Wall clock time and date at job start Tue Mar 9 2021 12:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86301 * 109.47183 * 2 1 4 4 C 1.50693 * 109.47211 * 120.00293 * 2 1 3 5 5 C 1.38716 * 119.99888 * 74.99692 * 4 2 1 6 6 O 1.35916 * 120.02961 * 359.97438 * 5 4 2 7 7 C 1.42899 * 116.99790 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46843 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.46954 * 180.02562 * 8 7 6 10 10 O 1.42967 * 109.47087 * 300.00112 * 8 7 6 11 11 C 1.43093 * 113.76927 * 178.79947 * 10 8 7 12 12 C 1.53262 * 108.94191 * 302.02757 * 11 10 8 13 13 H 1.09009 * 109.57281 * 294.71786 * 12 11 10 14 14 N 1.46500 * 109.57725 * 174.33639 * 12 11 10 15 15 C 1.34526 * 124.45545 * 300.33743 * 14 12 11 16 16 O 1.21441 * 125.71413 * 0.03970 * 15 14 12 17 17 C 1.47822 * 108.57771 * 179.90346 * 15 14 12 18 18 C 1.40945 * 105.87932 * 0.35147 * 17 15 14 19 19 C 1.38566 * 119.82119 * 179.79428 * 18 17 15 20 20 C 1.38612 * 119.71762 * 0.02562 * 19 18 17 21 21 C 1.38228 * 120.46225 * 359.97438 * 20 19 18 22 22 C 1.38566 * 134.29786 * 180.12405 * 17 15 14 23 23 C 1.34520 * 124.46394 * 120.63634 * 14 12 11 24 24 O 1.21443 * 125.70851 * 359.94770 * 23 14 12 25 25 C 1.53255 * 108.84421 * 54.52512 * 12 11 10 26 26 O 1.42965 * 109.47388 * 60.00024 * 8 7 6 27 27 C 1.38709 * 119.93793 * 180.25117 * 5 4 2 28 28 C 1.38329 * 119.93341 * 359.45085 * 27 5 4 29 29 F 1.35101 * 120.00442 * 180.24922 * 28 27 5 30 30 C 1.38619 * 119.99579 * 0.55067 * 28 27 5 31 31 Cl 1.73592 * 119.96955 * 179.70066 * 30 28 27 32 32 C 1.38191 * 119.99599 * 254.97593 * 4 2 1 33 33 H 0.96696 * 114.00197 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46613 * 239.99997 * 2 1 3 35 35 H 1.48497 * 109.99947 * 58.68528 * 3 2 1 36 36 H 1.48494 * 109.99758 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.47164 * 60.00382 * 7 6 5 38 38 H 1.09004 * 109.46968 * 299.99972 * 7 6 5 39 39 H 1.08994 * 109.56301 * 61.86574 * 11 10 8 40 40 H 1.08999 * 109.55809 * 182.08250 * 11 10 8 41 41 H 1.07998 * 120.13984 * 179.97438 * 19 18 17 42 42 H 1.08000 * 119.76635 * 179.97438 * 20 19 18 43 43 H 1.07998 * 119.77395 * 180.02562 * 21 20 19 44 44 H 1.07998 * 120.14092 * 0.28931 * 22 17 15 45 45 H 1.09008 * 109.56074 * 185.63859 * 25 12 11 46 46 H 1.08995 * 109.55941 * 65.31515 * 25 12 11 47 47 H 1.08001 * 120.03725 * 179.70730 * 27 5 4 48 48 H 1.07998 * 119.96684 * 0.04131 * 32 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8694 -2.0941 1.3062 6 8 1.3552 -2.8097 0.2713 7 6 1.3230 -4.2308 0.4179 8 6 0.7162 -4.8593 -0.8381 9 1 0.6912 -5.9433 -0.7261 10 8 -0.6141 -4.3688 -1.0214 11 6 -1.2611 -4.8796 -2.1910 12 6 -0.4194 -4.5226 -3.4211 13 1 -0.4030 -3.4403 -3.5508 14 7 -0.9966 -5.1532 -4.6108 15 6 -1.1583 -6.4796 -4.7664 16 8 -0.8543 -7.3308 -3.9553 17 6 -1.7711 -6.7275 -6.0886 18 6 -1.9403 -5.4589 -6.6791 19 6 -2.4962 -5.3563 -7.9442 20 6 -2.8824 -6.5032 -8.6201 21 6 -2.7165 -7.7473 -8.0410 22 6 -2.1617 -7.8653 -6.7762 23 6 -1.4295 -4.4827 -5.6936 24 8 -1.4049 -3.2771 -5.8375 25 6 1.0089 -5.0361 -3.2095 26 8 1.5117 -4.5155 -1.9751 27 6 2.3273 -2.7464 2.4414 28 6 2.8554 -2.0166 3.4911 29 9 3.3065 -2.6508 4.5955 30 6 2.9161 -0.6339 3.4125 31 17 3.5718 0.2818 4.7335 32 6 2.4542 0.0166 2.2829 33 1 -0.3933 -0.8833 0.0004 34 1 1.7923 -0.5138 -0.8900 35 1 1.5356 2.4770 1.1921 36 1 3.5350 1.7701 -0.0006 37 1 0.7168 -4.4929 1.2850 38 1 2.3374 -4.6047 0.5572 39 1 -1.3530 -5.9629 -2.1137 40 1 -2.2520 -4.4350 -2.2834 41 1 -2.6286 -4.3869 -8.4013 42 1 -3.3161 -6.4241 -9.6060 43 1 -3.0210 -8.6336 -8.5778 44 1 -2.0350 -8.8398 -6.3284 45 1 1.6424 -4.7021 -4.0314 46 1 1.0031 -6.1253 -3.1707 47 1 2.2755 -3.8234 2.5041 48 1 2.5019 1.0939 2.2233 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10548606_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:19 Heat of formation + Delta-G solvation = -165.331663 kcal Electronic energy + Delta-G solvation = -42447.805679 eV Core-core repulsion = 36570.642170 eV Total energy + Delta-G solvation = -5877.163510 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 450.085 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -50.31567 -43.70218 -41.90095 -41.13965 -39.94775 -39.51294 -39.00402 -37.94776 -37.25564 -37.16888 -37.08477 -34.56597 -32.82776 -32.15877 -32.07047 -31.04007 -29.72922 -27.49391 -26.76571 -26.34471 -25.68158 -24.87813 -23.51747 -23.46050 -22.94688 -22.32327 -21.01285 -20.06169 -19.15266 -18.99185 -18.93794 -18.71697 -18.39627 -17.75249 -17.68273 -17.66785 -17.36076 -17.14155 -17.06632 -16.72337 -16.58128 -16.44551 -16.15464 -16.00410 -15.88386 -15.50674 -15.47881 -15.46822 -15.31959 -15.06034 -14.77528 -14.69888 -14.59364 -14.30200 -14.21134 -13.99858 -13.80278 -13.33773 -13.29161 -13.23580 -13.11820 -12.70065 -12.65592 -12.42378 -12.36555 -12.26935 -12.22925 -11.86569 -11.69783 -11.62944 -11.44605 -11.12047 -10.96911 -10.85318 -10.37660 -10.25498 -10.24169 -9.52168 -4.87338 -1.10773 -0.45887 -0.34679 -0.05732 0.73237 0.88160 0.89219 1.29785 1.58517 1.62240 1.67322 1.86699 1.95395 2.18280 2.24848 2.44981 2.57601 2.65957 3.07792 3.12746 3.17212 3.23428 3.32715 3.46094 3.53201 3.54519 3.68964 3.72946 3.82881 3.88823 3.94423 4.04552 4.05129 4.06361 4.09919 4.15122 4.18229 4.21016 4.25862 4.29868 4.44011 4.44190 4.45753 4.54400 4.56888 4.72733 4.80742 4.88147 5.04757 5.18556 5.25580 5.33959 5.40852 5.65594 5.71520 5.89490 5.92633 6.35434 6.55999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.078 4.078 3 Si 0.799 3.201 4 C -0.149 4.149 5 C 0.184 3.816 6 O -0.291 6.291 7 C 0.063 3.937 8 C 0.238 3.762 9 H 0.107 0.893 10 O -0.381 6.381 11 C 0.053 3.947 12 C 0.076 3.924 13 H 0.119 0.881 14 N -0.569 5.569 15 C 0.577 3.423 16 O -0.481 6.481 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.045 4.045 20 C -0.084 4.084 21 C -0.085 4.085 22 C -0.043 4.043 23 C 0.576 3.424 24 O -0.487 6.487 25 C 0.052 3.948 26 O -0.383 6.383 27 C -0.224 4.224 28 C 0.149 3.851 29 F -0.124 7.124 30 C -0.119 4.119 31 Cl -0.050 7.050 32 C -0.055 4.055 33 H 0.374 0.626 34 H 0.088 0.912 35 H -0.279 1.279 36 H -0.261 1.261 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.156 0.844 45 H 0.112 0.888 46 H 0.074 0.926 47 H 0.182 0.818 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -7.538 -9.675 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.186 4.186 3 Si 0.699 3.301 4 C -0.151 4.151 5 C 0.136 3.864 6 O -0.203 6.203 7 C -0.011 4.011 8 C 0.143 3.857 9 H 0.124 0.876 10 O -0.300 6.300 11 C -0.025 4.025 12 C -0.026 4.026 13 H 0.137 0.863 14 N -0.313 5.313 15 C 0.368 3.632 16 O -0.353 6.353 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.064 4.064 20 C -0.102 4.102 21 C -0.102 4.102 22 C -0.061 4.061 23 C 0.367 3.633 24 O -0.359 6.359 25 C -0.025 4.025 26 O -0.303 6.303 27 C -0.243 4.243 28 C 0.128 3.872 29 F -0.102 7.102 30 C -0.146 4.146 31 Cl -0.022 7.022 32 C -0.073 4.073 33 H 0.223 0.777 34 H 0.106 0.894 35 H -0.206 1.206 36 H -0.186 1.186 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.171 0.829 42 H 0.193 0.807 43 H 0.193 0.807 44 H 0.173 0.827 45 H 0.130 0.870 46 H 0.093 0.907 47 H 0.200 0.800 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.930 -5.727 -8.664 10.791 hybrid contribution 0.258 -1.754 1.413 2.267 sum -2.672 -7.481 -7.251 10.755 Atomic orbital electron populations 1.86681 1.16985 1.34160 1.97032 1.25313 0.84814 1.14020 0.94484 0.92236 0.76847 0.74888 0.86121 1.19850 1.05315 0.91368 0.98560 1.18484 0.91158 0.90273 0.86467 1.86227 1.76221 1.20356 1.37483 1.23354 1.03692 0.77510 0.96548 1.23895 0.78142 0.97607 0.86021 0.87552 1.88219 1.27742 1.71275 1.42753 1.22994 0.96550 1.00375 0.82544 1.22587 0.95277 1.00630 0.84105 0.86264 1.46454 1.58022 1.08924 1.17949 1.18702 0.76272 0.81076 0.87113 1.90789 1.47857 1.48239 1.48460 1.20463 1.05333 0.95911 0.94644 1.20444 1.05737 0.92801 0.97311 1.21162 0.92983 1.01600 0.90609 1.21953 0.95985 0.90940 1.01311 1.21962 0.94926 0.99851 0.93507 1.21159 0.93396 0.97505 0.94083 1.18760 0.75489 0.87245 0.81810 1.90833 1.52069 1.14447 1.78553 1.23002 0.92625 0.99306 0.87587 1.88229 1.49868 1.76908 1.15245 1.21386 1.07061 1.02919 0.92969 1.17166 0.97357 0.88195 0.84463 1.91569 1.86315 1.81796 1.50543 1.20863 1.09168 0.90963 0.93644 1.98397 1.84449 1.73405 1.45903 1.20709 0.95705 1.00399 0.90498 0.77681 0.89422 1.20591 1.18612 0.86650 0.86871 0.90785 0.86833 0.82908 0.80747 0.80697 0.82657 0.86975 0.90739 0.80046 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.94 12.65 -148.98 -1.89 -4.82 16 2 C -0.08 -0.29 2.33 71.23 0.17 -0.12 16 3 Si 0.80 1.58 30.40 68.60 2.09 3.67 16 4 C -0.15 -0.75 5.28 -19.76 -0.10 -0.85 16 5 C 0.18 0.46 6.62 22.50 0.15 0.61 16 6 O -0.29 -0.33 8.82 -73.02 -0.64 -0.97 16 7 C 0.06 -0.27 4.83 71.98 0.35 0.07 16 8 C 0.24 -0.39 3.59 71.98 0.26 -0.13 16 9 H 0.11 -0.60 8.14 -2.38 -0.02 -0.62 16 10 O -0.38 -0.49 10.43 -121.89 -1.27 -1.76 16 11 C 0.05 0.01 6.32 72.07 0.46 0.47 16 12 C 0.08 0.10 3.07 45.16 0.14 0.24 16 13 H 0.12 0.43 7.60 -2.38 -0.02 0.41 16 14 N -0.57 -1.07 2.53 -739.56 -1.87 -2.94 16 15 C 0.58 1.04 7.35 86.82 0.64 1.68 16 16 O -0.48 -2.32 15.16 -3.53 -0.05 -2.37 16 17 C -0.16 0.24 6.41 -20.00 -0.13 0.11 16 18 C -0.16 0.12 6.40 -20.00 -0.13 -0.01 16 19 C -0.04 0.26 10.09 22.44 0.23 0.49 16 20 C -0.08 0.91 10.04 22.36 0.22 1.14 16 21 C -0.08 0.94 10.04 22.36 0.22 1.17 16 22 C -0.04 0.29 10.09 22.44 0.23 0.51 16 23 C 0.58 2.14 8.02 86.82 0.70 2.84 16 24 O -0.49 -4.53 17.44 -3.54 -0.06 -4.59 16 25 C 0.05 0.03 6.32 72.07 0.46 0.48 16 26 O -0.38 -0.72 10.43 -121.89 -1.27 -1.99 16 27 C -0.22 -0.19 9.01 22.40 0.20 0.01 16 28 C 0.15 0.79 7.27 22.38 0.16 0.95 16 29 F -0.12 -0.84 16.83 44.97 0.76 -0.08 16 30 C -0.12 -0.85 6.33 22.37 0.14 -0.71 16 31 Cl -0.05 -0.39 28.61 -2.72 -0.08 -0.47 16 32 C -0.05 -0.36 8.43 22.27 0.19 -0.17 16 33 H 0.37 0.97 8.60 -74.06 -0.64 0.33 16 34 H 0.09 0.21 7.83 -2.39 -0.02 0.19 16 35 H -0.28 -1.92 6.81 99.48 0.68 -1.25 16 36 H -0.26 -1.14 7.11 99.48 0.71 -0.43 16 37 H 0.12 -0.97 7.65 -2.39 -0.02 -0.99 16 38 H 0.11 -0.91 7.67 -2.38 -0.02 -0.93 16 39 H 0.07 0.03 6.67 -2.39 -0.02 0.02 16 40 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.15 -1.22 8.06 -2.91 -0.02 -1.24 16 42 H 0.18 -2.91 8.06 -2.91 -0.02 -2.93 16 43 H 0.18 -2.99 8.06 -2.91 -0.02 -3.01 16 44 H 0.16 -1.47 8.06 -2.91 -0.02 -1.50 16 45 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 46 H 0.07 0.05 6.67 -2.39 -0.02 0.03 16 47 H 0.18 -1.02 6.30 -2.91 -0.02 -1.04 16 48 H 0.15 0.89 4.93 -2.91 -0.01 0.87 16 Total: 0.00 -20.50 425.65 0.70 -19.80 By element: Atomic # 1 Polarization: -12.72 SS G_CDS: 0.46 Total: -12.26 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 4.54 Total: 8.79 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -1.87 Total: -2.94 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -5.19 Total: -16.51 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.76 Total: -0.08 kcal Atomic # 14 Polarization: 1.58 SS G_CDS: 2.09 Total: 3.67 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -20.50 0.70 -19.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10548606_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.530 kcal (2) G-P(sol) polarization free energy of solvation -20.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds