Wall clock time and date at job start Tue Mar 9 2021 13:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47188 * 239.99492 * 2 1 3 5 5 O 1.42903 * 109.46738 * 119.99963 * 2 1 3 6 6 C 1.42894 * 114.00393 * 60.00120 * 5 2 1 7 7 H 1.09002 * 112.90574 * 341.24841 * 6 5 2 8 8 C 1.53779 * 113.61588 * 112.50113 * 6 5 2 9 9 C 1.53779 * 87.08402 * 139.98302 * 8 6 5 10 10 H 1.08998 * 113.69354 * 89.12517 * 9 8 6 11 11 C 1.53000 * 113.61731 * 220.02348 * 9 8 6 12 12 O 1.42904 * 109.46797 * 272.49576 * 11 9 8 13 13 C 1.35905 * 117.00000 * 179.97438 * 12 11 9 14 14 C 1.38670 * 120.04160 * 179.97438 * 13 12 11 15 15 C 1.38382 * 119.91767 * 179.97438 * 14 13 12 16 16 F 1.35102 * 119.99620 * 179.97438 * 15 14 13 17 17 C 1.38473 * 120.00337 * 0.02757 * 15 14 13 18 18 C 1.50705 * 119.95468 * 179.97438 * 17 15 14 19 19 O 1.42896 * 109.47566 * 74.99657 * 18 17 15 20 20 Si 1.86302 * 109.47203 * 194.99994 * 18 17 15 21 21 C 1.38249 * 120.08849 * 359.97408 * 17 15 14 22 22 C 1.38133 * 120.07716 * 359.74622 * 21 17 15 23 23 C 1.53784 * 113.61434 * 209.99830 * 6 5 2 24 24 H 1.09000 * 109.47187 * 299.99961 * 1 2 3 25 25 H 1.08994 * 109.47098 * 60.00554 * 1 2 3 26 26 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46909 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47057 * 299.99856 * 3 2 1 29 29 H 1.09000 * 109.47072 * 59.99969 * 3 2 1 30 30 H 1.08995 * 109.47503 * 300.00055 * 4 2 1 31 31 H 1.09006 * 109.46825 * 60.00228 * 4 2 1 32 32 H 1.08993 * 109.46740 * 179.97438 * 4 2 1 33 33 H 1.09006 * 113.61307 * 25.43504 * 8 6 5 34 34 H 1.09007 * 113.61642 * 254.53261 * 8 6 5 35 35 H 1.09003 * 109.47303 * 32.48927 * 11 9 8 36 36 H 1.08993 * 109.47406 * 152.49206 * 11 9 8 37 37 H 1.07999 * 120.03888 * 359.95730 * 14 13 12 38 38 H 1.09010 * 109.46982 * 314.99357 * 18 17 15 39 39 H 0.96699 * 114.00315 * 59.99615 * 19 18 17 40 40 H 1.48495 * 110.00111 * 58.67361 * 20 18 17 41 41 H 1.48497 * 109.99937 * 179.97438 * 20 18 17 42 42 H 1.08002 * 119.96026 * 180.02562 * 21 17 15 43 43 H 1.08006 * 119.99833 * 180.27421 * 22 21 17 44 44 H 1.09004 * 113.61451 * 105.47160 * 23 6 5 45 45 H 1.08994 * 113.61477 * 334.56462 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0062 -0.6737 1.1668 6 6 1.5846 -2.0355 1.2646 7 1 0.7241 -2.2595 0.6341 8 6 2.7333 -3.0478 1.1215 9 6 2.0561 -3.8557 2.2411 10 1 1.3244 -4.5778 1.8790 11 6 3.0418 -4.4601 3.2431 12 8 3.4763 -5.7375 2.7724 13 6 4.3616 -6.4135 3.5510 14 6 4.8246 -7.6592 3.1548 15 6 5.7264 -8.3450 3.9493 16 9 6.1781 -9.5589 3.5651 17 6 6.1650 -7.7877 5.1386 18 6 7.1466 -8.5359 6.0034 19 8 8.4477 -8.4668 5.4164 20 14 7.1895 -7.7689 7.7006 21 6 5.7035 -6.5459 5.5339 22 6 4.8077 -5.8557 4.7406 23 6 1.4331 -2.5310 2.7125 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4424 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7209 -1.2493 33 1 3.7071 -2.6456 1.4010 34 1 2.7463 -3.5605 0.1596 35 1 3.9027 -3.8000 3.3492 36 1 2.5519 -4.5764 4.2097 37 1 4.4816 -8.0935 2.2274 38 1 6.8391 -9.5786 6.0836 39 1 8.7858 -7.5667 5.3141 40 1 5.8355 -7.8057 8.3090 41 1 8.1535 -8.4981 8.5633 42 1 6.0472 -6.1130 6.4617 43 1 4.4514 -4.8836 5.0485 44 1 0.3963 -2.6265 3.0351 45 1 2.0515 -1.9876 3.4269 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_11680688_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:25 Heat of formation + Delta-G solvation = -113.809053 kcal Electronic energy + Delta-G solvation = -25640.854597 eV Core-core repulsion = 21733.705301 eV Total energy + Delta-G solvation = -3907.149297 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86308 -41.50274 -40.77807 -39.21362 -38.21938 -37.11236 -33.96141 -32.43392 -31.47042 -29.61765 -28.44623 -28.35768 -26.74260 -26.33695 -24.61759 -23.48583 -22.39437 -20.89750 -20.74814 -19.61127 -18.50140 -17.85377 -17.63107 -17.19676 -17.07709 -16.80188 -16.62947 -16.30999 -16.05691 -15.82422 -15.55972 -15.23866 -15.00825 -14.64353 -14.49825 -14.40673 -13.95701 -13.67473 -13.59403 -13.53188 -13.37861 -13.22714 -13.04545 -12.87864 -12.72905 -12.52556 -12.37570 -12.24186 -12.11838 -11.94419 -11.89464 -11.76999 -11.43511 -11.26581 -10.45780 -10.40563 -9.97815 -9.35533 -5.08723 0.02975 0.07956 1.24129 1.61309 1.86841 1.95621 2.40195 2.66870 3.26520 3.36441 3.43067 3.46509 3.52743 3.67755 3.68431 3.72879 3.83426 3.84571 3.90583 4.00701 4.04132 4.11095 4.12646 4.18699 4.33988 4.43042 4.49133 4.51353 4.59353 4.67110 4.69755 4.71355 4.76013 4.78910 4.83602 4.86486 4.88452 4.93085 5.04585 5.07241 5.09977 5.12017 5.23098 5.25528 5.30739 5.58614 6.21991 6.35702 6.57796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.361 6.361 6 C 0.062 3.938 7 H 0.092 0.908 8 C -0.148 4.148 9 C -0.111 4.111 10 H 0.105 0.895 11 C 0.070 3.930 12 O -0.307 6.307 13 C 0.169 3.831 14 C -0.192 4.192 15 C 0.167 3.833 16 F -0.125 7.125 17 C -0.196 4.196 18 C -0.064 4.064 19 O -0.537 6.537 20 Si 0.689 3.311 21 C -0.044 4.044 22 C -0.216 4.216 23 C -0.126 4.126 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.378 0.622 40 H -0.255 1.255 41 H -0.252 1.252 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.078 0.922 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 5.761 -0.079 6.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.281 6.281 6 C 0.004 3.996 7 H 0.110 0.890 8 C -0.186 4.186 9 C -0.129 4.129 10 H 0.123 0.877 11 C -0.005 4.005 12 O -0.220 6.220 13 C 0.123 3.877 14 C -0.212 4.212 15 C 0.147 3.853 16 F -0.103 7.103 17 C -0.198 4.198 18 C -0.174 4.174 19 O -0.342 6.342 20 Si 0.590 3.410 21 C -0.061 4.061 22 C -0.235 4.235 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.164 0.836 38 H 0.130 0.870 39 H 0.225 0.775 40 H -0.180 1.180 41 H -0.177 1.177 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.097 0.903 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.362 4.990 0.709 5.566 hybrid contribution -0.405 -0.745 -0.618 1.049 sum -2.767 4.245 0.091 5.068 Atomic orbital electron populations 1.22473 0.95639 1.02451 1.03106 1.21542 0.93104 0.93259 0.85502 1.21771 1.02040 0.93190 1.02629 1.22471 1.02340 1.00767 0.97824 1.88031 1.73749 1.23344 1.42931 1.23562 0.97056 0.81895 0.97099 0.88982 1.23629 0.99455 0.96452 0.99045 1.22331 0.98002 0.95897 0.96681 0.87708 1.22924 0.97629 0.82054 0.97872 1.86099 1.57030 1.32223 1.46614 1.18596 0.88849 0.90829 0.89440 1.20311 1.02528 0.95095 1.03257 1.17059 0.94053 0.81236 0.92956 1.91551 1.87239 1.40793 1.90746 1.20307 1.04348 0.97790 0.97327 1.24973 0.83029 1.03888 1.05514 1.86553 1.29908 1.32996 1.84721 0.94990 0.82062 0.89300 0.74643 1.20619 0.94749 0.92370 0.98387 1.21281 1.03536 1.02636 0.96039 1.23233 1.01865 0.94122 0.97175 0.91587 0.91334 0.92237 0.91739 0.91045 0.91754 0.92285 0.91516 0.91644 0.89004 0.90886 0.91154 0.91300 0.83628 0.86988 0.77491 1.17954 1.17669 0.84191 0.84241 0.90343 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.21 8.38 37.16 0.31 0.52 16 2 C 0.10 -0.04 1.11 -90.62 -0.10 -0.14 16 3 C -0.14 0.11 8.84 37.16 0.33 0.43 16 4 C -0.18 0.16 8.38 37.16 0.31 0.48 16 5 O -0.36 -0.34 10.00 -35.23 -0.35 -0.70 16 6 C 0.06 -0.06 2.82 -25.92 -0.07 -0.13 16 7 H 0.09 -0.14 5.55 -51.93 -0.29 -0.43 16 8 C -0.15 0.15 7.46 -25.92 -0.19 -0.04 16 9 C -0.11 0.20 4.01 -89.81 -0.36 -0.16 16 10 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 11 C 0.07 -0.12 4.58 37.16 0.17 0.05 16 12 O -0.31 -0.27 10.14 -19.44 -0.20 -0.47 16 13 C 0.17 0.17 6.68 -39.23 -0.26 -0.10 16 14 C -0.19 -0.36 9.97 -39.37 -0.39 -0.76 16 15 C 0.17 0.44 7.24 -39.44 -0.29 0.15 16 16 F -0.13 -0.55 16.75 2.25 0.04 -0.51 16 17 C -0.20 -0.19 5.27 -104.53 -0.55 -0.74 16 18 C -0.06 -0.05 2.45 36.01 0.09 0.04 16 19 O -0.54 -0.75 12.88 -35.23 -0.45 -1.20 16 20 Si 0.69 -0.70 29.91 -169.99 -5.08 -5.79 16 21 C -0.04 0.04 8.65 -39.62 -0.34 -0.30 16 22 C -0.22 0.17 9.04 -39.43 -0.36 -0.19 16 23 C -0.13 0.24 7.47 -25.91 -0.19 0.05 16 24 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 26 H 0.06 -0.09 6.25 -51.93 -0.32 -0.41 16 27 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 30 H 0.06 -0.06 7.02 -51.93 -0.36 -0.43 16 31 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.09 -0.04 7.90 -51.93 -0.41 -0.45 16 34 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 35 H 0.07 -0.17 7.35 -51.93 -0.38 -0.55 16 36 H 0.07 -0.19 7.68 -51.93 -0.40 -0.59 16 37 H 0.15 0.18 8.06 -52.49 -0.42 -0.25 16 38 H 0.11 0.22 7.90 -51.92 -0.41 -0.19 16 39 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 40 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 41 H -0.25 -0.58 7.11 56.52 0.40 -0.18 16 42 H 0.14 -0.55 5.12 -52.49 -0.27 -0.81 16 43 H 0.14 -0.42 6.30 -52.48 -0.33 -0.76 16 44 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 45 H 0.09 -0.17 8.10 -51.93 -0.42 -0.59 16 LS Contribution 363.57 15.07 5.48 5.48 Total: 0.00 -5.92 363.57 -9.52 -15.44 By element: Atomic # 1 Polarization: -4.39 SS G_CDS: -7.05 Total: -11.44 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.90 Total: -0.83 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -1.00 Total: -2.36 kcal Atomic # 9 Polarization: -0.55 SS G_CDS: 0.04 Total: -0.51 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.08 Total: -5.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -5.92 -9.52 -15.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.366 kcal (2) G-P(sol) polarization free energy of solvation -5.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds