Wall clock time and date at job start Tue Mar 9 2021 13:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 109.47145 * 2 1 4 4 C 1.86299 * 109.46866 * 239.99880 * 2 1 3 5 5 C 1.86804 * 109.47187 * 120.00115 * 2 1 3 6 6 C 1.38231 * 119.99699 * 89.99768 * 5 2 1 7 7 C 1.38243 * 119.99530 * 180.02562 * 6 5 2 8 8 C 1.38237 * 120.00096 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.99966 * 179.97438 * 8 7 6 10 10 O 1.42906 * 109.46713 * 90.00637 * 9 8 7 11 11 C 1.35896 * 116.99879 * 180.02562 * 10 9 8 12 12 C 1.38735 * 120.04431 * 359.97438 * 11 10 9 13 13 C 1.38175 * 119.99572 * 179.75184 * 12 11 10 14 14 C 1.38214 * 120.07880 * 0.54795 * 13 12 11 15 15 C 1.50697 * 119.95814 * 179.72888 * 14 13 12 16 16 O 1.42906 * 109.46831 * 254.72617 * 15 14 13 17 17 Si 1.86300 * 109.47007 * 14.72006 * 15 14 13 18 18 H 1.48503 * 109.46942 * 60.00611 * 17 15 14 19 19 H 1.48503 * 109.47276 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47372 * 300.00074 * 17 15 14 21 21 C 1.38521 * 120.08567 * 359.44840 * 14 13 12 22 22 F 1.35093 * 119.99873 * 180.29905 * 21 14 13 23 23 C 1.38342 * 120.00329 * 0.27684 * 21 14 13 24 24 C 1.38232 * 119.99665 * 0.25525 * 8 7 6 25 25 C 1.38236 * 119.99571 * 270.01962 * 5 2 1 26 26 H 1.09004 * 109.46842 * 299.99995 * 1 2 3 27 27 H 1.09001 * 109.47098 * 59.99847 * 1 2 3 28 28 H 1.09001 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47082 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46852 * 299.99814 * 3 2 1 31 31 H 1.08996 * 109.47105 * 60.00033 * 3 2 1 32 32 H 1.08999 * 109.47494 * 300.00130 * 4 2 1 33 33 H 1.09001 * 109.47040 * 60.00236 * 4 2 1 34 34 H 1.09004 * 109.47195 * 179.97438 * 4 2 1 35 35 H 1.07993 * 120.00727 * 0.02562 * 6 5 2 36 36 H 1.08000 * 119.99524 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.47566 * 330.00513 * 9 8 7 38 38 H 1.08997 * 109.47456 * 209.99928 * 9 8 7 39 39 H 1.08004 * 120.00024 * 0.02562 * 12 11 10 40 40 H 1.07993 * 119.96275 * 180.26775 * 13 12 11 41 41 H 1.09000 * 109.47374 * 134.72190 * 15 14 13 42 42 H 0.96693 * 114.00047 * 60.00191 * 16 15 14 43 43 H 1.07999 * 120.04283 * 179.97438 * 23 21 14 44 44 H 1.08000 * 119.99992 * 179.71709 * 24 8 7 45 45 H 1.07997 * 120.00161 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5252 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8949 2.6198 8 6 3.4068 -2.1840 3.7827 9 6 3.9080 -2.8946 5.0135 10 8 5.3371 -2.8955 5.0141 11 6 5.9531 -3.5017 6.0628 12 6 5.1976 -4.0831 7.0706 13 6 5.8251 -4.7037 8.1339 14 6 7.2052 -4.7362 8.2006 15 6 7.8867 -5.4084 9.3645 16 8 8.4136 -4.4150 10.2464 17 14 6.6540 -6.4621 10.2817 18 1 6.1065 -7.4944 9.3653 19 1 7.3254 -7.1240 11.4291 20 1 5.5477 -5.6074 10.7822 21 6 7.9629 -4.1568 7.1961 22 9 9.3117 -4.1949 7.2601 23 6 7.3383 -3.5395 6.1271 24 6 3.1719 -0.8222 3.8183 25 6 2.7157 -0.1697 2.6882 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1206 2.2703 -0.8901 31 1 2.1207 2.2703 0.8899 32 1 2.1206 -1.9059 -1.5212 33 1 2.1206 -0.3644 -2.4111 34 1 3.5739 -0.8779 -1.5214 35 1 2.5364 -2.7986 0.5823 36 1 3.3559 -3.9596 2.5931 37 1 3.5440 -3.9220 5.0135 38 1 3.5447 -2.3804 5.9032 39 1 4.1190 -4.0545 7.0220 40 1 5.2364 -5.1599 8.9159 41 1 8.6988 -6.0358 8.9972 42 1 7.7453 -3.8195 10.6122 43 1 7.9284 -3.0872 5.3438 44 1 3.3475 -0.2675 4.7281 45 1 2.5350 0.8947 2.7152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_11680688_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:40 Heat of formation + Delta-G solvation = -110.334394 kcal Electronic energy + Delta-G solvation = -25094.589254 eV Core-core repulsion = 21308.000535 eV Total energy + Delta-G solvation = -3786.588718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.85107 -41.41788 -40.09764 -38.93181 -37.21313 -33.39985 -32.00129 -31.94725 -31.44141 -29.62102 -28.48184 -28.45479 -27.62783 -26.25264 -24.16957 -23.54990 -22.74767 -21.93027 -19.76642 -18.61790 -17.91330 -17.51148 -17.23753 -17.02953 -16.80111 -16.46072 -16.14989 -15.75757 -15.60851 -15.55397 -15.05526 -14.85768 -14.42593 -14.29183 -14.19832 -14.14118 -14.01882 -13.90275 -13.73796 -13.39595 -13.35489 -13.28566 -13.26629 -13.14155 -12.90873 -12.42364 -12.30287 -12.10880 -12.09780 -11.84604 -11.72246 -11.08982 -10.94610 -10.88915 -10.45782 -9.98215 -9.84273 -9.75984 -9.36712 0.02497 0.06681 0.09219 0.48476 1.08019 1.34451 1.46878 1.65142 1.80182 1.80504 1.85738 2.10155 2.39286 2.49854 2.93516 3.28946 3.42910 3.46201 3.67328 3.70329 3.74691 3.82969 3.99180 4.12262 4.14114 4.17416 4.32272 4.44530 4.53228 4.61721 4.66358 4.67505 4.71338 4.71990 4.72395 4.72498 4.76981 4.87849 4.93407 5.08872 5.09318 5.10110 5.34042 5.41547 5.45866 5.49720 5.54856 5.56858 5.57518 6.04528 6.19706 6.53641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.091 4.091 9 C 0.099 3.901 10 O -0.302 6.302 11 C 0.168 3.832 12 C -0.216 4.216 13 C -0.057 4.057 14 C -0.195 4.195 15 C -0.077 4.077 16 O -0.535 6.535 17 Si 0.954 3.046 18 H -0.248 1.248 19 H -0.250 1.250 20 H -0.251 1.251 21 C 0.171 3.829 22 F -0.123 7.123 23 C -0.191 4.191 24 C -0.106 4.106 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.375 0.625 43 H 0.147 0.853 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 0.442 -1.136 5.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.401 4.401 6 C -0.110 4.110 7 C -0.124 4.124 8 C -0.091 4.091 9 C 0.025 3.975 10 O -0.215 6.215 11 C 0.122 3.878 12 C -0.235 4.235 13 C -0.075 4.075 14 C -0.197 4.197 15 C -0.187 4.187 16 O -0.340 6.340 17 Si 0.776 3.224 18 H -0.171 1.171 19 H -0.174 1.174 20 H -0.175 1.175 21 C 0.151 3.849 22 F -0.101 7.101 23 C -0.210 4.210 24 C -0.124 4.124 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.135 0.865 42 H 0.222 0.778 43 H 0.165 0.835 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.811 -0.313 -0.949 4.913 hybrid contribution -0.041 0.403 0.078 0.413 sum -4.852 0.090 -0.871 4.931 Atomic orbital electron populations 1.26124 1.20406 1.04590 1.04535 0.78181 0.66849 0.66133 0.63654 1.26139 1.06518 1.18534 1.04594 1.26140 1.06516 1.08046 1.15083 1.27499 1.02858 0.99518 1.10243 1.21089 0.97457 0.94683 0.97728 1.21157 0.98713 0.99921 0.92572 1.19416 1.01149 0.94206 0.94351 1.21718 0.78175 1.00687 0.96923 1.86193 1.21327 1.72368 1.41627 1.18618 0.91323 0.91156 0.86716 1.21251 1.00701 1.05226 0.96312 1.20777 0.92878 0.96351 0.97490 1.20262 0.94006 1.06393 0.99025 1.24899 1.06368 0.96172 0.91266 1.86568 1.37709 1.46809 1.62889 0.85644 0.77241 0.79169 0.80334 1.17100 1.17389 1.17494 1.17014 0.77162 0.96850 0.93875 1.91553 1.28416 1.94056 1.96092 1.20324 0.92637 1.07099 1.00964 1.21153 0.98730 0.93515 0.98963 1.21090 0.97469 0.99794 0.92600 0.91165 0.90978 0.91163 0.91019 0.90910 0.91163 0.91165 0.90910 0.91020 0.85827 0.86073 0.90670 0.90676 0.84392 0.84663 0.86472 0.77787 0.83541 0.86074 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.86 8.65 101.05 0.87 1.73 16 2 Si 1.06 -3.00 12.32 -169.99 -2.09 -5.09 16 3 C -0.45 0.90 8.53 101.05 0.86 1.76 16 4 C -0.45 0.90 8.53 101.05 0.86 1.76 16 5 C -0.36 0.20 4.59 -39.58 -0.18 0.02 16 6 C -0.09 0.01 9.29 -39.58 -0.37 -0.36 16 7 C -0.11 -0.05 9.70 -39.58 -0.38 -0.44 16 8 C -0.09 -0.06 5.51 -104.63 -0.58 -0.64 16 9 C 0.10 -0.05 4.87 36.00 0.18 0.12 16 10 O -0.30 -0.53 10.12 -19.41 -0.20 -0.73 16 11 C 0.17 0.24 6.69 -39.22 -0.26 -0.03 16 12 C -0.22 0.04 9.04 -39.42 -0.36 -0.31 16 13 C -0.06 0.01 8.65 -39.61 -0.34 -0.33 16 14 C -0.20 -0.21 5.27 -104.53 -0.55 -0.76 16 15 C -0.08 -0.03 2.45 36.00 0.09 0.06 16 16 O -0.53 -0.67 12.88 -35.23 -0.45 -1.12 16 17 Si 0.95 -0.80 25.48 -169.99 -4.33 -5.13 16 18 H -0.25 0.08 7.11 56.52 0.40 0.48 16 19 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 20 H -0.25 0.36 6.74 56.52 0.38 0.74 16 21 C 0.17 0.43 7.24 -39.44 -0.29 0.14 16 22 F -0.12 -0.48 16.75 2.25 0.04 -0.45 16 23 C -0.19 -0.39 9.97 -39.37 -0.39 -0.78 16 24 C -0.11 -0.05 9.70 -39.58 -0.38 -0.44 16 25 C -0.09 0.01 9.29 -39.58 -0.37 -0.36 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 32 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 35 H 0.12 -0.24 7.43 -52.49 -0.39 -0.63 16 36 H 0.12 -0.10 8.06 -52.49 -0.42 -0.53 16 37 H 0.08 -0.15 7.60 -51.93 -0.39 -0.54 16 38 H 0.08 -0.15 7.60 -51.93 -0.39 -0.54 16 39 H 0.14 -0.34 6.30 -52.48 -0.33 -0.67 16 40 H 0.14 -0.28 4.88 -52.49 -0.26 -0.54 16 41 H 0.12 0.04 7.90 -51.93 -0.41 -0.37 16 42 H 0.38 -0.90 8.70 45.56 0.40 -0.51 16 43 H 0.15 0.21 8.06 -52.49 -0.42 -0.21 16 44 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 45 H 0.12 -0.24 7.43 -52.49 -0.39 -0.63 16 LS Contribution 379.59 15.07 5.72 5.72 Total: 0.00 -5.97 379.59 -8.86 -14.82 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -5.95 Total: -9.17 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.59 Total: 1.16 kcal Atomic # 8 Polarization: -1.20 SS G_CDS: -0.65 Total: -1.85 kcal Atomic # 9 Polarization: -0.48 SS G_CDS: 0.04 Total: -0.45 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: -6.43 Total: -10.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -5.97 -8.86 -14.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.512 kcal (2) G-P(sol) polarization free energy of solvation -5.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds