Wall clock time and date at job start Tue Mar 9 2021 13:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47303 * 2 1 4 4 C 1.53004 * 109.46819 * 240.00151 * 2 1 3 5 5 Si 1.86302 * 109.47024 * 120.00253 * 2 1 3 6 6 C 1.86300 * 109.47184 * 299.99611 * 5 2 1 7 7 C 1.86306 * 109.46845 * 179.97438 * 5 2 1 8 8 O 1.63094 * 109.47050 * 59.99870 * 5 2 1 9 9 C 1.42907 * 113.99648 * 179.97438 * 8 5 2 10 10 C 1.52998 * 109.46743 * 180.02562 * 9 8 5 11 11 C 1.53000 * 109.46858 * 180.02562 * 10 9 8 12 12 O 1.42909 * 109.47178 * 179.97438 * 11 10 9 13 13 C 1.35899 * 116.99901 * 179.97438 * 12 11 10 14 14 C 1.38725 * 120.04508 * 0.02562 * 13 12 11 15 15 C 1.38172 * 119.99360 * 179.68049 * 14 13 12 16 16 C 1.38208 * 120.08241 * 0.57290 * 15 14 13 17 17 C 1.50699 * 119.96043 * 179.72387 * 16 15 14 18 18 O 1.42895 * 109.47044 * 254.72885 * 17 16 15 19 19 Si 1.86300 * 109.46944 * 14.72813 * 17 16 15 20 20 H 1.48503 * 109.46942 * 180.02562 * 19 17 16 21 21 H 1.48503 * 109.47276 * 299.99703 * 19 17 16 22 22 H 1.48494 * 109.47372 * 59.99692 * 19 17 16 23 23 C 1.38516 * 120.08156 * 359.44643 * 16 15 14 24 24 F 1.35100 * 119.99789 * 180.27212 * 23 16 15 25 25 C 1.38341 * 120.00611 * 0.25852 * 23 16 15 26 26 H 1.09007 * 109.47079 * 300.00131 * 1 2 3 27 27 H 1.09005 * 109.47260 * 59.99869 * 1 2 3 28 28 H 1.08995 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47310 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47069 * 300.00248 * 3 2 1 31 31 H 1.09007 * 109.47160 * 59.99919 * 3 2 1 32 32 H 1.08995 * 109.47070 * 299.99926 * 4 2 1 33 33 H 1.09000 * 109.46898 * 60.00283 * 4 2 1 34 34 H 1.09000 * 109.46670 * 180.02562 * 4 2 1 35 35 H 1.08991 * 109.47016 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.46995 * 300.00629 * 6 5 2 37 37 H 1.09000 * 109.46673 * 60.00182 * 6 5 2 38 38 H 1.09000 * 109.46733 * 300.00071 * 7 5 2 39 39 H 1.08995 * 109.47319 * 59.99781 * 7 5 2 40 40 H 1.09000 * 109.46976 * 180.02562 * 7 5 2 41 41 H 1.09000 * 109.47080 * 60.00414 * 9 8 5 42 42 H 1.08991 * 109.47509 * 300.00208 * 9 8 5 43 43 H 1.09000 * 109.47439 * 60.00691 * 10 9 8 44 44 H 1.09001 * 109.47202 * 300.00109 * 10 9 8 45 45 H 1.09000 * 109.47227 * 60.00209 * 11 10 9 46 46 H 1.08991 * 109.47248 * 300.00073 * 11 10 9 47 47 H 1.08006 * 120.00149 * 0.02562 * 14 13 12 48 48 H 1.08002 * 119.96026 * 180.31900 * 15 14 13 49 49 H 1.09001 * 109.47358 * 134.72171 * 17 16 15 50 50 H 0.96705 * 114.00010 * 180.02562 * 18 17 16 51 51 H 1.08000 * 120.04045 * 179.97438 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8790 1.5207 8 8 1.6073 -2.4160 1.5210 9 6 2.0294 -3.1817 2.6514 10 6 1.4645 -4.5997 2.5464 11 6 1.9159 -5.4194 3.7568 12 8 1.3878 -6.7437 3.6591 13 6 1.6974 -7.6069 4.6621 14 6 2.4927 -7.1877 5.7186 15 6 2.8014 -8.0643 6.7410 16 6 2.3286 -9.3625 6.7069 17 6 2.6721 -10.3181 7.8204 18 8 3.6586 -11.2459 7.3645 19 14 3.3418 -9.3635 9.2734 20 1 3.6809 -10.3052 10.3704 21 1 4.5624 -8.6252 8.8605 22 1 2.3167 -8.3992 9.7471 23 6 1.5346 -9.7848 5.6534 24 9 1.0688 -11.0526 5.6245 25 6 1.2183 -8.9083 4.6308 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7216 -1.2491 35 1 1.8937 -0.5137 3.9322 36 1 1.8934 1.0276 3.0422 37 1 0.4400 -0.0001 3.0423 38 1 4.3769 -1.3930 0.6306 39 1 4.3777 0.1485 1.5204 40 1 4.3773 -1.3932 2.4104 41 1 1.6653 -2.7119 3.5650 42 1 3.1182 -3.2256 2.6744 43 1 1.8290 -5.0694 1.6328 44 1 0.3756 -4.5562 2.5231 45 1 1.5511 -4.9497 4.6703 46 1 3.0047 -5.4629 3.7806 47 1 2.8659 -6.1745 5.7447 48 1 3.4163 -7.7357 7.5659 49 1 1.7762 -10.8599 8.1236 50 1 3.9278 -11.8929 8.0309 51 1 0.5996 -9.2371 3.8089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_11680688_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:21 Heat of formation + Delta-G solvation = -190.301536 kcal Electronic energy + Delta-G solvation = -27671.741870 eV Core-core repulsion = 23609.295028 eV Total energy + Delta-G solvation = -4062.446841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.03753 -41.29917 -39.14530 -38.15555 -37.28789 -36.82027 -33.72238 -32.09419 -31.51209 -29.36180 -29.04714 -27.83577 -27.36893 -27.14636 -25.97607 -24.24414 -22.74898 -22.09028 -20.41482 -19.70927 -18.56761 -18.18138 -17.54316 -17.48194 -17.12778 -16.93002 -16.65045 -16.04712 -16.00217 -15.94450 -15.55364 -15.18108 -15.09706 -14.85425 -14.70828 -14.53586 -14.09147 -13.96459 -13.77653 -13.73925 -13.47525 -13.36669 -13.16705 -13.15397 -12.95077 -12.93185 -12.86405 -12.74575 -12.38916 -12.29733 -12.12338 -11.99174 -11.81106 -11.71108 -11.68750 -11.63092 -11.32827 -11.27713 -10.33495 -10.28747 -10.04525 -10.02616 -9.36946 -0.00880 0.04968 1.13318 1.43351 1.47860 1.53800 1.79832 1.89367 2.01767 2.15185 2.36079 2.52770 3.23942 3.41590 3.57778 3.80871 3.91345 3.92568 3.99505 4.08228 4.12838 4.13181 4.17620 4.22193 4.39438 4.43844 4.44952 4.47211 4.50172 4.76140 4.76743 4.79531 4.80160 4.81721 4.83184 4.83496 4.88059 5.00571 5.05325 5.08562 5.09652 5.09922 5.11903 5.12556 5.22809 5.35654 5.41512 5.45559 5.55563 5.57416 5.63137 5.66729 6.25895 6.77701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.319 2.681 6 C -0.517 4.517 7 C -0.518 4.518 8 O -0.642 6.642 9 C 0.079 3.921 10 C -0.122 4.122 11 C 0.049 3.951 12 O -0.322 6.322 13 C 0.161 3.839 14 C -0.207 4.207 15 C -0.058 4.058 16 C -0.163 4.163 17 C -0.092 4.092 18 O -0.565 6.565 19 Si 0.993 3.007 20 H -0.255 1.255 21 H -0.252 1.252 22 H -0.251 1.251 23 C 0.144 3.856 24 F -0.138 7.138 25 C -0.203 4.203 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.170 0.830 48 H 0.155 0.845 49 H 0.079 0.921 50 H 0.397 0.603 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 3.871 4.095 6.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.449 2.551 6 C -0.619 4.619 7 C -0.620 4.620 8 O -0.601 6.601 9 C 0.004 3.996 10 C -0.160 4.160 11 C -0.025 4.025 12 O -0.236 6.236 13 C 0.115 3.885 14 C -0.226 4.226 15 C -0.076 4.076 16 C -0.165 4.165 17 C -0.200 4.200 18 O -0.374 6.374 19 Si 0.814 3.186 20 H -0.179 1.179 21 H -0.176 1.176 22 H -0.175 1.175 23 C 0.125 3.875 24 F -0.117 7.117 25 C -0.223 4.223 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.188 0.812 48 H 0.172 0.828 49 H 0.097 0.903 50 H 0.248 0.752 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.227 4.418 3.907 6.304 hybrid contribution -0.201 -0.533 -0.209 0.607 sum 2.026 3.885 3.699 5.734 Atomic orbital electron populations 1.21542 0.94380 1.01699 1.01803 1.25990 1.00340 1.03117 1.13435 1.21600 1.01295 0.94693 1.02171 1.21542 1.01032 0.99968 0.96892 0.76131 0.62513 0.52562 0.63899 1.27084 1.06831 1.09857 1.18144 1.27096 1.25164 1.05032 1.04677 1.85324 1.79734 1.46723 1.48363 1.22021 0.99281 0.90851 0.87443 1.21495 1.02839 0.93860 0.97781 1.23035 0.99964 0.79184 1.00348 1.86057 1.71003 1.23207 1.43286 1.18650 0.93056 0.89078 0.87740 1.21571 1.03205 1.02965 0.94811 1.21022 0.96442 0.91325 0.98786 1.19533 1.02830 0.96286 0.97802 1.24906 0.95827 0.95989 1.03298 1.86473 1.59022 1.47516 1.44389 0.85101 0.80210 0.79122 0.74187 1.17947 1.17620 1.17453 1.17266 0.96077 0.79007 0.95174 1.91490 1.86728 1.37133 1.96328 1.20398 1.07877 0.92514 1.01492 0.92013 0.93512 0.92618 0.91761 0.93320 0.91732 0.92630 0.93505 0.92050 0.90603 0.90437 0.91247 0.91308 0.90438 0.90633 0.90486 0.90601 0.90680 0.90563 0.89268 0.89489 0.81243 0.82791 0.90320 0.75232 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 2 C -0.39 0.40 0.53 -10.79 -0.01 0.39 16 3 C -0.14 0.26 7.85 71.98 0.56 0.83 16 4 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 5 Si 1.32 -5.30 8.45 68.60 0.58 -4.72 16 6 C -0.52 2.10 8.50 113.37 0.96 3.06 16 7 C -0.52 2.00 8.50 113.37 0.96 2.97 16 8 O -0.64 0.88 8.56 -148.98 -1.28 -0.40 16 9 C 0.08 -0.43 5.12 71.98 0.37 -0.06 16 10 C -0.12 0.41 5.95 30.59 0.18 0.59 16 11 C 0.05 -0.24 4.74 71.98 0.34 0.10 16 12 O -0.32 -0.70 10.14 -92.41 -0.94 -1.63 16 13 C 0.16 0.48 6.69 22.50 0.15 0.63 16 14 C -0.21 0.21 9.04 22.37 0.20 0.42 16 15 C -0.06 -0.03 8.65 22.25 0.19 0.16 16 16 C -0.16 -0.73 5.30 -19.81 -0.11 -0.84 16 17 C -0.09 -0.10 2.44 71.24 0.17 0.07 16 18 O -0.56 -1.52 12.86 -148.98 -1.92 -3.43 16 19 Si 0.99 -2.78 25.48 68.60 1.75 -1.04 16 20 H -0.26 0.67 7.11 99.48 0.71 1.37 16 21 H -0.25 0.52 6.74 99.48 0.67 1.19 16 22 H -0.25 0.57 7.11 99.48 0.71 1.28 16 23 C 0.14 1.07 7.24 22.36 0.16 1.24 16 24 F -0.14 -1.39 16.75 44.97 0.75 -0.64 16 25 C -0.20 -1.18 9.97 22.41 0.22 -0.96 16 26 H 0.06 -0.09 7.79 -2.38 -0.02 -0.11 16 27 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 28 H 0.05 0.06 7.96 -2.39 -0.02 0.04 16 29 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 30 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.06 -0.23 7.79 -2.38 -0.02 -0.25 16 32 H 0.05 0.06 7.96 -2.39 -0.02 0.04 16 33 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 35 H 0.07 -0.44 7.48 -2.39 -0.02 -0.46 16 36 H 0.08 -0.34 7.79 -2.39 -0.02 -0.36 16 37 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 38 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 39 H 0.08 -0.33 7.79 -2.39 -0.02 -0.34 16 40 H 0.07 -0.42 7.48 -2.39 -0.02 -0.44 16 41 H 0.08 -0.71 7.21 -2.39 -0.02 -0.73 16 42 H 0.08 -0.69 7.21 -2.39 -0.02 -0.70 16 43 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.09 -0.80 7.66 -2.39 -0.02 -0.81 16 46 H 0.09 -0.73 7.66 -2.39 -0.02 -0.75 16 47 H 0.17 -1.35 6.30 -2.91 -0.02 -1.37 16 48 H 0.15 -0.60 4.88 -2.91 -0.01 -0.61 16 49 H 0.08 -0.03 7.90 -2.39 -0.02 -0.05 16 50 H 0.40 -2.64 8.74 -74.05 -0.65 -3.29 16 51 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 Total: 0.00 -14.27 408.93 5.43 -8.84 By element: Atomic # 1 Polarization: -7.59 SS G_CDS: 0.97 Total: -6.62 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.51 Total: 9.65 kcal Atomic # 8 Polarization: -1.34 SS G_CDS: -4.13 Total: -5.47 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.75 Total: -0.64 kcal Atomic # 14 Polarization: -8.08 SS G_CDS: 2.33 Total: -5.75 kcal Total: -14.27 5.43 -8.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.466 kcal (2) G-P(sol) polarization free energy of solvation -14.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds