Wall clock time and date at job start Tue Mar 9 2021 13:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.46962 * 2 1 4 4 C 1.50706 * 109.47120 * 119.99880 * 2 1 3 5 5 C 1.38203 * 119.95640 * 15.00021 * 4 2 1 6 6 C 1.38174 * 120.08176 * 180.02562 * 5 4 2 7 7 C 1.38729 * 119.98977 * 359.97438 * 6 5 4 8 8 O 1.35906 * 120.03946 * 179.97438 * 7 6 5 9 9 C 1.42899 * 117.00229 * 0.02562 * 8 7 6 10 10 C 1.52994 * 109.47206 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47251 * 54.99706 * 10 9 8 12 12 C 1.53003 * 109.47055 * 174.99619 * 10 9 8 13 13 C 1.53000 * 109.46756 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47269 * 299.99853 * 13 12 10 15 15 H 1.09004 * 109.47154 * 300.00477 * 14 13 12 16 16 O 1.42903 * 109.47067 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47112 * 60.00365 * 14 13 12 18 18 C 1.52999 * 109.47141 * 294.99576 * 10 9 8 19 19 C 1.38712 * 119.91815 * 359.97438 * 7 6 5 20 20 C 1.38336 * 119.91683 * 0.25997 * 19 7 6 21 21 F 1.35104 * 119.99562 * 179.72525 * 20 19 7 22 22 H 0.96698 * 113.99806 * 60.00376 * 1 2 3 23 23 H 1.08997 * 109.47105 * 239.99928 * 2 1 3 24 24 H 1.48497 * 109.99974 * 298.68011 * 3 2 1 25 25 H 1.48500 * 109.99785 * 60.00040 * 3 2 1 26 26 H 1.08004 * 119.96411 * 0.02562 * 5 4 2 27 27 H 1.07996 * 120.00681 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46748 * 299.99921 * 9 8 7 29 29 H 1.08999 * 109.47366 * 59.99267 * 9 8 7 30 30 H 1.09000 * 109.46959 * 300.00094 * 12 10 9 31 31 H 1.08998 * 109.46827 * 60.00328 * 12 10 9 32 32 H 1.08998 * 109.47206 * 60.00534 * 13 12 10 33 33 H 1.09008 * 109.46995 * 180.02562 * 13 12 10 34 34 H 0.96704 * 113.99499 * 180.02562 * 16 14 13 35 35 H 1.08998 * 109.46827 * 59.99647 * 17 14 13 36 36 H 1.09000 * 109.46959 * 179.97438 * 17 14 13 37 37 H 1.08990 * 109.47232 * 300.00141 * 18 10 9 38 38 H 1.09000 * 109.46849 * 60.00304 * 18 10 9 39 39 H 1.08002 * 120.03846 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.0710 -1.4969 1.9729 6 6 1.5287 -2.1489 3.1019 7 6 2.8535 -2.0149 3.4909 8 8 3.3047 -2.6554 4.6014 9 6 2.3600 -3.4507 5.3205 10 6 3.0463 -4.0889 6.5297 11 1 3.5108 -3.3114 7.1362 12 6 2.0088 -4.8382 7.3683 13 6 2.6951 -5.4759 8.5780 14 6 3.7672 -6.4562 8.0980 15 1 3.3031 -7.2341 7.4916 16 8 4.4078 -7.0522 9.2279 17 6 4.8047 -5.7070 7.2594 18 6 4.1181 -5.0694 6.0492 19 6 3.7172 -1.2263 2.7450 20 6 3.2539 -0.5712 1.6181 21 9 4.0924 0.2017 0.8936 22 1 -0.3933 0.4416 -0.7651 23 1 1.7924 -0.5138 -0.8900 24 1 1.5879 2.4585 -1.2242 25 1 1.5614 2.4679 1.2085 26 1 0.0395 -1.6020 1.6704 27 1 0.8554 -2.7635 3.6809 28 1 1.5379 -2.8204 5.6595 29 1 1.9725 -4.2332 4.6681 30 1 1.2452 -4.1397 7.7106 31 1 1.5444 -5.6158 6.7619 32 1 3.1592 -4.6980 9.1843 33 1 1.9560 -6.0101 9.1752 34 1 5.1010 -7.6861 8.9979 35 1 5.2688 -4.9291 7.8658 36 1 5.5688 -6.4053 6.9179 37 1 3.6537 -5.8469 5.4428 38 1 4.8572 -4.5355 5.4519 39 1 4.7489 -1.1203 3.0463 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_11680688_16737254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:35 Heat of formation + Delta-G solvation = -150.928314 kcal Electronic energy + Delta-G solvation = -22155.015822 eV Core-core repulsion = 18557.332152 eV Total energy + Delta-G solvation = -3597.683671 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.21060 -41.36928 -40.14034 -38.95503 -37.47732 -36.63853 -32.64650 -31.92937 -31.61807 -31.38254 -27.12904 -26.15839 -24.01863 -23.86798 -22.70376 -21.92855 -20.98424 -19.59653 -18.74326 -18.23343 -17.55872 -17.24548 -17.18691 -16.93806 -16.76621 -16.32131 -15.90631 -15.66797 -15.55249 -14.98136 -14.87061 -14.66470 -14.07028 -13.99372 -13.86274 -13.72589 -13.33708 -13.30011 -13.19962 -12.61950 -12.54487 -12.28977 -12.22129 -11.99832 -11.80816 -11.66984 -11.65929 -11.19392 -10.77857 -10.69955 -9.94774 -9.12077 -4.71675 0.02705 0.18738 1.31800 1.63047 1.92218 1.99745 2.52480 2.95783 3.10054 3.24051 3.51582 3.58783 3.62357 3.72578 3.77448 3.92741 3.97715 4.03293 4.09328 4.22155 4.24854 4.26385 4.35780 4.36797 4.38914 4.42077 4.52127 4.69774 4.85962 4.87679 4.95984 4.97427 5.00186 5.06815 5.07174 5.19990 5.23760 5.27290 5.33446 5.59748 6.25947 6.38066 6.66993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.067 4.067 3 Si 0.669 3.331 4 C -0.147 4.147 5 C -0.027 4.027 6 C -0.217 4.217 7 C 0.160 3.840 8 O -0.306 6.306 9 C 0.062 3.938 10 C -0.088 4.088 11 H 0.086 0.914 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.103 3.897 15 H 0.055 0.945 16 O -0.569 6.569 17 C -0.152 4.152 18 C -0.111 4.111 19 C -0.182 4.182 20 C 0.135 3.865 21 F -0.105 7.105 22 H 0.384 0.616 23 H 0.081 0.919 24 H -0.255 1.255 25 H -0.253 1.253 26 H 0.144 0.856 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.379 0.621 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -2.183 -1.090 2.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.176 4.176 3 Si 0.568 3.432 4 C -0.149 4.149 5 C -0.046 4.046 6 C -0.235 4.235 7 C 0.113 3.887 8 O -0.220 6.220 9 C -0.013 4.013 10 C -0.106 4.106 11 H 0.104 0.896 12 C -0.148 4.148 13 C -0.149 4.149 14 C 0.044 3.956 15 H 0.073 0.927 16 O -0.375 6.375 17 C -0.190 4.190 18 C -0.149 4.149 19 C -0.201 4.201 20 C 0.116 3.884 21 F -0.084 7.084 22 H 0.232 0.768 23 H 0.099 0.901 24 H -0.180 1.180 25 H -0.177 1.177 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.226 0.774 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.108 -1.247 -0.140 1.260 hybrid contribution -0.784 -0.488 -1.035 1.387 sum -0.892 -1.735 -1.175 2.277 Atomic orbital electron populations 1.86437 1.17558 1.80612 1.50042 1.24436 0.84706 1.10866 0.97595 0.94709 0.93111 0.74207 0.81130 1.19206 0.92477 1.03523 0.99647 1.20630 1.00002 0.91953 0.91964 1.21385 0.95131 1.06188 1.00838 1.18596 0.91774 0.91673 0.86611 1.86064 1.39201 1.60427 1.36274 1.22980 0.91497 0.93664 0.93188 1.21241 0.96680 0.98028 0.94697 0.89563 1.21478 0.97348 0.99708 0.96233 1.21441 0.97382 0.98434 0.97647 1.21849 0.92741 0.94292 0.86738 0.92732 1.86521 1.55597 1.61927 1.33468 1.22289 0.98520 1.00835 0.97370 1.21526 0.97974 0.98111 0.97283 1.20151 1.01698 1.02141 0.96101 1.16867 0.86836 0.93486 0.91249 1.91172 1.69917 1.71230 1.76071 0.76787 0.90147 1.18044 1.17665 0.83866 0.84626 0.91461 0.91513 0.90716 0.91226 0.90898 0.90798 0.77358 0.90900 0.91483 0.91726 0.90638 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.39 11.48 -35.23 -0.40 -0.79 16 2 C -0.07 -0.04 2.96 36.01 0.11 0.06 16 3 Si 0.67 0.58 29.56 -169.99 -5.03 -4.45 16 4 C -0.15 -0.25 5.16 -104.53 -0.54 -0.79 16 5 C -0.03 -0.04 9.36 -39.62 -0.37 -0.41 16 6 C -0.22 -0.12 9.04 -39.42 -0.36 -0.47 16 7 C 0.16 0.19 6.69 -39.22 -0.26 -0.07 16 8 O -0.31 -0.25 9.67 -19.44 -0.19 -0.43 16 9 C 0.06 -0.09 4.12 37.15 0.15 0.06 16 10 C -0.09 0.15 2.43 -90.62 -0.22 -0.07 16 11 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 12 C -0.11 0.25 5.20 -26.73 -0.14 0.11 16 13 C -0.11 0.08 5.57 -26.73 -0.15 -0.07 16 14 C 0.10 -0.06 3.47 -26.73 -0.09 -0.15 16 15 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 16 O -0.57 -0.47 13.32 -35.23 -0.47 -0.94 16 17 C -0.15 0.19 5.55 -26.70 -0.15 0.04 16 18 C -0.11 0.16 5.10 -26.70 -0.14 0.02 16 19 C -0.18 -0.21 9.97 -39.37 -0.39 -0.60 16 20 C 0.14 0.18 6.66 -39.44 -0.26 -0.08 16 21 F -0.11 -0.06 13.70 2.25 0.03 -0.03 16 22 H 0.38 -1.17 8.74 45.56 0.40 -0.78 16 23 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 24 H -0.26 -0.56 7.11 56.52 0.40 -0.16 16 25 H -0.25 -1.07 7.11 56.52 0.40 -0.67 16 26 H 0.14 0.13 7.13 -52.48 -0.37 -0.24 16 27 H 0.14 -0.20 6.30 -52.49 -0.33 -0.53 16 28 H 0.07 -0.15 7.66 -51.93 -0.40 -0.55 16 29 H 0.07 -0.16 7.66 -51.93 -0.40 -0.55 16 30 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 31 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 32 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.07 -0.03 8.14 -51.92 -0.42 -0.45 16 34 H 0.38 -1.13 9.08 45.56 0.41 -0.72 16 35 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 37 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 38 H 0.07 -0.04 7.82 -51.93 -0.41 -0.45 16 39 H 0.15 -0.02 8.06 -52.49 -0.42 -0.45 16 LS Contribution 316.91 15.07 4.78 4.78 Total: 0.00 -5.46 316.91 -9.02 -14.49 By element: Atomic # 1 Polarization: -5.27 SS G_CDS: -4.93 Total: -10.20 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.81 Total: -2.42 kcal Atomic # 8 Polarization: -1.11 SS G_CDS: -1.06 Total: -2.17 kcal Atomic # 9 Polarization: -0.06 SS G_CDS: 0.03 Total: -0.03 kcal Atomic # 14 Polarization: 0.58 SS G_CDS: -5.03 Total: -4.45 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -5.46 -9.02 -14.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_16737254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.442 kcal (2) G-P(sol) polarization free energy of solvation -5.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds