070 27 C -0.110 4.110 28 C -0.092 4.092 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.378 0.622 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.131 0.869 47 H 0.126 0.874 48 H 0.125 0.875 49 H 0.129 0.871 50 H 0.118 0.882 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -0.033 -0.683 0.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.405 4.405 6 C -0.111 4.111 7 C -0.123 4.123 8 C -0.081 4.081 9 C 0.030 3.970 10 O -0.241 6.241 11 C 0.097 3.903 12 C -0.097 4.097 13 C -0.188 4.188 14 O -0.350 6.350 15 Si 0.770 3.230 16 H -0.180 1.180 17 H -0.171 1.171 18 H -0.171 1.171 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.038 4.038 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.113 4.113 26 C -0.070 4.070 27 C -0.128 4.128 28 C -0.110 4.110 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.226 0.774 44 H 0.145 0.855 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.144 0.856 48 H 0.143 0.857 49 H 0.147 0.853 50 H 0.136 0.864 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.122 -0.424 -0.216 0.492 hybrid contribution -0.235 0.008 -0.134 0.271 sum -0.357 -0.416 -0.350 0.650 Atomic orbital electron populations 1.26122 1.20481 1.04562 1.04463 0.78192 0.66840 0.66144 0.63812 1.26135 1.06483 1.18587 1.04523 1.26130 1.06476 1.08032 1.15058 1.27415 1.03463 0.99547 1.10124 1.21069 0.97655 0.94656 0.97707 1.21128 0.98795 0.99874 0.92495 1.19557 0.99889 0.93961 0.94671 1.21802 0.78601 1.01346 0.95282 1.85988 1.19665 1.76959 1.41447 1.18063 0.95646 0.89805 0.86829 1.19194 1.01955 0.92939 0.95585 1.24672 0.88152 1.07720 0.98238 1.86471 1.21136 1.77770 1.49640 0.85752 0.79865 0.76377 0.81028 1.17979 1.17111 1.17137 1.20645 0.99071 0.99981 0.93027 1.20992 0.99971 0.92986 0.98147 1.18014 0.98164 0.93834 0.93799 1.21053 1.00191 0.94502 0.96887 1.20948 0.98013 0.94916 0.98808 1.20926 0.98788 1.00342 0.93490 1.20968 0.99251 0.92818 0.98232 1.18341 1.00805 0.94635 0.93265 1.21146 0.99185 0.93749 0.98740 1.21053 0.97623 0.99618 0.92687 0.91184 0.91065 0.91173 0.91050 0.90993 0.91188 0.91180 0.90992 0.91050 0.86076 0.86117 0.89530 0.92564 0.90197 0.77404 0.85474 0.84744 0.85122 0.85628 0.85675 0.85285 0.86405 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.58 8.65 101.05 0.87 1.46 16 2 Si 1.06 -2.33 12.32 -169.99 -2.09 -4.42 16 3 C -0.45 0.65 8.53 101.05 0.86 1.51 16 4 C -0.45 0.70 8.53 101.05 0.86 1.56 16 5 C -0.36 -0.09 4.59 -39.58 -0.18 -0.27 16 6 C -0.09 -0.06 9.29 -39.58 -0.37 -0.43 16 7 C -0.10 -0.15 9.70 -39.58 -0.38 -0.53 16 8 C -0.08 -0.18 5.51 -104.62 -0.58 -0.75 16 9 C 0.10 0.24 6.12 36.01 0.22 0.46 16 10 O -0.32 -1.19 8.50 -19.14 -0.16 -1.35 16 11 C 0.14 0.53 5.67 -39.11 -0.22 0.31 16 12 C -0.10 -0.27 5.27 -104.83 -0.55 -0.82 16 13 C -0.08 -0.06 2.32 36.01 0.08 0.03 16 14 O -0.54 -0.06 10.68 -35.23 -0.38 -0.43 16 15 Si 0.95 -0.07 25.46 -169.99 -4.33 -4.40 16 16 H -0.26 0.03 7.11 56.52 0.40 0.43 16 17 H -0.25 -0.21 7.11 56.52 0.40 0.20 16 18 H -0.25 -0.17 6.70 56.52 0.38 0.21 16 19 C -0.11 -0.22 8.56 -39.97 -0.34 -0.56 16 20 C -0.10 -0.16 9.77 -39.46 -0.39 -0.55 16 21 C -0.04 -0.10 5.74 -106.84 -0.61 -0.72 16 22 C -0.11 -0.12 9.77 -39.48 -0.39 -0.51 16 23 C -0.11 -0.08 9.95 -39.93 -0.40 -0.48 16 24 C -0.12 -0.14 9.95 -39.92 -0.40 -0.54 16 25 C -0.09 -0.23 9.56 -39.52 -0.38 -0.61 16 26 C -0.07 -0.25 5.75 -106.73 -0.61 -0.86 16 27 C -0.11 -0.19 9.70 -39.58 -0.38 -0.58 16 28 C -0.09 -0.08 9.29 -39.58 -0.37 -0.45 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 35 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 38 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 39 H 0.12 -0.02 8.06 -52.49 -0.42 -0.45 16 40 H 0.09 0.19 5.86 -51.93 -0.30 -0.11 16 41 H 0.06 0.11 8.08 -51.93 -0.42 -0.31 16 42 H 0.08 0.02 7.77 -51.93 -0.40 -0.38 16 43 H 0.38 -1.56 8.74 45.56 0.40 -1.16 16 44 H 0.13 0.05 4.79 -52.48 -0.25 -0.20 16 45 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 46 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 47 H 0.13 -0.17 8.06 -52.49 -0.42 -0.60 16 48 H 0.13 -0.11 8.06 -52.48 -0.42 -0.53 16 49 H 0.13 0.23 7.62 -52.49 -0.40 -0.17 16 50 H 0.12 0.05 8.06 -52.48 -0.42 -0.37 16 51 H 0.12 -0.12 7.43 -52.49 -0.39 -0.51 16 LS Contribution 417.29 15.07 6.29 6.29 Total: 0.00 -6.36 417.29 -11.53 -17.88 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -7.21 Total: -10.23 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.65 Total: -3.34 kcal Atomic # 8 Polarization: -1.25 SS G_CDS: -0.54 Total: -1.78 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: -6.42 Total: -8.82 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -6.36 -11.53 -17.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_9276060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.803 kcal (2) G-P(sol) polarization free energy of solvation -6.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds