Wall clock time and date at job start Tue Mar 9 2021 13:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47465 * 2 1 4 4 C 1.53002 * 109.47171 * 239.99849 * 2 1 3 5 5 Si 1.86301 * 109.47235 * 120.00444 * 2 1 3 6 6 C 1.86301 * 109.46908 * 299.99766 * 5 2 1 7 7 C 1.86303 * 109.47347 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.47328 * 59.99766 * 5 2 1 9 9 C 1.42894 * 114.00054 * 180.02562 * 8 5 2 10 10 C 1.52995 * 109.47154 * 179.97438 * 9 8 5 11 11 O 1.42897 * 109.47277 * 64.99862 * 10 9 8 12 12 C 1.42899 * 114.00175 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47299 * 179.97438 * 12 11 10 14 14 O 1.42897 * 109.46977 * 65.00004 * 13 12 11 15 15 C 1.35899 * 117.00020 * 180.02562 * 14 13 12 16 16 C 1.38666 * 120.04300 * 0.02562 * 15 14 13 17 17 C 1.38389 * 119.92008 * 179.97438 * 16 15 14 18 18 F 1.35096 * 119.99607 * 180.02562 * 17 16 15 19 19 C 1.38475 * 120.00175 * 0.02924 * 17 16 15 20 20 C 1.38249 * 120.08693 * 359.69647 * 19 17 16 21 21 C 1.38133 * 120.08049 * 0.55607 * 20 19 17 22 22 C 1.50697 * 120.00354 * 179.74909 * 21 20 19 23 23 O 1.42906 * 109.46831 * 254.72325 * 22 21 20 24 24 Si 1.86300 * 109.47007 * 14.71714 * 22 21 20 25 25 H 1.48503 * 109.46942 * 60.00611 * 24 22 21 26 26 H 1.48503 * 109.47276 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47372 * 300.00074 * 24 22 21 28 28 H 1.09003 * 109.47212 * 299.99545 * 1 2 3 29 29 H 1.08996 * 109.47070 * 59.99552 * 1 2 3 30 30 H 1.09005 * 109.47491 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47635 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47343 * 300.00281 * 3 2 1 33 33 H 1.08999 * 109.46834 * 60.00437 * 3 2 1 34 34 H 1.08996 * 109.47674 * 300.00478 * 4 2 1 35 35 H 1.09005 * 109.46572 * 60.00482 * 4 2 1 36 36 H 1.09000 * 109.47405 * 180.02562 * 4 2 1 37 37 H 1.09007 * 109.47376 * 179.97438 * 6 5 2 38 38 H 1.08996 * 109.47510 * 299.99816 * 6 5 2 39 39 H 1.09000 * 109.47215 * 59.99963 * 6 5 2 40 40 H 1.08999 * 109.46851 * 300.00071 * 7 5 2 41 41 H 1.09001 * 109.46790 * 59.99838 * 7 5 2 42 42 H 1.08998 * 109.47162 * 179.97438 * 7 5 2 43 43 H 1.09003 * 109.47188 * 60.00163 * 9 8 5 44 44 H 1.09003 * 109.47479 * 300.00273 * 9 8 5 45 45 H 1.09004 * 109.47143 * 304.99972 * 10 9 8 46 46 H 1.09007 * 109.47302 * 185.00046 * 10 9 8 47 47 H 1.08998 * 109.46998 * 60.00312 * 12 11 10 48 48 H 1.08995 * 109.47768 * 300.00174 * 12 11 10 49 49 H 1.09006 * 109.46882 * 305.00258 * 13 12 11 50 50 H 1.08998 * 109.47331 * 185.00505 * 13 12 11 51 51 H 1.08002 * 120.03767 * 359.96160 * 16 15 14 52 52 H 1.08002 * 119.95231 * 179.97438 * 19 17 16 53 53 H 1.07996 * 119.95806 * 180.29723 * 20 19 17 54 54 H 1.09000 * 109.47374 * 134.71898 * 22 21 20 55 55 H 0.96698 * 113.99401 * 299.99518 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8790 1.5207 8 8 1.6073 -2.4161 1.5210 9 6 2.0285 -3.1815 2.6518 10 6 1.4626 -4.5992 2.5474 11 8 2.0309 -5.2566 1.4130 12 6 1.5668 -6.5948 1.2239 13 6 2.2372 -7.1972 -0.0125 14 8 3.6429 -7.3134 0.2168 15 6 4.3915 -7.8339 -0.7909 16 6 3.7857 -8.2240 -1.9757 17 6 4.5505 -8.7532 -3.0004 18 9 3.9620 -9.1333 -4.1555 19 6 5.9190 -8.8933 -2.8417 20 6 6.5240 -8.4991 -1.6628 21 6 5.7632 -7.9753 -0.6357 22 6 6.4237 -7.5515 0.6508 23 8 6.1448 -8.5145 1.6692 24 14 8.2652 -7.4347 0.3943 25 1 8.5551 -6.4340 -0.6639 26 1 8.9162 -7.0177 1.6622 27 1 8.7924 -8.7598 -0.0196 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7217 -1.2490 37 1 1.8930 -0.5143 3.9323 38 1 1.8933 1.0275 3.0423 39 1 0.4400 -0.0001 3.0423 40 1 4.3769 -1.3931 0.6307 41 1 4.3776 0.1485 1.5205 42 1 4.3773 -1.3925 2.4109 43 1 1.6636 -2.7114 3.5651 44 1 3.1173 -3.2254 2.6757 45 1 0.3795 -4.5507 2.4345 46 1 1.7091 -5.1562 3.4514 47 1 0.4859 -6.5881 1.0837 48 1 1.8157 -7.1930 2.1003 49 1 2.0616 -6.5506 -0.8724 50 1 1.8182 -8.1841 -0.2085 51 1 2.7182 -8.1151 -2.0984 52 1 6.5151 -9.3068 -3.6418 53 1 7.5921 -8.6048 -1.5431 54 1 6.0368 -6.5788 0.9547 55 1 5.2028 -8.6277 1.8559 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10564890_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:32 Heat of formation + Delta-G solvation = -233.197606 kcal Electronic energy + Delta-G solvation = -33189.945275 eV Core-core repulsion = 28651.418509 eV Total energy + Delta-G solvation = -4538.526765 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 374.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.05653 -41.49408 -39.39400 -38.55126 -37.41084 -37.30772 -36.82467 -32.60875 -32.18362 -30.90000 -29.67281 -29.17678 -29.05692 -27.83836 -27.37978 -26.49558 -24.99665 -23.43706 -23.11550 -22.52541 -20.41340 -19.80368 -18.52034 -18.24515 -17.98027 -17.89633 -17.14412 -17.03753 -16.74071 -16.40012 -16.38027 -16.14885 -15.95367 -15.75032 -15.47349 -15.33722 -15.19698 -14.85011 -14.73986 -14.52918 -14.21971 -13.94841 -13.91503 -13.70552 -13.50417 -13.36192 -13.23683 -13.17110 -12.95794 -12.93183 -12.90316 -12.67808 -12.53395 -12.42009 -12.34125 -12.18304 -11.91511 -11.82723 -11.78109 -11.67931 -11.49015 -11.30002 -11.17511 -11.01866 -10.54097 -10.28568 -10.04968 -10.04404 -9.35529 -0.10600 0.13319 1.20980 1.51309 1.53980 1.56172 1.81017 1.96375 1.98874 2.15048 2.36282 2.50609 2.69396 3.06751 3.55039 3.59898 3.84169 3.93816 3.95583 3.99951 4.09128 4.12003 4.12591 4.16077 4.22316 4.25125 4.34145 4.44666 4.47725 4.50405 4.55611 4.60685 4.69200 4.73551 4.75827 4.79488 4.80147 4.81627 4.82333 4.83046 4.85488 4.88663 4.99539 5.02897 5.08709 5.09144 5.15016 5.20454 5.33831 5.40545 5.44336 5.54159 5.54877 5.60482 5.64833 6.16364 6.30409 6.65294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.382 4.382 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.314 2.686 6 C -0.514 4.514 7 C -0.519 4.519 8 O -0.635 6.635 9 C 0.074 3.926 10 C 0.054 3.946 11 O -0.399 6.399 12 C 0.060 3.940 13 C 0.052 3.948 14 O -0.307 6.307 15 C 0.170 3.830 16 C -0.247 4.247 17 C 0.127 3.873 18 F -0.142 7.142 19 C -0.186 4.186 20 C -0.062 4.062 21 C -0.166 4.166 22 C -0.084 4.084 23 O -0.549 6.549 24 Si 1.031 2.969 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.253 1.253 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.102 0.898 51 H 0.156 0.844 52 H 0.158 0.842 53 H 0.154 0.846 54 H 0.081 0.919 55 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 0.648 3.180 3.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.425 4.425 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.444 2.556 6 C -0.617 4.617 7 C -0.620 4.620 8 O -0.595 6.595 9 C -0.001 4.001 10 C -0.022 4.022 11 O -0.319 6.319 12 C -0.017 4.017 13 C -0.022 4.022 14 O -0.220 6.220 15 C 0.123 3.877 16 C -0.267 4.267 17 C 0.108 3.892 18 F -0.121 7.121 19 C -0.205 4.205 20 C -0.079 4.079 21 C -0.167 4.167 22 C -0.192 4.192 23 O -0.356 6.356 24 Si 0.851 3.149 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.177 1.177 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.120 0.880 51 H 0.174 0.826 52 H 0.175 0.825 53 H 0.171 0.829 54 H 0.099 0.901 55 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.648 0.621 2.935 3.070 hybrid contribution -1.614 0.251 -0.396 1.680 sum -2.262 0.872 2.540 3.511 Atomic orbital electron populations 1.21524 0.94128 1.01702 1.01878 1.25916 1.00492 1.02968 1.13100 1.21599 1.01175 0.94712 1.02268 1.21512 1.00780 0.99878 0.97030 0.76234 0.62184 0.52976 0.64246 1.27052 1.06960 1.09765 1.17879 1.27138 1.25924 1.04706 1.04240 1.85387 1.79275 1.46487 1.48362 1.22316 0.99421 0.90766 0.87634 1.22819 0.98314 0.92066 0.88969 1.87985 1.68444 1.26720 1.48707 1.22670 0.98344 0.83495 0.97150 1.23193 0.77707 1.01904 0.99421 1.86117 1.21116 1.77175 1.37563 1.18507 0.90466 0.91846 0.86887 1.21341 1.02262 1.09026 0.94035 1.17618 0.91642 0.97952 0.82015 1.91512 1.84586 1.88864 1.47091 1.21253 0.92880 1.05866 1.00492 1.21017 1.00843 0.94616 0.91446 1.19876 0.91348 1.06555 0.98951 1.25270 1.14054 0.94458 0.85370 1.86652 1.30968 1.61671 1.56273 0.84268 0.70317 0.80506 0.79812 1.16361 1.19673 1.17712 0.91870 0.93427 0.92629 0.92021 0.93166 0.91613 0.92870 0.93360 0.92499 0.90773 0.90428 0.90922 0.91790 0.90496 0.91146 0.88987 0.91764 0.91765 0.90128 0.89139 0.90978 0.91054 0.88049 0.82596 0.82471 0.82867 0.90067 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 2 C -0.38 -0.15 0.53 -10.80 -0.01 -0.15 16 3 C -0.14 0.09 7.85 71.98 0.56 0.65 16 4 C -0.13 -0.31 7.85 71.98 0.56 0.25 16 5 Si 1.31 -2.26 8.45 68.60 0.58 -1.68 16 6 C -0.51 1.39 8.50 113.37 0.96 2.35 16 7 C -0.52 0.11 8.50 113.37 0.96 1.08 16 8 O -0.64 -0.79 8.52 -144.33 -1.23 -2.02 16 9 C 0.07 -0.17 5.50 71.98 0.40 0.23 16 10 C 0.05 -0.15 6.32 71.98 0.45 0.31 16 11 O -0.40 -0.72 10.27 -135.05 -1.39 -2.11 16 12 C 0.06 -0.24 6.32 71.98 0.45 0.22 16 13 C 0.05 -0.16 5.12 71.98 0.37 0.21 16 14 O -0.31 -0.49 9.00 -87.78 -0.79 -1.28 16 15 C 0.17 0.52 6.62 22.50 0.15 0.67 16 16 C -0.25 -0.63 9.02 22.41 0.20 -0.43 16 17 C 0.13 0.54 7.30 22.36 0.16 0.71 16 18 F -0.14 -0.89 17.27 44.97 0.78 -0.11 16 19 C -0.19 -0.40 10.02 22.33 0.22 -0.17 16 20 C -0.06 -0.12 8.65 22.25 0.19 0.07 16 21 C -0.17 -0.55 5.28 -19.76 -0.10 -0.66 16 22 C -0.08 -0.21 2.33 71.23 0.17 -0.04 16 23 O -0.55 -2.07 12.65 -148.98 -1.89 -3.96 16 24 Si 1.03 1.35 25.73 68.60 1.77 3.11 16 25 H -0.24 -0.01 7.11 99.48 0.71 0.69 16 26 H -0.27 -1.09 7.11 99.48 0.71 -0.38 16 27 H -0.25 -0.37 6.74 99.48 0.67 0.30 16 28 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 29 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.05 0.08 7.97 -2.38 -0.02 0.06 16 31 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 32 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 34 H 0.05 0.19 7.96 -2.39 -0.02 0.17 16 35 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 36 H 0.06 0.09 7.79 -2.39 -0.02 0.07 16 37 H 0.07 -0.30 7.48 -2.38 -0.02 -0.32 16 38 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 40 H 0.06 0.11 7.79 -2.39 -0.02 0.09 16 41 H 0.08 -0.09 7.79 -2.39 -0.02 -0.11 16 42 H 0.07 -0.08 7.48 -2.39 -0.02 -0.09 16 43 H 0.09 -0.68 7.21 -2.39 -0.02 -0.69 16 44 H 0.06 -0.17 7.21 -2.39 -0.02 -0.19 16 45 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 46 H 0.08 -0.56 8.14 -2.38 -0.02 -0.58 16 47 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 48 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.07 -0.14 7.66 -2.38 -0.02 -0.16 16 50 H 0.10 -0.75 7.66 -2.39 -0.02 -0.76 16 51 H 0.16 -0.18 6.30 -2.91 -0.02 -0.20 16 52 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 53 H 0.15 -0.22 4.88 -2.91 -0.01 -0.23 16 54 H 0.08 0.15 7.83 -2.39 -0.02 0.13 16 55 H 0.38 -0.20 8.60 -74.06 -0.64 -0.84 16 Total: 0.00 -12.81 442.03 5.05 -7.76 By element: Atomic # 1 Polarization: -6.39 SS G_CDS: 0.94 Total: -5.45 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 6.28 Total: 5.75 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -5.29 Total: -9.37 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.78 Total: -0.11 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.35 Total: 1.43 kcal Total: -12.81 5.05 -7.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10564890_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.439 kcal (2) G-P(sol) polarization free energy of solvation -12.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds