Wall clock time and date at job start Tue Mar 9 2021 13:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47188 * 239.99492 * 2 1 3 5 5 O 1.42903 * 109.46738 * 119.99963 * 2 1 3 6 6 C 1.42894 * 114.00393 * 60.00120 * 5 2 1 7 7 H 1.09002 * 112.90574 * 341.24841 * 6 5 2 8 8 C 1.53779 * 113.61588 * 112.50113 * 6 5 2 9 9 C 1.53779 * 87.08402 * 139.98302 * 8 6 5 10 10 H 1.08998 * 113.69354 * 89.12517 * 9 8 6 11 11 C 1.53000 * 113.61731 * 220.02348 * 9 8 6 12 12 O 1.42904 * 109.46797 * 272.49576 * 11 9 8 13 13 C 1.35905 * 117.00000 * 179.97438 * 12 11 9 14 14 C 1.38670 * 120.04160 * 179.97438 * 13 12 11 15 15 C 1.38382 * 119.91767 * 179.97438 * 14 13 12 16 16 F 1.35102 * 119.99620 * 179.97438 * 15 14 13 17 17 C 1.38473 * 120.00337 * 0.02757 * 15 14 13 18 18 C 1.50705 * 119.95468 * 179.97438 * 17 15 14 19 19 O 1.42896 * 109.47566 * 74.99657 * 18 17 15 20 20 Si 1.86302 * 109.47203 * 194.99994 * 18 17 15 21 21 C 1.38249 * 120.08849 * 359.97408 * 17 15 14 22 22 C 1.38133 * 120.07716 * 359.74622 * 21 17 15 23 23 C 1.53784 * 113.61434 * 209.99830 * 6 5 2 24 24 H 1.09000 * 109.47187 * 299.99961 * 1 2 3 25 25 H 1.08994 * 109.47098 * 60.00554 * 1 2 3 26 26 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46909 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47057 * 299.99856 * 3 2 1 29 29 H 1.09000 * 109.47072 * 59.99969 * 3 2 1 30 30 H 1.08995 * 109.47503 * 300.00055 * 4 2 1 31 31 H 1.09006 * 109.46825 * 60.00228 * 4 2 1 32 32 H 1.08993 * 109.46740 * 179.97438 * 4 2 1 33 33 H 1.09006 * 113.61307 * 25.43504 * 8 6 5 34 34 H 1.09007 * 113.61642 * 254.53261 * 8 6 5 35 35 H 1.09003 * 109.47303 * 32.48927 * 11 9 8 36 36 H 1.08993 * 109.47406 * 152.49206 * 11 9 8 37 37 H 1.07999 * 120.03888 * 359.95730 * 14 13 12 38 38 H 1.09010 * 109.46982 * 314.99357 * 18 17 15 39 39 H 0.96699 * 114.00315 * 59.99615 * 19 18 17 40 40 H 1.48495 * 110.00111 * 58.67361 * 20 18 17 41 41 H 1.48497 * 109.99937 * 179.97438 * 20 18 17 42 42 H 1.08002 * 119.96026 * 180.02562 * 21 17 15 43 43 H 1.08006 * 119.99833 * 180.27421 * 22 21 17 44 44 H 1.09004 * 113.61451 * 105.47160 * 23 6 5 45 45 H 1.08994 * 113.61477 * 334.56462 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0062 -0.6737 1.1668 6 6 1.5846 -2.0355 1.2646 7 1 0.7241 -2.2595 0.6341 8 6 2.7333 -3.0478 1.1215 9 6 2.0561 -3.8557 2.2411 10 1 1.3244 -4.5778 1.8790 11 6 3.0418 -4.4601 3.2431 12 8 3.4763 -5.7375 2.7724 13 6 4.3616 -6.4135 3.5510 14 6 4.8246 -7.6592 3.1548 15 6 5.7264 -8.3450 3.9493 16 9 6.1781 -9.5589 3.5651 17 6 6.1650 -7.7877 5.1386 18 6 7.1466 -8.5359 6.0034 19 8 8.4477 -8.4668 5.4164 20 14 7.1895 -7.7689 7.7006 21 6 5.7035 -6.5459 5.5339 22 6 4.8077 -5.8557 4.7406 23 6 1.4331 -2.5310 2.7125 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4424 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7209 -1.2493 33 1 3.7071 -2.6456 1.4010 34 1 2.7463 -3.5605 0.1596 35 1 3.9027 -3.8000 3.3492 36 1 2.5519 -4.5764 4.2097 37 1 4.4816 -8.0935 2.2274 38 1 6.8391 -9.5786 6.0836 39 1 8.7858 -7.5667 5.3141 40 1 5.8355 -7.8057 8.3090 41 1 8.1535 -8.4981 8.5633 42 1 6.0472 -6.1130 6.4617 43 1 4.4514 -4.8836 5.0485 44 1 0.3963 -2.6265 3.0351 45 1 2.0515 -1.9876 3.4269 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_11680688_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:25 Heat of formation + Delta-G solvation = -108.416687 kcal Electronic energy + Delta-G solvation = -25640.620767 eV Core-core repulsion = 21733.705301 eV Total energy + Delta-G solvation = -3906.915466 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.08283 -41.46244 -40.72228 -39.20327 -38.16406 -37.14179 -33.90814 -32.45197 -31.48128 -29.52789 -28.35032 -28.27820 -26.63338 -26.34769 -24.58594 -23.46552 -22.40404 -20.82786 -20.63090 -19.63395 -18.53201 -17.84034 -17.63085 -17.21105 -17.11995 -16.82696 -16.61116 -16.35296 -16.05157 -15.78510 -15.62037 -15.19111 -15.05219 -14.58246 -14.44256 -14.38083 -14.01129 -13.69028 -13.52249 -13.40815 -13.28806 -13.19187 -12.95573 -12.79412 -12.65851 -12.49506 -12.32031 -12.22656 -12.10494 -11.98409 -11.80645 -11.66172 -11.33153 -11.15834 -10.49291 -10.34158 -10.03155 -9.37293 -5.03112 -0.01719 0.06481 1.26171 1.65580 1.91674 1.97741 2.38522 2.75641 3.24195 3.44026 3.50106 3.55147 3.60055 3.71315 3.79235 3.83499 3.91081 3.92289 3.99711 4.10138 4.13822 4.14858 4.20493 4.29141 4.40548 4.47310 4.56032 4.62289 4.69070 4.79202 4.80888 4.81918 4.83253 4.86865 4.88468 4.92951 4.95270 5.03962 5.08382 5.11734 5.14089 5.18845 5.32707 5.34262 5.40093 5.56415 6.26354 6.43169 6.75201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.379 6.379 6 C 0.057 3.943 7 H 0.097 0.903 8 C -0.149 4.149 9 C -0.105 4.105 10 H 0.103 0.897 11 C 0.065 3.935 12 O -0.322 6.322 13 C 0.161 3.839 14 C -0.207 4.207 15 C 0.138 3.862 16 F -0.145 7.145 17 C -0.201 4.201 18 C -0.083 4.083 19 O -0.558 6.558 20 Si 0.803 3.197 21 C -0.037 4.037 22 C -0.207 4.207 23 C -0.120 4.120 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.396 0.604 40 H -0.278 1.278 41 H -0.300 1.300 42 H 0.175 0.825 43 H 0.169 0.831 44 H 0.087 0.913 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 7.367 0.865 7.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.232 4.232 5 O -0.299 6.299 6 C -0.001 4.001 7 H 0.114 0.886 8 C -0.187 4.187 9 C -0.123 4.123 10 H 0.122 0.878 11 C -0.009 4.009 12 O -0.235 6.235 13 C 0.115 3.885 14 C -0.226 4.226 15 C 0.118 3.882 16 F -0.123 7.123 17 C -0.202 4.202 18 C -0.190 4.190 19 O -0.366 6.366 20 Si 0.706 3.294 21 C -0.055 4.055 22 C -0.226 4.226 23 C -0.157 4.157 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.158 0.842 38 H 0.109 0.891 39 H 0.246 0.754 40 H -0.205 1.205 41 H -0.228 1.228 42 H 0.192 0.808 43 H 0.187 0.813 44 H 0.105 0.895 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.876 6.612 1.610 7.388 hybrid contribution -0.241 -1.255 -0.953 1.595 sum -3.117 5.357 0.657 6.233 Atomic orbital electron populations 1.22450 0.95014 1.02723 1.03252 1.21654 0.93641 0.93328 0.85350 1.21793 1.01659 0.93211 1.03007 1.22446 1.01816 1.00896 0.97998 1.88004 1.74224 1.24172 1.43509 1.23684 0.97145 0.81217 0.98037 0.88562 1.23611 0.99250 0.96674 0.99183 1.22274 0.97848 0.95858 0.96352 0.87840 1.23112 0.98143 0.81204 0.98471 1.86081 1.57040 1.33224 1.47191 1.18702 0.89060 0.90567 0.90182 1.20363 1.02993 0.95967 1.03327 1.17387 0.95369 0.81112 0.94286 1.91491 1.87676 1.42061 1.91095 1.20453 1.04412 0.98618 0.96715 1.25332 0.82859 1.03346 1.07510 1.86504 1.30181 1.34942 1.85013 0.93775 0.78138 0.87195 0.70243 1.20969 0.93903 0.91255 0.99326 1.21628 1.02556 1.03494 0.94886 1.23198 1.02394 0.93614 0.96497 0.92016 0.90585 0.91909 0.92343 0.89913 0.92136 0.92226 0.90725 0.92417 0.89631 0.91430 0.90111 0.89678 0.84174 0.89114 0.75400 1.20452 1.22789 0.80840 0.81339 0.89482 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.47 8.38 71.98 0.60 1.07 16 2 C 0.10 -0.07 1.11 -10.79 -0.01 -0.08 16 3 C -0.14 0.20 8.84 71.98 0.64 0.84 16 4 C -0.17 0.30 8.38 71.98 0.60 0.91 16 5 O -0.38 -0.75 10.00 -148.98 -1.49 -2.24 16 6 C 0.06 -0.11 2.82 31.12 0.09 -0.02 16 7 H 0.10 -0.31 5.55 -2.39 -0.01 -0.32 16 8 C -0.15 0.29 7.46 31.12 0.23 0.52 16 9 C -0.10 0.43 4.01 -10.27 -0.04 0.39 16 10 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C 0.06 -0.29 4.58 71.98 0.33 0.04 16 12 O -0.32 -0.50 10.14 -92.48 -0.94 -1.44 16 13 C 0.16 0.30 6.68 22.50 0.15 0.45 16 14 C -0.21 -1.10 9.97 22.41 0.22 -0.87 16 15 C 0.14 0.96 7.24 22.36 0.16 1.12 16 16 F -0.14 -1.67 16.75 44.97 0.75 -0.92 16 17 C -0.20 -0.44 5.27 -19.80 -0.10 -0.54 16 18 C -0.08 -0.18 2.45 71.24 0.17 -0.01 16 19 O -0.56 -1.92 12.88 -148.98 -1.92 -3.84 16 20 Si 0.80 -2.39 29.91 68.60 2.05 -0.34 16 21 C -0.04 0.14 8.65 22.25 0.19 0.33 16 22 C -0.21 0.69 9.04 22.37 0.20 0.89 16 23 C -0.12 0.56 7.47 31.12 0.23 0.79 16 24 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.06 -0.21 6.25 -2.39 -0.01 -0.23 16 27 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.08 -0.33 8.14 -2.38 -0.02 -0.35 16 29 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 -0.12 7.02 -2.39 -0.02 -0.13 16 31 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 32 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.09 -0.06 7.90 -2.38 -0.02 -0.08 16 34 H 0.07 -0.07 8.14 -2.38 -0.02 -0.09 16 35 H 0.08 -0.53 7.35 -2.39 -0.02 -0.55 16 36 H 0.09 -0.65 7.68 -2.39 -0.02 -0.67 16 37 H 0.14 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.09 0.53 7.90 -2.38 -0.02 0.51 16 39 H 0.40 -2.43 8.70 -74.06 -0.64 -3.07 16 40 H -0.28 -0.27 7.11 99.48 0.71 0.44 16 41 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 42 H 0.17 -1.92 5.12 -2.91 -0.01 -1.93 16 43 H 0.17 -1.58 6.30 -2.91 -0.02 -1.60 16 44 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 45 H 0.10 -0.46 8.10 -2.39 -0.02 -0.48 16 Total: 0.00 -15.95 363.57 2.51 -13.44 By element: Atomic # 1 Polarization: -10.88 SS G_CDS: 0.38 Total: -10.50 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 3.67 Total: 5.83 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -4.35 Total: -7.51 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.75 Total: -0.92 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.05 Total: -0.34 kcal Total: -15.95 2.51 -13.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.979 kcal (2) G-P(sol) polarization free energy of solvation -15.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds