Wall clock time and date at job start Tue Mar 9 2021 12:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.47237 * 2 1 4 4 C 1.86296 * 109.47185 * 239.99987 * 2 1 3 5 5 C 1.86797 * 109.47245 * 119.99879 * 2 1 3 6 6 C 1.38239 * 120.00105 * 89.99753 * 5 2 1 7 7 C 1.38234 * 120.00155 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99746 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99828 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.47029 * 90.00226 * 9 8 7 11 11 C 1.35809 * 117.00215 * 179.97438 * 10 9 8 12 12 C 1.36635 * 120.22402 * 90.00004 * 11 10 9 13 13 C 1.50700 * 119.53854 * 359.70345 * 12 11 10 14 14 O 1.42898 * 109.46668 * 284.99852 * 13 12 11 15 15 Si 1.86297 * 109.47165 * 164.99947 * 13 12 11 16 16 H 1.48498 * 109.47187 * 180.02562 * 15 13 12 17 17 H 1.48503 * 109.47165 * 300.00023 * 15 13 12 18 18 H 1.48497 * 109.47127 * 59.99647 * 15 13 12 19 19 C 1.39243 * 120.92326 * 179.97438 * 12 11 10 20 20 C 1.36131 * 121.06747 * 359.97438 * 19 12 11 21 21 C 1.40570 * 119.76558 * 0.02815 * 20 19 12 22 22 C 1.40511 * 121.26448 * 179.97438 * 21 20 19 23 23 C 1.36139 * 119.64570 * 179.97438 * 22 21 20 24 24 C 1.39316 * 120.97523 * 0.02562 * 23 22 21 25 25 C 1.36174 * 120.97222 * 359.93346 * 24 23 22 26 26 C 1.40369 * 119.66237 * 0.08496 * 25 24 23 27 27 C 1.38237 * 120.00292 * 0.25567 * 8 7 6 28 28 C 1.38232 * 120.00007 * 359.49280 * 27 8 7 29 29 H 1.09002 * 109.47141 * 300.00440 * 1 2 3 30 30 H 1.08998 * 109.47393 * 60.00036 * 1 2 3 31 31 H 1.08996 * 109.46919 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47319 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46900 * 300.00266 * 3 2 1 34 34 H 1.09002 * 109.47414 * 59.99727 * 3 2 1 35 35 H 1.09003 * 109.46927 * 300.00390 * 4 2 1 36 36 H 1.08998 * 109.46973 * 59.99720 * 4 2 1 37 37 H 1.08998 * 109.47357 * 179.97438 * 4 2 1 38 38 H 1.07994 * 119.99813 * 0.02562 * 6 5 2 39 39 H 1.08001 * 119.99821 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47523 * 330.00477 * 9 8 7 41 41 H 1.08998 * 109.47293 * 210.00216 * 9 8 7 42 42 H 1.09002 * 109.47156 * 44.99856 * 13 12 11 43 43 H 0.96705 * 113.99773 * 179.97438 * 14 13 12 44 44 H 1.08004 * 119.46391 * 180.02562 * 19 12 11 45 45 H 1.08000 * 120.12119 * 179.97438 * 20 19 12 46 46 H 1.07993 * 120.17529 * 0.02562 * 22 21 20 47 47 H 1.08000 * 119.51555 * 180.02562 * 23 22 21 48 48 H 1.08005 * 119.51505 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.16539 * 180.02562 * 25 24 23 50 50 H 1.08003 * 119.99854 * 179.72215 * 27 8 7 51 51 H 1.07996 * 120.00601 * 180.23355 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7161 -2.2432 1.4910 7 6 3.1764 -2.8949 2.6199 8 6 3.4058 -2.1840 3.7830 9 6 3.9071 -2.8946 5.0138 10 8 5.3360 -2.8946 5.0150 11 6 5.9517 -3.4993 6.0637 12 6 6.2641 -4.8282 6.0048 13 6 5.9145 -5.6196 4.7709 14 8 4.5093 -5.8785 4.7534 15 14 6.8435 -7.2343 4.7849 16 1 6.4995 -8.0139 3.5687 17 1 8.3038 -6.9652 4.8031 18 1 6.4682 -8.0108 5.9938 19 6 6.8958 -5.4627 7.0712 20 6 7.2212 -4.7790 8.2025 21 6 6.9168 -3.4103 8.3027 22 6 7.2379 -2.6744 9.4557 23 6 6.9284 -1.3500 9.5172 24 6 6.2964 -0.7112 8.4527 25 6 5.9712 -1.3929 7.3195 26 6 6.2744 -2.7599 7.2201 27 6 3.1699 -0.8224 3.8189 28 6 2.7146 -0.1698 2.6886 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5740 1.7565 -0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2704 0.8900 35 1 2.1206 -1.9059 -1.5211 36 1 2.1206 -0.3644 -2.4110 37 1 3.5740 -0.8778 -1.5214 38 1 2.5364 -2.7985 0.5824 39 1 3.3559 -3.9595 2.5932 40 1 3.5438 -3.9223 5.0134 41 1 3.5430 -2.3809 5.9036 42 1 6.1900 -5.0496 3.8835 43 1 4.2122 -6.3850 3.9850 44 1 7.1322 -6.5141 6.9992 45 1 7.7106 -5.2866 9.0206 46 1 7.7283 -3.1565 10.2884 47 1 7.1765 -0.7863 10.4044 48 1 6.0614 0.3403 8.5269 49 1 5.4818 -0.8846 6.5020 50 1 3.3449 -0.2679 4.7291 51 1 2.5338 0.8946 2.7155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10544690_9276060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:36 Heat of formation + Delta-G solvation = -33.140128 kcal Electronic energy + Delta-G solvation = -30192.143913 eV Core-core repulsion = 26338.140524 eV Total energy + Delta-G solvation = -3854.003389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.91751 -40.20418 -39.16010 -38.05506 -36.84539 -33.54818 -32.45762 -32.01942 -31.85094 -30.08198 -29.41656 -28.29095 -28.26662 -27.27898 -26.50709 -24.45356 -23.44256 -22.95250 -22.72407 -22.06469 -19.20364 -18.65958 -18.46175 -17.75944 -17.67095 -16.83810 -16.45304 -16.29124 -15.97724 -15.72420 -15.42460 -15.16803 -14.99328 -14.63683 -14.35469 -14.34459 -14.20971 -14.06901 -14.03752 -13.97733 -13.80880 -13.70922 -13.41930 -13.35768 -13.12533 -13.10888 -12.96440 -12.86838 -12.55431 -12.39314 -12.14407 -12.06408 -12.00109 -11.87909 -11.67710 -10.96501 -10.91557 -10.80228 -10.75385 -10.75022 -10.31128 -9.77665 -9.68822 -9.66935 -8.81466 -0.63121 -0.13982 0.22630 0.55058 0.90130 1.11827 1.43143 1.48131 1.80047 1.85152 1.86556 2.03183 2.09106 2.55198 2.67747 2.98852 3.10396 3.36841 3.60964 3.74631 3.80777 3.89880 3.92657 3.99274 4.11095 4.18185 4.25415 4.29169 4.32819 4.33439 4.42451 4.54193 4.56907 4.66393 4.75510 4.84870 4.85280 4.87554 4.88981 4.89851 4.90629 4.91380 5.01123 5.04085 5.07126 5.10831 5.19431 5.31288 5.43374 5.51174 5.52814 5.59051 5.59484 5.59875 5.66186 5.68127 5.71635 5.92973 6.15525 6.43637 6.75035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.125 2.875 3 C -0.463 4.463 4 C -0.461 4.461 5 C -0.376 4.376 6 C -0.103 4.103 7 C -0.117 4.117 8 C -0.098 4.098 9 C 0.109 3.891 10 O -0.333 6.333 11 C 0.116 3.884 12 C -0.107 4.107 13 C -0.081 4.081 14 O -0.556 6.556 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.262 1.262 18 H -0.256 1.256 19 C -0.125 4.125 20 C -0.101 4.101 21 C -0.058 4.058 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.089 4.089 27 C -0.127 4.127 28 C -0.103 4.103 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.396 0.604 44 H 0.141 0.859 45 H 0.161 0.839 46 H 0.155 0.845 47 H 0.150 0.850 48 H 0.144 0.856 49 H 0.125 0.875 50 H 0.121 0.879 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 -0.157 -0.709 0.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.312 2.688 3 C -0.570 4.570 4 C -0.568 4.568 5 C -0.415 4.415 6 C -0.120 4.120 7 C -0.135 4.135 8 C -0.098 4.098 9 C 0.036 3.964 10 O -0.251 6.251 11 C 0.072 3.928 12 C -0.107 4.107 13 C -0.191 4.191 14 O -0.365 6.365 15 Si 0.809 3.191 16 H -0.176 1.176 17 H -0.186 1.186 18 H -0.181 1.181 19 C -0.143 4.143 20 C -0.119 4.119 21 C -0.058 4.058 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.090 4.090 27 C -0.145 4.145 28 C -0.121 4.121 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.246 0.754 44 H 0.158 0.842 45 H 0.179 0.821 46 H 0.173 0.827 47 H 0.168 0.832 48 H 0.161 0.839 49 H 0.143 0.857 50 H 0.139 0.861 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.073 -0.553 -0.243 0.609 hybrid contribution -0.263 0.083 -0.098 0.293 sum -0.336 -0.471 -0.342 0.672 Atomic orbital electron populations 1.26269 1.21450 1.04516 1.04555 0.77195 0.65283 0.64583 0.61692 1.26288 1.06330 1.19533 1.04841 1.26256 1.06350 1.08545 1.15650 1.28061 1.02636 0.99727 1.11077 1.21404 0.97305 0.95142 0.98172 1.21367 0.98952 1.00598 0.92615 1.19671 1.00744 0.94385 0.94990 1.21734 0.78248 1.01094 0.95302 1.85969 1.20182 1.77166 1.41740 1.18281 0.96747 0.90501 0.87254 1.19533 1.01676 0.92979 0.96561 1.24774 0.88649 1.08282 0.97348 1.86429 1.20849 1.78303 1.50909 0.85203 0.78345 0.75036 0.80556 1.17561 1.18601 1.18078 1.20880 0.99488 1.00728 0.93156 1.21341 0.99139 0.92689 0.98683 1.18318 0.98667 0.94628 0.94236 1.21388 0.99720 0.94751 0.96936 1.21280 0.97547 0.95119 0.99411 1.21225 0.97930 1.01253 0.93074 1.21044 1.00429 0.92855 0.98993 1.18603 1.01364 0.95240 0.93763 1.21346 0.99742 0.93896 0.99499 1.21353 0.97508 1.00606 0.92644 0.91472 0.90612 0.91309 0.91449 0.90596 0.91000 0.90771 0.90606 0.91389 0.84086 0.85092 0.89797 0.93169 0.90377 0.75396 0.84182 0.82122 0.82708 0.83205 0.83860 0.85700 0.86075 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.42 8.65 113.37 0.98 2.41 16 2 Si 1.13 -5.49 12.32 68.60 0.85 -4.65 16 3 C -0.46 1.52 8.53 113.37 0.97 2.48 16 4 C -0.46 1.76 8.53 113.37 0.97 2.73 16 5 C -0.38 -0.28 4.59 22.27 0.10 -0.18 16 6 C -0.10 -0.17 9.29 22.27 0.21 0.04 16 7 C -0.12 -0.48 9.70 22.27 0.22 -0.26 16 8 C -0.10 -0.63 5.51 -19.87 -0.11 -0.73 16 9 C 0.11 0.78 6.12 71.24 0.44 1.22 16 10 O -0.33 -3.33 8.50 -91.40 -0.78 -4.11 16 11 C 0.12 1.14 5.67 22.57 0.13 1.27 16 12 C -0.11 -0.78 5.27 -20.00 -0.11 -0.88 16 13 C -0.08 -0.21 2.32 71.24 0.17 -0.05 16 14 O -0.56 -0.71 10.68 -148.98 -1.59 -2.30 16 15 Si 0.99 0.07 25.46 68.60 1.75 1.82 16 16 H -0.25 0.20 7.11 99.48 0.71 0.90 16 17 H -0.26 -0.57 7.11 99.48 0.71 0.14 16 18 H -0.26 -0.35 6.70 99.48 0.67 0.32 16 19 C -0.12 -0.60 8.56 22.02 0.19 -0.41 16 20 C -0.10 -0.34 9.77 22.35 0.22 -0.12 16 21 C -0.06 -0.36 5.74 -21.30 -0.12 -0.48 16 22 C -0.11 -0.21 9.77 22.34 0.22 0.01 16 23 C -0.12 -0.13 9.95 22.04 0.22 0.09 16 24 C -0.12 -0.35 9.95 22.05 0.22 -0.13 16 25 C -0.12 -0.80 9.56 22.31 0.21 -0.59 16 26 C -0.09 -0.82 5.75 -21.23 -0.12 -0.94 16 27 C -0.13 -0.68 9.70 22.27 0.22 -0.46 16 28 C -0.10 -0.27 9.29 22.27 0.21 -0.06 16 29 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 30 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 31 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 32 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 33 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.07 -0.26 7.69 -2.39 -0.02 -0.27 16 35 H 0.07 -0.33 7.69 -2.39 -0.02 -0.35 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 38 H 0.14 -0.45 7.43 -2.91 -0.02 -0.47 16 39 H 0.13 0.10 8.06 -2.91 -0.02 0.08 16 40 H 0.08 0.58 5.86 -2.39 -0.01 0.56 16 41 H 0.05 0.36 8.08 -2.39 -0.02 0.34 16 42 H 0.08 0.18 7.77 -2.39 -0.02 0.16 16 43 H 0.40 -3.05 8.74 -74.05 -0.65 -3.70 16 44 H 0.14 0.16 4.79 -2.91 -0.01 0.15 16 45 H 0.16 -0.48 8.06 -2.91 -0.02 -0.51 16 46 H 0.16 -0.58 8.06 -2.91 -0.02 -0.60 16 47 H 0.15 -0.64 8.06 -2.91 -0.02 -0.66 16 48 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 49 H 0.13 0.81 7.62 -2.91 -0.02 0.79 16 50 H 0.12 0.40 8.06 -2.91 -0.02 0.38 16 51 H 0.14 -0.23 7.43 -2.91 -0.02 -0.25 16 Total: 0.00 -15.89 417.29 6.63 -9.26 By element: Atomic # 1 Polarization: -5.96 SS G_CDS: 0.99 Total: -4.97 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.41 Total: 4.94 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -2.37 Total: -6.41 kcal Atomic # 14 Polarization: -5.42 SS G_CDS: 2.59 Total: -2.83 kcal Total: -15.89 6.63 -9.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10544690_9276060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.876 kcal (2) G-P(sol) polarization free energy of solvation -15.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds