Wall clock time and date at job start Tue Mar 9 2021 13:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47470 * 2 1 4 4 C 1.53008 * 109.47398 * 239.99822 * 2 1 3 5 5 Si 1.86304 * 109.47054 * 119.99843 * 2 1 3 6 6 C 1.86297 * 109.47108 * 300.00222 * 5 2 1 7 7 C 1.86302 * 109.47279 * 180.02562 * 5 2 1 8 8 O 1.63104 * 109.46947 * 60.00272 * 5 2 1 9 9 C 1.42904 * 113.99825 * 180.02562 * 8 5 2 10 10 C 1.53001 * 109.46940 * 179.97438 * 9 8 5 11 11 O 1.42896 * 109.46904 * 65.00081 * 10 9 8 12 12 C 1.42903 * 113.99689 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47030 * 180.02562 * 12 11 10 14 14 O 1.42909 * 109.47178 * 64.99851 * 13 12 11 15 15 C 1.35899 * 116.99901 * 179.97438 * 14 13 12 16 16 C 1.38725 * 120.04508 * 0.02562 * 15 14 13 17 17 C 1.38172 * 119.99360 * 179.68049 * 16 15 14 18 18 C 1.38208 * 120.08241 * 0.57290 * 17 16 15 19 19 C 1.50699 * 119.96043 * 179.72387 * 18 17 16 20 20 O 1.42895 * 109.47044 * 254.72885 * 19 18 17 21 21 Si 1.86300 * 109.46944 * 14.72813 * 19 18 17 22 22 H 1.48503 * 109.46942 * 180.02562 * 21 19 18 23 23 H 1.48503 * 109.47276 * 299.99703 * 21 19 18 24 24 H 1.48494 * 109.47372 * 59.99692 * 21 19 18 25 25 C 1.38516 * 120.08156 * 359.44643 * 18 17 16 26 26 F 1.35100 * 119.99789 * 180.27212 * 25 18 17 27 27 C 1.38341 * 120.00611 * 0.25852 * 25 18 17 28 28 H 1.08992 * 109.47025 * 299.99951 * 1 2 3 29 29 H 1.08997 * 109.46584 * 60.00348 * 1 2 3 30 30 H 1.09007 * 109.46779 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47982 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46986 * 299.99991 * 3 2 1 33 33 H 1.09002 * 109.47382 * 59.99665 * 3 2 1 34 34 H 1.09004 * 109.46887 * 299.99848 * 4 2 1 35 35 H 1.08997 * 109.46913 * 60.00097 * 4 2 1 36 36 H 1.08993 * 109.47022 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47021 * 179.97438 * 6 5 2 38 38 H 1.09005 * 109.47091 * 299.99699 * 6 5 2 39 39 H 1.09001 * 109.47291 * 59.99704 * 6 5 2 40 40 H 1.09000 * 109.47119 * 300.00170 * 7 5 2 41 41 H 1.09004 * 109.46940 * 59.99656 * 7 5 2 42 42 H 1.08997 * 109.47234 * 180.02562 * 7 5 2 43 43 H 1.09002 * 109.46908 * 59.99960 * 9 8 5 44 44 H 1.08998 * 109.47100 * 299.99810 * 9 8 5 45 45 H 1.08997 * 109.47261 * 305.00034 * 10 9 8 46 46 H 1.08999 * 109.46567 * 185.00051 * 10 9 8 47 47 H 1.08992 * 109.47125 * 60.00509 * 12 11 10 48 48 H 1.09001 * 109.47225 * 299.99701 * 12 11 10 49 49 H 1.09000 * 109.47227 * 305.00260 * 13 12 11 50 50 H 1.08991 * 109.47248 * 185.00125 * 13 12 11 51 51 H 1.08006 * 120.00149 * 0.02562 * 16 15 14 52 52 H 1.08002 * 119.96026 * 180.31900 * 17 16 15 53 53 H 1.09001 * 109.47358 * 134.72171 * 19 18 17 54 54 H 0.96705 * 114.00010 * 180.02562 * 20 19 18 55 55 H 1.08000 * 120.04045 * 179.97438 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 14 2.1510 -0.8782 1.5212 6 6 1.5299 0.0000 3.0423 7 6 4.0140 -0.8776 1.5217 8 8 1.6073 -2.4160 1.5212 9 6 2.0285 -3.1814 2.6521 10 6 1.4627 -4.5991 2.5477 11 8 2.0311 -5.2564 1.4134 12 6 1.5671 -6.5947 1.2243 13 6 2.2386 -7.1975 -0.0113 14 8 3.6442 -7.3138 0.2194 15 6 4.3935 -7.8356 -0.7871 16 6 3.7884 -8.2272 -1.9724 17 6 4.5522 -8.7515 -2.9975 18 6 5.9174 -8.8976 -2.8393 19 6 6.7469 -9.4756 -3.9568 20 8 7.1176 -10.8164 -3.6304 21 14 5.7539 -9.4720 -5.5331 22 1 6.5711 -10.0422 -6.6342 23 1 4.5303 -10.2932 -5.3492 24 1 5.3685 -8.0787 -5.8723 25 6 6.5250 -8.5081 -1.6570 26 9 7.8604 -8.6465 -1.5063 27 6 5.7645 -7.9770 -0.6306 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7490 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.8929 -0.5141 3.9322 38 1 1.8933 1.0277 3.0423 39 1 0.4399 0.0000 3.0422 40 1 4.3777 -1.3911 0.6317 41 1 4.3769 0.1503 1.5218 42 1 4.3773 -1.3918 2.4114 43 1 1.6636 -2.7112 3.5653 44 1 3.1173 -3.2252 2.6760 45 1 0.3797 -4.5506 2.4346 46 1 1.7091 -5.1560 3.4517 47 1 0.4863 -6.5881 1.0839 48 1 1.8160 -7.1929 2.1008 49 1 2.0639 -6.5513 -0.8715 50 1 1.8198 -8.1845 -0.2073 51 1 2.7211 -8.1170 -2.0960 52 1 4.0812 -9.0514 -3.9220 53 1 7.6450 -8.8728 -4.0919 54 1 7.6548 -11.2517 -4.3066 55 1 6.2376 -7.6735 0.2916 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_11680688_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:34 Heat of formation + Delta-G solvation = -228.949019 kcal Electronic energy + Delta-G solvation = -32401.795839 eV Core-core repulsion = 27863.453306 eV Total energy + Delta-G solvation = -4538.342533 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 374.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.04595 -41.29814 -39.42684 -38.78570 -37.51125 -37.15071 -36.82041 -32.88849 -31.61161 -31.38325 -29.71945 -29.19481 -29.05870 -27.83558 -27.37828 -26.41867 -24.82060 -23.46794 -23.42695 -22.18239 -20.41059 -19.80107 -18.57226 -18.21157 -17.98575 -17.93150 -17.23651 -17.05714 -16.82568 -16.37325 -16.30287 -16.18448 -16.00044 -15.81230 -15.39340 -15.24582 -15.08952 -14.84523 -14.72025 -14.54464 -14.24518 -13.95258 -13.79433 -13.76700 -13.56108 -13.43146 -13.37448 -13.18281 -13.01028 -12.95219 -12.92420 -12.76787 -12.48041 -12.47512 -12.39013 -12.11975 -11.99085 -11.85785 -11.78956 -11.68862 -11.66273 -11.48601 -11.18141 -10.54396 -10.34153 -10.29539 -10.04399 -10.03491 -9.36511 -0.01548 0.04884 1.12414 1.46848 1.52865 1.55186 1.80808 1.88461 1.96418 2.14104 2.35639 2.50120 2.70565 3.22690 3.40588 3.56858 3.79936 3.89166 3.95729 4.07985 4.12521 4.13065 4.13898 4.16610 4.20344 4.24750 4.35721 4.42767 4.44915 4.49727 4.52420 4.60743 4.70736 4.72128 4.74550 4.78555 4.79216 4.79800 4.82058 4.83855 4.84688 4.87201 5.00143 5.07865 5.09294 5.09853 5.11296 5.20718 5.34061 5.41205 5.44419 5.53522 5.54472 5.59330 5.64243 6.22103 6.32198 6.77578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.313 2.687 6 C -0.514 4.514 7 C -0.521 4.521 8 O -0.634 6.634 9 C 0.074 3.926 10 C 0.054 3.946 11 O -0.400 6.400 12 C 0.057 3.943 13 C 0.051 3.949 14 O -0.317 6.317 15 C 0.162 3.838 16 C -0.209 4.209 17 C -0.058 4.058 18 C -0.164 4.164 19 C -0.091 4.091 20 O -0.564 6.564 21 Si 0.992 3.008 22 H -0.253 1.253 23 H -0.252 1.252 24 H -0.253 1.253 25 C 0.145 3.855 26 F -0.138 7.138 27 C -0.204 4.204 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.107 0.893 51 H 0.167 0.833 52 H 0.154 0.846 53 H 0.079 0.921 54 H 0.397 0.603 55 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 0.086 0.232 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.443 2.557 6 C -0.616 4.616 7 C -0.621 4.621 8 O -0.594 6.594 9 C -0.001 4.001 10 C -0.022 4.022 11 O -0.320 6.320 12 C -0.019 4.019 13 C -0.024 4.024 14 O -0.230 6.230 15 C 0.115 3.885 16 C -0.228 4.228 17 C -0.075 4.075 18 C -0.165 4.165 19 C -0.199 4.199 20 O -0.373 6.373 21 Si 0.813 3.187 22 H -0.177 1.177 23 H -0.176 1.176 24 H -0.177 1.177 25 C 0.126 3.874 26 F -0.116 7.116 27 C -0.223 4.223 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.114 0.886 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.124 0.876 51 H 0.184 0.816 52 H 0.171 0.829 53 H 0.097 0.903 54 H 0.248 0.752 55 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.145 0.194 -0.061 5.149 hybrid contribution 1.137 0.208 0.193 1.172 sum -4.008 0.402 0.132 4.030 Atomic orbital electron populations 1.21522 0.93992 1.01767 1.01921 1.25893 1.00595 1.02929 1.12986 1.21599 1.01122 0.94719 1.02317 1.21516 1.00713 0.99959 0.97048 0.76249 0.61997 0.53029 0.64434 1.27042 1.07028 1.09749 1.17797 1.27168 1.26211 1.04636 1.04111 1.85385 1.79215 1.46468 1.48324 1.22309 0.99290 0.90810 0.87696 1.22822 0.98449 0.92021 0.88928 1.87988 1.68578 1.26789 1.48671 1.22709 0.98603 0.83338 0.97237 1.23261 0.77334 1.02271 0.99495 1.86137 1.21504 1.77138 1.38244 1.18688 0.90199 0.91794 0.87786 1.21545 1.02465 1.05782 0.92973 1.21009 0.91455 0.95324 0.99746 1.19516 0.95192 1.06195 0.95603 1.24885 1.03659 0.85915 1.05438 1.86472 1.75302 1.25312 1.50235 0.85107 0.79014 0.81086 0.73449 1.17742 1.17621 1.17707 1.17250 0.77232 0.98680 0.94251 1.91488 1.30674 1.93489 1.95967 1.20381 0.92439 1.08470 1.01044 0.91870 0.93330 0.92552 0.92126 0.93067 0.91598 0.92760 0.93215 0.92641 0.90831 0.90402 0.90796 0.91923 0.90484 0.91336 0.88890 0.92030 0.91454 0.90367 0.88603 0.91632 0.90235 0.87557 0.81581 0.82851 0.90319 0.75219 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.09 7.85 71.98 0.56 0.47 16 2 C -0.38 -0.22 0.53 -10.79 -0.01 -0.23 16 3 C -0.14 0.06 7.85 71.98 0.56 0.62 16 4 C -0.14 -0.33 7.85 71.98 0.56 0.24 16 5 Si 1.31 -1.47 8.45 68.60 0.58 -0.89 16 6 C -0.51 1.17 8.50 113.37 0.96 2.13 16 7 C -0.52 -0.47 8.50 113.37 0.96 0.49 16 8 O -0.63 -1.20 8.52 -144.34 -1.23 -2.43 16 9 C 0.07 -0.09 5.51 71.98 0.40 0.30 16 10 C 0.05 -0.08 6.32 71.98 0.45 0.37 16 11 O -0.40 -1.34 10.27 -135.05 -1.39 -2.73 16 12 C 0.06 -0.15 6.32 71.98 0.45 0.30 16 13 C 0.05 -0.11 5.12 71.98 0.37 0.25 16 14 O -0.32 -1.51 10.10 -87.77 -0.89 -2.39 16 15 C 0.16 0.84 6.69 22.50 0.15 0.99 16 16 C -0.21 -0.26 9.04 22.37 0.20 -0.06 16 17 C -0.06 -0.13 8.65 22.25 0.19 0.06 16 18 C -0.16 -0.97 5.30 -19.81 -0.11 -1.07 16 19 C -0.09 -0.20 2.44 71.24 0.17 -0.03 16 20 O -0.56 -1.92 12.86 -148.98 -1.92 -3.84 16 21 Si 0.99 -1.63 25.48 68.60 1.75 0.12 16 22 H -0.25 0.46 7.11 99.48 0.71 1.17 16 23 H -0.25 0.23 6.74 99.48 0.67 0.90 16 24 H -0.25 0.17 7.11 99.48 0.71 0.88 16 25 C 0.15 1.29 7.24 22.36 0.16 1.45 16 26 F -0.14 -1.53 16.75 44.97 0.75 -0.78 16 27 C -0.20 -1.55 9.97 22.41 0.22 -1.33 16 28 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 29 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.06 0.07 7.97 -2.38 -0.02 0.06 16 31 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 32 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 34 H 0.05 0.20 7.97 -2.39 -0.02 0.18 16 35 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.05 0.11 7.79 -2.39 -0.02 0.09 16 37 H 0.07 -0.26 7.48 -2.39 -0.02 -0.28 16 38 H 0.08 -0.21 7.79 -2.38 -0.02 -0.23 16 39 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 40 H 0.06 0.19 7.79 -2.39 -0.02 0.17 16 41 H 0.08 -0.02 7.79 -2.39 -0.02 -0.04 16 42 H 0.07 0.02 7.48 -2.39 -0.02 0.00 16 43 H 0.09 -0.61 7.21 -2.39 -0.02 -0.63 16 44 H 0.06 -0.07 7.22 -2.39 -0.02 -0.08 16 45 H 0.07 -0.23 8.14 -2.39 -0.02 -0.24 16 46 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 48 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 49 H 0.08 -0.23 7.66 -2.39 -0.02 -0.25 16 50 H 0.11 -0.81 7.66 -2.39 -0.02 -0.83 16 51 H 0.17 -0.85 6.30 -2.91 -0.02 -0.87 16 52 H 0.15 -0.32 4.88 -2.91 -0.01 -0.33 16 53 H 0.08 0.05 7.90 -2.39 -0.02 0.03 16 54 H 0.40 -2.41 8.74 -74.05 -0.65 -3.05 16 55 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 Total: 0.00 -17.10 442.87 4.88 -12.22 By element: Atomic # 1 Polarization: -5.18 SS G_CDS: 0.93 Total: -4.24 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.29 Total: 4.97 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -5.42 Total: -11.39 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.75 Total: -0.78 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.33 Total: -0.78 kcal Total: -17.10 4.88 -12.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.728 kcal (2) G-P(sol) polarization free energy of solvation -17.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds