Wall clock time and date at job start Tue Mar 9 2021 13:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86306 * 109.46761 * 2 1 4 4 C 1.50698 * 109.47553 * 240.00064 * 2 1 3 5 5 C 1.38129 * 120.00737 * 104.97969 * 4 2 1 6 6 C 1.38247 * 120.08251 * 180.02562 * 5 4 2 7 7 C 1.38477 * 120.08432 * 359.73721 * 6 5 4 8 8 F 1.35099 * 119.99452 * 180.25739 * 7 6 5 9 9 C 1.38381 * 120.00471 * 0.51768 * 7 6 5 10 10 C 1.38676 * 119.91845 * 359.48441 * 9 7 6 11 11 O 1.35896 * 120.04107 * 180.23670 * 10 9 7 12 12 C 1.42901 * 116.99926 * 359.97438 * 11 10 9 13 13 C 1.53003 * 109.47143 * 180.02562 * 12 11 10 14 14 H 1.09002 * 112.84484 * 314.66642 * 13 12 11 15 15 C 1.53782 * 113.61622 * 85.85996 * 13 12 11 16 16 C 1.53962 * 87.01654 * 139.95688 * 15 13 12 17 17 H 1.08992 * 113.53597 * 89.19096 * 16 15 13 18 18 O 1.42896 * 113.73792 * 220.05838 * 16 15 13 19 19 C 1.53776 * 87.11013 * 334.63802 * 16 15 13 20 20 H 0.96704 * 113.99755 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46841 * 119.99550 * 2 1 3 22 22 H 1.48504 * 109.99797 * 179.97438 * 3 2 1 23 23 H 1.48503 * 109.99915 * 301.31350 * 3 2 1 24 24 H 1.08004 * 119.95480 * 0.03618 * 5 4 2 25 25 H 1.08003 * 119.95754 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.04322 * 179.77012 * 9 7 6 27 27 H 1.09001 * 109.47271 * 299.99625 * 12 11 10 28 28 H 1.08994 * 109.47065 * 60.00462 * 12 11 10 29 29 H 1.08998 * 113.61410 * 254.53389 * 15 13 12 30 30 H 1.08996 * 113.60991 * 25.43494 * 15 13 12 31 31 H 0.96701 * 114.00499 * 277.59330 * 18 16 15 32 32 H 1.09003 * 113.62038 * 270.81144 * 19 16 15 33 33 H 1.08998 * 113.61682 * 139.91514 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.4532 0.0162 -2.2829 6 6 2.9141 -0.6338 -3.4126 7 6 2.8588 -2.0153 -3.4897 8 9 3.3145 -2.6490 -4.5924 9 6 2.3319 -2.7465 -2.4396 10 6 1.8695 -2.0946 -1.3063 11 8 1.3560 -2.8105 -0.2716 12 6 1.3225 -4.2314 -0.4192 13 6 0.7155 -4.8605 0.8365 14 1 1.1166 -4.4380 1.7577 15 6 -0.8205 -4.9316 0.8090 16 6 -0.6872 -6.3249 1.4504 17 1 -0.6710 -6.3027 2.5399 18 8 -1.6044 -7.2884 0.9285 19 6 0.7111 -6.3981 0.8147 20 1 -0.3933 -0.8834 -0.0004 21 1 1.7923 -0.5138 0.8901 22 1 3.5349 1.7703 0.0006 23 1 1.5354 2.4771 -1.1922 24 1 2.5013 1.0935 -2.2231 25 1 3.3221 -0.0637 -4.2342 26 1 2.2851 -3.8237 -2.5006 27 1 0.7151 -4.4925 -1.2858 28 1 2.3364 -4.6060 -0.5598 29 1 -1.3031 -4.1973 1.4540 30 1 -1.2386 -4.9523 -0.1974 31 1 -2.4857 -7.2474 1.3244 32 1 0.7125 -6.8206 -0.1901 33 1 1.4631 -6.8462 1.4642 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10564890_11354858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:17 Heat of formation + Delta-G solvation = -110.045822 kcal Electronic energy + Delta-G solvation = -18950.754799 eV Core-core repulsion = 15665.919164 eV Total energy + Delta-G solvation = -3284.835635 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.18451 -41.70279 -40.32756 -38.62907 -37.44129 -36.03971 -32.61646 -31.61075 -29.37460 -26.76716 -26.55705 -24.71728 -23.18613 -22.66765 -20.63974 -19.74906 -18.73482 -18.50658 -17.98588 -17.35009 -17.13854 -16.81301 -16.71224 -16.29809 -15.99908 -15.76517 -15.34837 -15.03225 -14.53133 -14.04371 -14.00553 -13.67920 -13.48653 -13.28009 -12.82861 -12.62629 -12.43633 -12.30855 -12.19459 -11.76892 -11.39828 -11.25107 -11.05547 -10.75827 -10.21207 -9.50375 -4.81096 -0.26105 -0.02864 1.36091 1.65045 1.81607 1.93169 2.20840 2.91839 3.25395 3.39008 3.42176 3.47295 3.53106 3.72884 3.78823 3.82599 3.90537 3.94303 4.08270 4.16301 4.17826 4.33835 4.40748 4.63690 4.68871 4.73006 4.74479 4.78151 4.86560 4.96818 4.99683 5.09827 5.32771 5.41574 6.04871 6.59687 6.85801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.081 4.081 3 Si 0.809 3.191 4 C -0.166 4.166 5 C -0.065 4.065 6 C -0.188 4.188 7 C 0.129 3.871 8 F -0.139 7.139 9 C -0.245 4.245 10 C 0.170 3.830 11 O -0.305 6.305 12 C 0.064 3.936 13 C -0.101 4.101 14 H 0.114 0.886 15 C -0.161 4.161 16 C 0.072 3.928 17 H 0.100 0.900 18 O -0.583 6.583 19 C -0.124 4.124 20 H 0.373 0.627 21 H 0.086 0.914 22 H -0.265 1.265 23 H -0.283 1.283 24 H 0.144 0.856 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.395 0.605 32 H 0.085 0.915 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -0.232 4.612 4.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.189 4.189 3 Si 0.709 3.291 4 C -0.167 4.167 5 C -0.082 4.082 6 C -0.206 4.206 7 C 0.110 3.890 8 F -0.118 7.118 9 C -0.265 4.265 10 C 0.123 3.877 11 O -0.219 6.219 12 C -0.011 4.011 13 C -0.119 4.119 14 H 0.132 0.868 15 C -0.199 4.199 16 C 0.014 3.986 17 H 0.117 0.883 18 O -0.391 6.391 19 C -0.161 4.161 20 H 0.222 0.778 21 H 0.104 0.896 22 H -0.191 1.191 23 H -0.210 1.210 24 H 0.161 0.839 25 H 0.174 0.826 26 H 0.175 0.825 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.245 0.755 32 H 0.103 0.897 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.317 0.841 3.994 4.094 hybrid contribution -0.293 -1.871 -1.077 2.178 sum 0.024 -1.030 2.917 3.094 Atomic orbital electron populations 1.86680 1.17303 1.34047 1.97093 1.25375 0.84576 1.14168 0.94736 0.92267 0.76440 0.74400 0.85946 1.20014 1.06192 0.91168 0.99356 1.20873 0.95493 1.00079 0.91790 1.21240 1.05797 0.92556 1.01038 1.17574 0.97125 0.90829 0.83475 1.91521 1.86491 1.82498 1.51288 1.21382 1.08344 1.02217 0.94512 1.18475 0.92163 0.90444 0.86578 1.86059 1.76779 1.21012 1.38003 1.23084 1.01964 0.76578 0.99452 1.22286 0.96414 0.95238 0.97987 0.86825 1.23765 0.95586 0.98201 1.02336 1.23450 0.89975 0.87472 0.97733 0.88274 1.86479 1.26534 1.58452 1.67681 1.23090 0.96317 0.94104 1.02606 0.77839 0.89585 1.19119 1.21001 0.83866 0.82631 0.82499 0.91144 0.90615 0.89942 0.90063 0.75461 0.89678 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.60 12.65 -148.98 -1.89 -3.49 16 2 C -0.08 -0.12 2.33 71.24 0.17 0.05 16 3 Si 0.81 -0.47 30.40 68.60 2.09 1.61 16 4 C -0.17 -0.67 5.28 -19.76 -0.10 -0.77 16 5 C -0.06 -0.27 8.65 22.25 0.19 -0.07 16 6 C -0.19 -0.74 10.02 22.33 0.22 -0.51 16 7 C 0.13 0.69 7.30 22.36 0.16 0.86 16 8 F -0.14 -0.99 17.27 44.97 0.78 -0.21 16 9 C -0.25 -0.80 9.02 22.41 0.20 -0.60 16 10 C 0.17 0.54 6.62 22.50 0.15 0.69 16 11 O -0.31 -0.13 9.04 -92.38 -0.83 -0.97 16 12 C 0.06 -0.20 4.57 71.98 0.33 0.13 16 13 C -0.10 0.48 4.00 -10.27 -0.04 0.44 16 14 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 15 C -0.16 0.65 7.48 31.18 0.23 0.89 16 16 C 0.07 -0.25 5.21 31.18 0.16 -0.09 16 17 H 0.10 -0.65 8.14 -2.39 -0.02 -0.66 16 18 O -0.58 0.02 13.68 -148.98 -2.04 -2.02 16 19 C -0.12 0.46 7.47 31.12 0.23 0.69 16 20 H 0.37 -0.25 8.60 -74.05 -0.64 -0.89 16 21 H 0.09 -0.06 7.83 -2.38 -0.02 -0.08 16 22 H -0.27 -0.56 7.11 99.48 0.71 0.14 16 23 H -0.28 -1.28 6.81 99.48 0.68 -0.60 16 24 H 0.14 0.34 4.93 -2.91 -0.01 0.32 16 25 H 0.16 0.04 8.06 -2.91 -0.02 0.01 16 26 H 0.16 -0.04 6.30 -2.91 -0.02 -0.06 16 27 H 0.07 -0.23 7.39 -2.39 -0.02 -0.24 16 28 H 0.08 -0.33 7.66 -2.39 -0.02 -0.34 16 29 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.08 -0.15 7.92 -2.39 -0.02 -0.17 16 31 H 0.40 -3.10 9.12 -74.06 -0.68 -3.78 16 32 H 0.08 -0.16 8.10 -2.39 -0.02 -0.18 16 33 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: 0.00 -11.38 283.37 -0.14 -11.52 By element: Atomic # 1 Polarization: -7.99 SS G_CDS: -0.15 Total: -8.15 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 1.91 Total: 1.70 kcal Atomic # 8 Polarization: -1.72 SS G_CDS: -4.76 Total: -6.47 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.78 Total: -0.21 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: 2.09 Total: 1.61 kcal Total: -11.38 -0.14 -11.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10564890_11354858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.522 kcal (2) G-P(sol) polarization free energy of solvation -11.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds