Wall clock time and date at job start Tue Mar 9 2021 13:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38342 * 119.97596 * 2 1 4 4 Cl 1.73601 * 119.96012 * 0.02562 * 3 2 1 5 5 C 1.38393 * 120.08080 * 179.97438 * 3 2 1 6 6 C 1.38115 * 120.04400 * 0.02562 * 5 3 2 7 7 C 1.50705 * 120.02229 * 179.97438 * 6 5 3 8 8 O 1.42900 * 109.46928 * 105.02437 * 7 6 5 9 9 Si 1.86295 * 109.46964 * 345.02624 * 7 6 5 10 10 C 1.38740 * 119.96005 * 0.02562 * 6 5 3 11 11 O 1.35919 * 120.04599 * 179.97438 * 10 6 5 12 12 C 1.42905 * 117.00019 * 179.97438 * 11 10 6 13 13 C 1.52999 * 109.46728 * 179.97438 * 12 11 10 14 14 H 1.08995 * 112.85385 * 316.19442 * 13 12 11 15 15 C 1.53778 * 113.61377 * 87.50774 * 13 12 11 16 16 C 1.53781 * 87.08330 * 139.97641 * 15 13 12 17 17 H 1.09001 * 113.61407 * 89.11889 * 16 15 13 18 18 O 1.42900 * 113.69268 * 220.00554 * 16 15 13 19 19 C 1.53774 * 87.07980 * 334.56637 * 16 15 13 20 20 C 1.38160 * 119.97675 * 180.28088 * 2 1 3 21 21 H 1.08995 * 109.47120 * 89.99818 * 1 2 3 22 22 H 1.08994 * 109.46873 * 210.00355 * 1 2 3 23 23 H 1.08995 * 109.46734 * 329.99559 * 1 2 3 24 24 H 1.08007 * 119.97694 * 180.02562 * 5 3 2 25 25 H 1.08998 * 109.46983 * 225.02545 * 7 6 5 26 26 H 0.96703 * 113.99868 * 60.00180 * 8 7 6 27 27 H 1.48497 * 110.00203 * 299.99680 * 9 7 6 28 28 H 1.48500 * 110.00330 * 61.31666 * 9 7 6 29 29 H 1.09000 * 109.47187 * 300.00215 * 12 11 10 30 30 H 1.09001 * 109.46558 * 60.00263 * 12 11 10 31 31 H 1.09003 * 113.61683 * 254.52849 * 15 13 12 32 32 H 1.09008 * 113.61715 * 25.42811 * 15 13 12 33 33 H 0.96697 * 114.00023 * 277.53857 * 18 16 15 34 34 H 1.08999 * 113.61743 * 270.88146 * 19 16 15 35 35 H 1.09008 * 113.61375 * 139.97992 * 19 16 15 36 36 H 1.07997 * 120.02667 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1984 0.0000 4 17 1.3286 2.7008 0.0007 5 6 3.5822 1.2009 0.0005 6 6 4.2759 0.0066 0.0005 7 6 5.7830 0.0099 0.0005 8 8 6.2600 -0.3383 1.3018 9 14 6.4001 1.7081 -0.4533 10 6 3.5845 -1.1963 -0.0005 11 8 4.2654 -2.3726 -0.0011 12 6 3.4884 -3.5720 -0.0016 13 6 4.4218 -4.7842 -0.0028 14 1 5.2541 -4.6769 -0.6983 15 6 4.8467 -5.2359 1.4044 16 6 4.6843 -6.6809 0.9041 17 1 5.5894 -7.0927 0.4577 18 8 4.0907 -7.5576 1.8640 19 6 3.6853 -6.1286 -0.1262 20 6 2.1974 -1.1968 -0.0059 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3632 0.8899 0.5139 24 1 4.1202 2.1375 0.0010 25 1 6.1479 -0.7156 -0.7264 26 1 5.9766 -1.2121 1.6038 27 1 5.9109 2.0820 -1.8046 28 1 5.9358 2.7017 0.5479 29 1 2.8595 -3.5979 0.8884 30 1 2.8596 -3.5970 -0.8917 31 1 5.8745 -4.9736 1.6555 32 1 4.1362 -4.9614 2.1843 33 1 4.7141 -7.9082 2.5148 34 1 2.6574 -6.0981 0.2350 35 1 3.7755 -6.5870 -1.1111 36 1 1.6575 -2.1321 -0.0109 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12058104_11354858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:18 Heat of formation + Delta-G solvation = -77.475627 kcal Electronic energy + Delta-G solvation = -20525.262786 eV Core-core repulsion = 17195.956065 eV Total energy + Delta-G solvation = -3329.306721 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82087 -40.40254 -38.94995 -37.94721 -37.24042 -36.02575 -34.22105 -31.31827 -29.65018 -29.12874 -26.73724 -25.40457 -24.61580 -22.92342 -22.38990 -20.54514 -19.07587 -18.60997 -18.37258 -17.79893 -17.28803 -17.02009 -16.34923 -16.08963 -15.69298 -15.45910 -15.12629 -15.03255 -14.68106 -14.36929 -13.89602 -13.72410 -13.49188 -13.46403 -13.22010 -12.91233 -12.86638 -12.61880 -12.34754 -12.30731 -12.11803 -11.99658 -11.65440 -11.32278 -11.20162 -11.10171 -10.74700 -10.15276 -9.32264 -4.89445 -0.17000 -0.08770 0.95870 1.30018 1.58129 1.87338 1.88754 2.21408 3.25987 3.31205 3.40216 3.43218 3.55072 3.69764 3.76501 3.78699 3.91269 3.94957 4.08259 4.18146 4.19891 4.29991 4.34923 4.37683 4.52346 4.62282 4.66101 4.75299 4.77574 4.79985 4.83227 4.98368 5.02137 5.11481 5.12547 5.29750 5.38687 6.10806 6.57653 6.86462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.086 4.086 4 Cl -0.067 7.067 5 C -0.087 4.087 6 C -0.154 4.154 7 C -0.075 4.075 8 O -0.544 6.544 9 Si 0.804 3.196 10 C 0.153 3.847 11 O -0.310 6.310 12 C 0.065 3.935 13 C -0.102 4.102 14 H 0.111 0.889 15 C -0.162 4.162 16 C 0.071 3.929 17 H 0.098 0.902 18 O -0.583 6.583 19 C -0.122 4.122 20 C -0.195 4.195 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.131 0.869 25 H 0.090 0.910 26 H 0.374 0.626 27 H -0.267 1.267 28 H -0.288 1.288 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.395 0.605 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -4.791 -1.274 5.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.033 4.033 3 C -0.113 4.113 4 Cl -0.038 7.038 5 C -0.105 4.105 6 C -0.156 4.156 7 C -0.184 4.184 8 O -0.350 6.350 9 Si 0.706 3.294 10 C 0.106 3.894 11 O -0.223 6.223 12 C -0.010 4.010 13 C -0.120 4.120 14 H 0.129 0.871 15 C -0.199 4.199 16 C 0.013 3.987 17 H 0.115 0.885 18 O -0.391 6.391 19 C -0.160 4.160 20 C -0.214 4.214 21 H 0.108 0.892 22 H 0.110 0.890 23 H 0.092 0.908 24 H 0.148 0.852 25 H 0.108 0.892 26 H 0.223 0.777 27 H -0.193 1.193 28 H -0.216 1.216 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.245 0.755 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.118 -3.202 -1.867 3.871 hybrid contribution -1.162 -0.869 0.598 1.569 sum -0.043 -4.071 -1.269 4.264 Atomic orbital electron populations 1.21005 0.88185 1.04604 1.04156 1.19891 0.98084 0.90290 0.95051 1.20748 0.91928 0.87748 1.10839 1.98362 1.76423 1.31872 1.97113 1.20806 0.92756 0.97825 0.99128 1.19740 0.97520 0.90328 1.07988 1.25245 0.89466 1.14827 0.88830 1.86685 1.75751 1.40426 1.32178 0.92505 0.90225 0.70285 0.76404 1.18820 0.90554 0.85757 0.94244 1.86046 1.36312 1.12201 1.87734 1.23083 0.94202 0.81002 1.02669 1.22278 0.99259 0.91410 0.99057 0.87093 1.23744 1.02868 0.96747 0.96570 1.23419 0.96725 0.88300 0.90285 0.88470 1.86477 1.41161 1.65952 1.45522 1.23088 0.99493 0.93726 0.99646 1.21386 0.92504 0.99407 1.08070 0.89184 0.89033 0.90767 0.85156 0.89226 0.77721 1.19294 1.21594 0.90858 0.90382 0.90214 0.89908 0.75502 0.89420 0.89378 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.19 9.61 71.24 0.68 0.87 16 2 C -0.03 -0.10 5.88 -19.86 -0.12 -0.21 16 3 C -0.09 -0.56 6.31 22.33 0.14 -0.42 16 4 Cl -0.07 -0.42 27.29 -2.72 -0.07 -0.49 16 5 C -0.09 -0.66 8.44 22.28 0.19 -0.47 16 6 C -0.15 -0.85 5.28 -19.77 -0.10 -0.96 16 7 C -0.08 -0.23 2.33 71.24 0.17 -0.06 16 8 O -0.54 -2.24 12.65 -148.98 -1.89 -4.13 16 9 Si 0.80 1.72 30.40 68.60 2.09 3.80 16 10 C 0.15 0.44 6.62 22.50 0.15 0.59 16 11 O -0.31 0.02 9.04 -92.64 -0.84 -0.82 16 12 C 0.06 -0.29 4.58 71.98 0.33 0.04 16 13 C -0.10 0.55 4.01 -10.27 -0.04 0.51 16 14 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 15 C -0.16 0.73 7.47 31.12 0.23 0.96 16 16 C 0.07 -0.28 5.21 31.12 0.16 -0.12 16 17 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 18 O -0.58 0.34 13.67 -148.98 -2.04 -1.69 16 19 C -0.12 0.56 7.47 31.12 0.23 0.79 16 20 C -0.20 -0.18 8.69 22.36 0.19 0.02 16 21 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 22 H 0.09 -0.45 8.09 -2.39 -0.02 -0.47 16 23 H 0.07 -0.02 6.90 -2.39 -0.02 -0.03 16 24 H 0.13 1.06 4.94 -2.91 -0.01 1.04 16 25 H 0.09 0.03 7.83 -2.39 -0.02 0.01 16 26 H 0.37 0.01 8.61 -74.06 -0.64 -0.62 16 27 H -0.27 -1.36 7.11 99.48 0.71 -0.66 16 28 H -0.29 -2.38 6.81 99.48 0.68 -1.70 16 29 H 0.07 -0.38 7.38 -2.39 -0.02 -0.40 16 30 H 0.08 -0.48 7.65 -2.39 -0.02 -0.50 16 31 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.08 -0.22 7.90 -2.38 -0.02 -0.24 16 33 H 0.39 -3.25 9.12 -74.06 -0.68 -3.93 16 34 H 0.09 -0.29 8.10 -2.39 -0.02 -0.31 16 35 H 0.09 -0.53 8.14 -2.38 -0.02 -0.55 16 36 H 0.16 -0.72 6.30 -2.91 -0.02 -0.74 16 Total: 0.00 -12.22 312.37 -0.72 -12.94 By element: Atomic # 1 Polarization: -10.97 SS G_CDS: -0.19 Total: -11.15 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 2.22 Total: 1.54 kcal Atomic # 8 Polarization: -1.88 SS G_CDS: -4.76 Total: -6.64 kcal Atomic # 14 Polarization: 1.72 SS G_CDS: 2.09 Total: 3.80 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.07 Total: -0.49 kcal Total: -12.22 -0.72 -12.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12058104_11354858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.535 kcal (2) G-P(sol) polarization free energy of solvation -12.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds