Wall clock time and date at job start Tue Mar 9 2021 13:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47303 * 2 1 4 4 C 1.53004 * 109.46819 * 240.00151 * 2 1 3 5 5 Si 1.86302 * 109.47024 * 120.00253 * 2 1 3 6 6 C 1.86300 * 109.47184 * 299.99611 * 5 2 1 7 7 C 1.86306 * 109.46845 * 179.97438 * 5 2 1 8 8 O 1.63094 * 109.47050 * 59.99870 * 5 2 1 9 9 C 1.42907 * 113.99648 * 179.97438 * 8 5 2 10 10 C 1.52998 * 109.46743 * 180.02562 * 9 8 5 11 11 C 1.53000 * 109.46858 * 180.02562 * 10 9 8 12 12 O 1.42909 * 109.47178 * 179.97438 * 11 10 9 13 13 C 1.35899 * 116.99901 * 179.97438 * 12 11 10 14 14 C 1.38725 * 120.04508 * 0.02562 * 13 12 11 15 15 C 1.38172 * 119.99360 * 179.68049 * 14 13 12 16 16 C 1.38208 * 120.08241 * 0.57290 * 15 14 13 17 17 C 1.50699 * 119.96043 * 179.72387 * 16 15 14 18 18 O 1.42895 * 109.47044 * 254.72885 * 17 16 15 19 19 Si 1.86300 * 109.46944 * 14.72813 * 17 16 15 20 20 H 1.48503 * 109.46942 * 180.02562 * 19 17 16 21 21 H 1.48503 * 109.47276 * 299.99703 * 19 17 16 22 22 H 1.48494 * 109.47372 * 59.99692 * 19 17 16 23 23 C 1.38516 * 120.08156 * 359.44643 * 16 15 14 24 24 F 1.35100 * 119.99789 * 180.27212 * 23 16 15 25 25 C 1.38341 * 120.00611 * 0.25852 * 23 16 15 26 26 H 1.09007 * 109.47079 * 300.00131 * 1 2 3 27 27 H 1.09005 * 109.47260 * 59.99869 * 1 2 3 28 28 H 1.08995 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47310 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47069 * 300.00248 * 3 2 1 31 31 H 1.09007 * 109.47160 * 59.99919 * 3 2 1 32 32 H 1.08995 * 109.47070 * 299.99926 * 4 2 1 33 33 H 1.09000 * 109.46898 * 60.00283 * 4 2 1 34 34 H 1.09000 * 109.46670 * 180.02562 * 4 2 1 35 35 H 1.08991 * 109.47016 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.46995 * 300.00629 * 6 5 2 37 37 H 1.09000 * 109.46673 * 60.00182 * 6 5 2 38 38 H 1.09000 * 109.46733 * 300.00071 * 7 5 2 39 39 H 1.08995 * 109.47319 * 59.99781 * 7 5 2 40 40 H 1.09000 * 109.46976 * 180.02562 * 7 5 2 41 41 H 1.09000 * 109.47080 * 60.00414 * 9 8 5 42 42 H 1.08991 * 109.47509 * 300.00208 * 9 8 5 43 43 H 1.09000 * 109.47439 * 60.00691 * 10 9 8 44 44 H 1.09001 * 109.47202 * 300.00109 * 10 9 8 45 45 H 1.09000 * 109.47227 * 60.00209 * 11 10 9 46 46 H 1.08991 * 109.47248 * 300.00073 * 11 10 9 47 47 H 1.08006 * 120.00149 * 0.02562 * 14 13 12 48 48 H 1.08002 * 119.96026 * 180.31900 * 15 14 13 49 49 H 1.09001 * 109.47358 * 134.72171 * 17 16 15 50 50 H 0.96705 * 114.00010 * 180.02562 * 18 17 16 51 51 H 1.08000 * 120.04045 * 179.97438 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8790 1.5207 8 8 1.6073 -2.4160 1.5210 9 6 2.0294 -3.1817 2.6514 10 6 1.4645 -4.5997 2.5464 11 6 1.9159 -5.4194 3.7568 12 8 1.3878 -6.7437 3.6591 13 6 1.6974 -7.6069 4.6621 14 6 2.4927 -7.1877 5.7186 15 6 2.8014 -8.0643 6.7410 16 6 2.3286 -9.3625 6.7069 17 6 2.6721 -10.3181 7.8204 18 8 3.6586 -11.2459 7.3645 19 14 3.3418 -9.3635 9.2734 20 1 3.6809 -10.3052 10.3704 21 1 4.5624 -8.6252 8.8605 22 1 2.3167 -8.3992 9.7471 23 6 1.5346 -9.7848 5.6534 24 9 1.0688 -11.0526 5.6245 25 6 1.2183 -8.9083 4.6308 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7216 -1.2491 35 1 1.8937 -0.5137 3.9322 36 1 1.8934 1.0276 3.0422 37 1 0.4400 -0.0001 3.0423 38 1 4.3769 -1.3930 0.6306 39 1 4.3777 0.1485 1.5204 40 1 4.3773 -1.3932 2.4104 41 1 1.6653 -2.7119 3.5650 42 1 3.1182 -3.2256 2.6744 43 1 1.8290 -5.0694 1.6328 44 1 0.3756 -4.5562 2.5231 45 1 1.5511 -4.9497 4.6703 46 1 3.0047 -5.4629 3.7806 47 1 2.8659 -6.1745 5.7447 48 1 3.4163 -7.7357 7.5659 49 1 1.7762 -10.8599 8.1236 50 1 3.9278 -11.8929 8.0309 51 1 0.5996 -9.2371 3.8089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_11680688_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:21 Heat of formation + Delta-G solvation = -198.022926 kcal Electronic energy + Delta-G solvation = -27672.076694 eV Core-core repulsion = 23609.295028 eV Total energy + Delta-G solvation = -4062.781666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.83249 -41.29256 -39.16540 -38.27954 -37.28514 -36.88220 -33.82272 -32.07345 -31.48309 -29.50528 -29.15368 -27.91381 -27.43555 -27.23208 -26.02989 -24.22678 -22.81134 -22.13084 -20.47544 -19.67739 -18.56693 -18.19280 -17.61979 -17.59350 -17.05923 -16.92495 -16.53002 -16.12786 -16.02099 -16.00304 -15.59401 -15.24248 -15.08126 -14.92151 -14.74751 -14.56906 -14.15984 -14.07313 -13.79349 -13.67049 -13.58419 -13.51348 -13.31813 -13.24111 -13.00281 -12.98141 -12.93702 -12.80553 -12.44851 -12.39437 -12.21260 -12.04285 -11.88214 -11.78134 -11.75357 -11.70663 -11.49097 -11.40784 -10.44181 -10.36628 -10.12878 -9.93787 -9.32893 0.06907 0.10726 1.06336 1.26815 1.37245 1.42901 1.67122 1.82231 1.94971 1.98130 2.39646 2.41332 3.28217 3.38201 3.56842 3.71782 3.78395 3.84728 3.88339 3.93959 4.07236 4.07536 4.12070 4.13191 4.16514 4.23388 4.36793 4.42597 4.44336 4.59642 4.63044 4.65436 4.66044 4.76782 4.80082 4.81435 4.90864 4.92268 4.95637 4.96032 5.06327 5.06526 5.13581 5.15729 5.16274 5.29568 5.35867 5.36904 5.45804 5.48201 5.53615 5.60821 6.22712 6.56380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.511 4.511 7 C -0.512 4.512 8 O -0.623 6.623 9 C 0.090 3.910 10 C -0.124 4.124 11 C 0.056 3.944 12 O -0.305 6.305 13 C 0.168 3.832 14 C -0.215 4.215 15 C -0.053 4.053 16 C -0.150 4.150 17 C -0.078 4.078 18 O -0.543 6.543 19 Si 0.950 3.050 20 H -0.253 1.253 21 H -0.247 1.247 22 H -0.247 1.247 23 C 0.169 3.831 24 F -0.125 7.125 25 C -0.190 4.190 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.076 0.924 50 H 0.381 0.619 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 2.764 2.642 3.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.420 2.580 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.014 3.986 10 C -0.162 4.162 11 C -0.019 4.019 12 O -0.218 6.218 13 C 0.122 3.878 14 C -0.234 4.234 15 C -0.071 4.071 16 C -0.151 4.151 17 C -0.188 4.188 18 O -0.349 6.349 19 Si 0.772 3.228 20 H -0.177 1.177 21 H -0.170 1.170 22 H -0.170 1.170 23 C 0.149 3.851 24 F -0.103 7.103 25 C -0.210 4.210 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.157 0.843 48 H 0.153 0.847 49 H 0.094 0.906 50 H 0.228 0.772 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.130 3.319 2.470 4.289 hybrid contribution 0.163 -0.193 0.305 0.396 sum 1.294 3.126 2.775 4.376 Atomic orbital electron populations 1.21515 0.93780 1.02039 1.01816 1.25788 1.00723 1.02646 1.12712 1.21558 1.00771 0.94894 1.02174 1.21515 1.00602 1.00269 0.96767 0.76698 0.63004 0.53309 0.65032 1.27035 1.07065 1.09540 1.17687 1.27038 1.25033 1.04790 1.04479 1.85335 1.79316 1.46079 1.47493 1.21794 0.98139 0.91457 0.87220 1.21529 1.03479 0.93197 0.97953 1.22798 0.98865 0.80475 0.99762 1.86075 1.70558 1.22028 1.43176 1.18568 0.92773 0.89307 0.87166 1.21228 1.04499 1.01729 0.95932 1.20733 0.96497 0.91819 0.98045 1.19195 1.03023 0.95204 0.97673 1.24616 0.95467 0.95769 1.02985 1.86528 1.58831 1.46722 1.42835 0.85716 0.81215 0.80095 0.75804 1.17702 1.17049 1.17011 1.17005 0.94761 0.79222 0.94063 1.91538 1.86351 1.36239 1.96157 1.20288 1.07420 0.91765 1.01481 0.92706 0.92761 0.92132 0.92513 0.92469 0.92519 0.92132 0.92760 0.92698 0.91506 0.90662 0.90816 0.90814 0.90662 0.91504 0.92332 0.92329 0.89476 0.89489 0.91262 0.91250 0.84292 0.84674 0.90604 0.77187 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 7.85 37.16 0.29 0.32 16 2 C -0.38 0.25 0.53 -90.62 -0.05 0.20 16 3 C -0.14 0.13 7.85 37.16 0.29 0.42 16 4 C -0.13 0.03 7.85 37.16 0.29 0.32 16 5 Si 1.29 -2.16 8.45 -169.99 -1.44 -3.60 16 6 C -0.51 0.73 8.50 101.05 0.86 1.59 16 7 C -0.51 0.70 8.50 101.05 0.86 1.56 16 8 O -0.62 0.30 8.56 -35.23 -0.30 0.00 16 9 C 0.09 -0.19 5.12 37.16 0.19 0.00 16 10 C -0.12 0.19 5.95 -26.73 -0.16 0.03 16 11 C 0.06 -0.10 4.74 37.16 0.18 0.07 16 12 O -0.31 -0.33 10.14 -19.42 -0.20 -0.53 16 13 C 0.17 0.24 6.69 -39.23 -0.26 -0.02 16 14 C -0.22 -0.02 9.04 -39.43 -0.36 -0.38 16 15 C -0.05 -0.03 8.65 -39.62 -0.34 -0.38 16 16 C -0.15 -0.30 5.30 -104.53 -0.55 -0.85 16 17 C -0.08 -0.03 2.44 36.01 0.09 0.06 16 18 O -0.54 -0.60 12.86 -35.23 -0.45 -1.05 16 19 Si 0.95 -0.89 25.48 -169.99 -4.33 -5.22 16 20 H -0.25 0.19 7.11 56.52 0.40 0.59 16 21 H -0.25 0.07 6.74 56.52 0.38 0.45 16 22 H -0.25 0.13 7.11 56.52 0.40 0.53 16 23 C 0.17 0.50 7.24 -39.44 -0.29 0.21 16 24 F -0.12 -0.49 16.75 2.25 0.04 -0.45 16 25 C -0.19 -0.41 9.97 -39.37 -0.39 -0.80 16 26 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 0.00 7.96 -51.93 -0.41 -0.41 16 29 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 30 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 32 H 0.06 0.00 7.96 -51.93 -0.41 -0.41 16 33 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 34 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 35 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 36 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 37 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 38 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 39 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 40 H 0.07 -0.12 7.48 -51.93 -0.39 -0.51 16 41 H 0.06 -0.21 7.21 -51.93 -0.37 -0.59 16 42 H 0.06 -0.21 7.21 -51.93 -0.37 -0.58 16 43 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 44 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 45 H 0.07 -0.23 7.66 -51.93 -0.40 -0.63 16 46 H 0.07 -0.22 7.66 -51.93 -0.40 -0.62 16 47 H 0.14 -0.35 6.30 -52.48 -0.33 -0.69 16 48 H 0.14 -0.15 4.88 -52.49 -0.26 -0.41 16 49 H 0.08 -0.05 7.90 -51.93 -0.41 -0.46 16 50 H 0.38 -1.32 8.74 45.56 0.40 -0.92 16 51 H 0.15 0.17 8.06 -52.49 -0.42 -0.25 16 LS Contribution 408.93 15.07 6.16 6.16 Total: 0.00 -5.73 408.93 -8.21 -13.94 By element: Atomic # 1 Polarization: -3.27 SS G_CDS: -8.34 Total: -11.60 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 0.65 Total: 2.35 kcal Atomic # 8 Polarization: -0.63 SS G_CDS: -0.95 Total: -1.58 kcal Atomic # 9 Polarization: -0.49 SS G_CDS: 0.04 Total: -0.45 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: -5.77 Total: -8.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -5.73 -8.21 -13.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.086 kcal (2) G-P(sol) polarization free energy of solvation -5.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds