Wall clock time and date at job start Tue Mar 9 2021 13:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47170 * 2 1 4 4 C 1.53000 * 109.46764 * 240.00267 * 2 1 3 5 5 Si 1.86299 * 109.47010 * 120.00364 * 2 1 3 6 6 C 1.86303 * 109.47117 * 299.99818 * 5 2 1 7 7 C 1.86300 * 109.47097 * 179.97438 * 5 2 1 8 8 O 1.63103 * 109.47172 * 59.99979 * 5 2 1 9 9 C 1.42899 * 113.99892 * 180.02562 * 8 5 2 10 10 C 1.53003 * 109.46976 * 179.97438 * 9 8 5 11 11 O 1.42898 * 109.47209 * 64.99964 * 10 9 8 12 12 C 1.35895 * 116.99715 * 180.02562 * 11 10 9 13 13 C 1.38727 * 120.04714 * 0.02562 * 12 11 10 14 14 C 1.38175 * 119.99583 * 179.68497 * 13 12 11 15 15 C 1.38214 * 120.07880 * 0.57101 * 14 13 12 16 16 C 1.50697 * 119.95814 * 179.72888 * 15 14 13 17 17 O 1.42906 * 109.46831 * 254.72617 * 16 15 14 18 18 Si 1.86300 * 109.47007 * 14.72006 * 16 15 14 19 19 H 1.48503 * 109.46942 * 60.00611 * 18 16 15 20 20 H 1.48503 * 109.47276 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47372 * 300.00074 * 18 16 15 22 22 C 1.38521 * 120.08567 * 359.44840 * 15 14 13 23 23 F 1.35091 * 119.99836 * 180.27663 * 22 15 14 24 24 C 1.38350 * 120.00242 * 0.25694 * 22 15 14 25 25 H 1.09000 * 109.47150 * 299.99767 * 1 2 3 26 26 H 1.09007 * 109.47532 * 59.99822 * 1 2 3 27 27 H 1.09008 * 109.47521 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46856 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47359 * 300.00442 * 3 2 1 30 30 H 1.09000 * 109.46894 * 60.00076 * 3 2 1 31 31 H 1.09004 * 109.47493 * 300.00032 * 4 2 1 32 32 H 1.08997 * 109.47338 * 60.00441 * 4 2 1 33 33 H 1.09006 * 109.47249 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.46879 * 180.02562 * 6 5 2 35 35 H 1.09001 * 109.46654 * 300.00096 * 6 5 2 36 36 H 1.08996 * 109.46856 * 60.00185 * 6 5 2 37 37 H 1.09000 * 109.47294 * 300.00010 * 7 5 2 38 38 H 1.08997 * 109.46872 * 59.99842 * 7 5 2 39 39 H 1.08995 * 109.47428 * 180.02562 * 7 5 2 40 40 H 1.09005 * 109.47428 * 60.00025 * 9 8 5 41 41 H 1.09001 * 109.47125 * 299.99679 * 9 8 5 42 42 H 1.09000 * 109.47192 * 304.99630 * 10 9 8 43 43 H 1.09008 * 109.46830 * 185.00154 * 10 9 8 44 44 H 1.08002 * 119.99956 * 0.02562 * 13 12 11 45 45 H 1.07995 * 119.96545 * 180.31350 * 14 13 12 46 46 H 1.09000 * 109.47374 * 134.72190 * 16 15 14 47 47 H 0.96693 * 114.00047 * 60.00191 * 17 16 15 48 48 H 1.07997 * 120.03450 * 180.02562 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1509 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8790 1.5207 8 8 1.6073 -2.4161 1.5210 9 6 2.0284 -3.1815 2.6518 10 6 1.4626 -4.5992 2.5474 11 8 2.0309 -5.2566 1.4130 12 6 1.6306 -6.5333 1.1752 13 6 0.7093 -7.1404 2.0161 14 6 0.2981 -8.4363 1.7696 15 6 0.8124 -9.1332 0.6925 16 6 0.3666 -10.5485 0.4297 17 8 1.4048 -11.4535 0.8111 18 14 -1.1681 -10.9105 1.4218 19 1 -2.2470 -9.9701 1.0254 20 1 -1.6071 -12.3054 1.1633 21 1 -0.8734 -10.7448 2.8677 22 6 1.7328 -8.5304 -0.1491 23 9 2.2302 -9.2113 -1.2046 24 6 2.1424 -7.2309 0.0910 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7489 -1.2494 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7217 -1.2492 34 1 1.8937 -0.5138 3.9322 35 1 1.8934 1.0275 3.0423 36 1 0.4400 -0.0002 3.0423 37 1 4.3769 -1.3931 0.6307 38 1 4.3776 0.1485 1.5205 39 1 4.3773 -1.3933 2.4104 40 1 1.6636 -2.7114 3.5651 41 1 3.1173 -3.2254 2.6757 42 1 0.3795 -4.5507 2.4344 43 1 1.7090 -5.1562 3.4514 44 1 0.3094 -6.5983 2.8603 45 1 -0.4229 -8.9067 2.4216 46 1 0.1503 -10.6702 -0.6317 47 1 1.6495 -11.4002 1.7451 48 1 2.8596 -6.7603 -0.5651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_11680688_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:56 Heat of formation + Delta-G solvation = -185.270355 kcal Electronic energy + Delta-G solvation = -26550.194740 eV Core-core repulsion = 22643.503686 eV Total energy + Delta-G solvation = -3906.691054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.02095 -41.26434 -39.23516 -37.87289 -37.04970 -36.82606 -32.58768 -31.46005 -30.54066 -29.31038 -29.05622 -27.84118 -27.38007 -26.43241 -24.78874 -23.44005 -22.26611 -20.41840 -19.78943 -18.52317 -18.05501 -17.73598 -17.21262 -17.06674 -16.60917 -16.35990 -16.14772 -15.87430 -15.77662 -15.52761 -15.14884 -14.96861 -14.85109 -14.75087 -14.52250 -14.03186 -13.93310 -13.61407 -13.43815 -13.35705 -13.24832 -13.16407 -12.96330 -12.95483 -12.88335 -12.42508 -12.36611 -12.20555 -12.07649 -11.92788 -11.75972 -11.70968 -11.64055 -11.49207 -11.23988 -10.43172 -10.30459 -10.05339 -10.00232 -9.32622 0.01683 0.08754 1.15150 1.45283 1.53833 1.56492 1.79054 1.93669 2.02563 2.15131 2.41180 2.48530 3.27727 3.49004 3.57372 3.74457 3.91835 3.98951 4.10380 4.11780 4.12935 4.19751 4.24088 4.33817 4.45491 4.47442 4.53640 4.69427 4.75407 4.78496 4.79896 4.80920 4.82143 4.83123 4.83876 4.91776 4.99285 5.08490 5.08851 5.10821 5.13818 5.19874 5.33744 5.40216 5.43049 5.48986 5.59141 5.61922 5.66265 6.32204 6.71444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.386 4.386 3 C -0.140 4.140 4 C -0.136 4.136 5 Si 1.319 2.681 6 C -0.514 4.514 7 C -0.521 4.521 8 O -0.639 6.639 9 C 0.072 3.928 10 C 0.043 3.957 11 O -0.316 6.316 12 C 0.162 3.838 13 C -0.209 4.209 14 C -0.056 4.056 15 C -0.200 4.200 16 C -0.088 4.088 17 O -0.555 6.555 18 Si 0.998 3.002 19 H -0.253 1.253 20 H -0.277 1.277 21 H -0.230 1.230 22 C 0.145 3.855 23 F -0.141 7.141 24 C -0.207 4.207 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.169 0.831 45 H 0.159 0.841 46 H 0.106 0.894 47 H 0.390 0.610 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 2.800 7.164 7.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.428 4.428 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.449 2.551 6 C -0.616 4.616 7 C -0.622 4.622 8 O -0.598 6.598 9 C -0.003 4.003 10 C -0.031 4.031 11 O -0.230 6.230 12 C 0.116 3.884 13 C -0.227 4.227 14 C -0.074 4.074 15 C -0.202 4.202 16 C -0.197 4.197 17 O -0.363 6.363 18 Si 0.819 3.181 19 H -0.176 1.176 20 H -0.202 1.202 21 H -0.153 1.153 22 C 0.125 3.875 23 F -0.119 7.119 24 C -0.226 4.226 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.186 0.814 45 H 0.176 0.824 46 H 0.124 0.876 47 H 0.239 0.761 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.755 2.399 6.712 7.641 hybrid contribution 0.939 0.629 -0.437 1.212 sum -1.816 3.028 6.274 7.200 Atomic orbital electron populations 1.21533 0.94178 1.01686 1.01893 1.25985 1.00483 1.03042 1.13290 1.21598 1.01176 0.94715 1.02257 1.21528 1.00846 0.99878 0.97105 0.76133 0.62078 0.52745 0.64150 1.27032 1.07035 1.09784 1.17775 1.27153 1.25878 1.04793 1.04356 1.85407 1.79379 1.46686 1.48354 1.22420 0.99974 0.89605 0.88325 1.23445 0.99770 0.92250 0.87632 1.86149 1.65002 1.23027 1.48785 1.18725 0.92498 0.84287 0.92912 1.21588 1.01286 0.96914 1.02937 1.21052 0.97546 0.93898 0.94861 1.20411 1.01946 0.99028 0.98778 1.25156 1.01235 0.85471 1.07833 1.86523 1.56973 1.59773 1.33009 0.85034 0.74224 0.79544 0.79291 1.17638 1.20219 1.15307 1.17303 0.95025 0.89682 0.85470 1.91495 1.86088 1.79647 1.54716 1.20394 1.06975 0.93916 1.01349 0.91704 0.93604 0.92652 0.91996 0.93327 0.91508 0.92902 0.93500 0.92388 0.90417 0.90456 0.90827 0.91827 0.90509 0.90872 0.87377 0.90971 0.89678 0.87628 0.81383 0.82355 0.87574 0.76123 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 2 C -0.39 0.15 0.53 -10.79 -0.01 0.14 16 3 C -0.14 0.18 7.85 71.98 0.56 0.75 16 4 C -0.14 -0.27 7.85 71.98 0.56 0.30 16 5 Si 1.32 -4.64 8.45 68.60 0.58 -4.06 16 6 C -0.51 2.48 8.50 113.37 0.96 3.44 16 7 C -0.52 1.04 8.50 113.37 0.96 2.00 16 8 O -0.64 0.62 8.52 -144.34 -1.23 -0.61 16 9 C 0.07 -0.41 5.50 71.98 0.40 -0.01 16 10 C 0.04 -0.23 5.12 71.98 0.37 0.14 16 11 O -0.32 -0.70 10.10 -87.73 -0.89 -1.59 16 12 C 0.16 0.40 6.69 22.50 0.15 0.55 16 13 C -0.21 0.50 9.04 22.37 0.20 0.70 16 14 C -0.06 0.11 8.65 22.25 0.19 0.30 16 15 C -0.20 -0.50 5.27 -19.80 -0.10 -0.61 16 16 C -0.09 -0.13 2.45 71.23 0.17 0.05 16 17 O -0.56 -1.75 12.88 -148.98 -1.92 -3.67 16 18 Si 1.00 -2.58 25.48 68.60 1.75 -0.83 16 19 H -0.25 0.46 7.11 99.48 0.71 1.16 16 20 H -0.28 -0.45 7.11 99.48 0.71 0.25 16 21 H -0.23 1.37 6.74 99.48 0.67 2.04 16 22 C 0.14 0.98 7.24 22.36 0.16 1.14 16 23 F -0.14 -1.50 16.75 44.97 0.75 -0.75 16 24 C -0.21 -1.17 9.97 22.41 0.22 -0.94 16 25 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 26 H 0.04 0.07 8.14 -2.38 -0.02 0.05 16 27 H 0.05 0.06 7.97 -2.38 -0.02 0.04 16 28 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 29 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 31 H 0.05 0.18 7.97 -2.39 -0.02 0.16 16 32 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.06 0.05 7.79 -2.38 -0.02 0.04 16 34 H 0.08 -0.53 7.48 -2.39 -0.02 -0.55 16 35 H 0.08 -0.37 7.79 -2.39 -0.02 -0.39 16 36 H 0.07 -0.33 7.79 -2.39 -0.02 -0.34 16 37 H 0.06 0.01 7.79 -2.39 -0.02 -0.01 16 38 H 0.08 -0.20 7.79 -2.39 -0.02 -0.22 16 39 H 0.07 -0.25 7.48 -2.39 -0.02 -0.27 16 40 H 0.11 -1.28 7.21 -2.38 -0.02 -1.29 16 41 H 0.07 -0.48 7.21 -2.39 -0.02 -0.50 16 42 H 0.09 -0.59 7.66 -2.39 -0.02 -0.61 16 43 H 0.11 -1.17 7.66 -2.38 -0.02 -1.19 16 44 H 0.17 -1.51 6.30 -2.91 -0.02 -1.53 16 45 H 0.16 -1.13 4.87 -2.91 -0.01 -1.14 16 46 H 0.11 0.28 7.90 -2.39 -0.02 0.26 16 47 H 0.39 -1.91 8.70 -74.06 -0.64 -2.55 16 48 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 Total: 0.00 -14.78 387.35 5.44 -9.34 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: 1.01 Total: -6.31 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.38 Total: 8.48 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: -4.04 Total: -5.87 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.75 Total: -0.75 kcal Atomic # 14 Polarization: -7.21 SS G_CDS: 2.33 Total: -4.89 kcal Total: -14.78 5.44 -9.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.929 kcal (2) G-P(sol) polarization free energy of solvation -14.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds