Wall clock time and date at job start Tue Mar 9 2021 13:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38340 * 119.97764 * 2 1 4 4 Cl 1.73600 * 119.95725 * 0.02562 * 3 2 1 5 5 C 1.38390 * 120.08624 * 179.97438 * 3 2 1 6 6 C 1.38117 * 120.04040 * 359.79540 * 5 3 2 7 7 C 1.50707 * 120.02267 * 180.25069 * 6 5 3 8 8 O 1.42900 * 109.47081 * 105.22947 * 7 6 5 9 9 Si 1.86298 * 109.46761 * 345.23246 * 7 6 5 10 10 C 1.38745 * 119.95802 * 0.48230 * 6 5 3 11 11 O 1.35924 * 120.04480 * 179.77115 * 10 6 5 12 12 C 1.42900 * 117.00071 * 179.72203 * 11 10 6 13 13 C 1.53000 * 109.46928 * 180.02562 * 12 11 10 14 14 H 1.09002 * 112.85291 * 316.19725 * 13 12 11 15 15 C 1.53786 * 113.61460 * 87.50545 * 13 12 11 16 16 C 1.53782 * 87.07991 * 139.97911 * 15 13 12 17 17 H 1.09002 * 113.68548 * 220.00340 * 16 15 13 18 18 N 1.46505 * 113.61081 * 89.11677 * 16 15 13 19 19 C 1.34777 * 119.99722 * 107.50446 * 18 16 15 20 20 O 1.21513 * 120.00316 * 359.97438 * 19 18 16 21 21 O 1.34638 * 119.99672 * 179.72257 * 19 18 16 22 22 C 1.45202 * 116.99776 * 180.27362 * 21 19 18 23 23 C 1.53000 * 109.46964 * 60.00058 * 22 21 19 24 24 C 1.53008 * 109.46858 * 179.97438 * 22 21 19 25 25 C 1.52988 * 109.47138 * 299.99572 * 22 21 19 26 26 C 1.53776 * 87.08305 * 334.56542 * 16 15 13 27 27 C 1.38160 * 119.98089 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46820 * 269.97459 * 1 2 3 29 29 H 1.08996 * 109.46825 * 29.97793 * 1 2 3 30 30 H 1.08996 * 109.46705 * 149.97652 * 1 2 3 31 31 H 1.08002 * 119.98183 * 180.02562 * 5 3 2 32 32 H 1.08992 * 109.47073 * 225.23239 * 7 6 5 33 33 H 0.96701 * 114.00250 * 300.00700 * 8 7 6 34 34 H 1.48502 * 109.99595 * 180.02562 * 9 7 6 35 35 H 1.48503 * 109.99939 * 301.31664 * 9 7 6 36 36 H 1.08992 * 109.46860 * 60.00314 * 12 11 10 37 37 H 1.09000 * 109.46934 * 299.99770 * 12 11 10 38 38 H 1.09001 * 113.61468 * 25.43069 * 15 13 12 39 39 H 1.09001 * 113.60973 * 254.53016 * 15 13 12 40 40 H 0.97000 * 119.99795 * 287.49562 * 18 16 15 41 41 H 1.08997 * 109.47363 * 60.00315 * 23 22 21 42 42 H 1.09005 * 109.46795 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46811 * 299.99419 * 23 22 21 44 44 H 1.08996 * 109.46984 * 60.00080 * 24 22 21 45 45 H 1.08996 * 109.46584 * 179.97438 * 24 22 21 46 46 H 1.08998 * 109.47272 * 300.00133 * 24 22 21 47 47 H 1.09001 * 109.47346 * 60.00146 * 25 22 21 48 48 H 1.09005 * 109.47300 * 180.02562 * 25 22 21 49 49 H 1.09004 * 109.47621 * 300.00303 * 25 22 21 50 50 H 1.09002 * 113.61634 * 139.98020 * 26 16 15 51 51 H 1.09003 * 113.61635 * 270.88547 * 26 16 15 52 52 H 1.08004 * 120.02315 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1983 0.0000 4 17 1.3286 2.7008 0.0007 5 6 3.5822 1.2010 0.0005 6 6 4.2759 0.0066 0.0053 7 6 5.7829 0.0100 0.0116 8 8 6.2546 -0.3408 1.3141 9 14 6.4019 1.7091 -0.4362 10 6 3.5845 -1.1962 -0.0005 11 8 4.2654 -2.3726 -0.0005 12 6 3.4884 -3.5719 -0.0005 13 6 4.4218 -4.7842 0.0002 14 1 5.2548 -4.6776 -0.6948 15 6 4.8457 -5.2346 1.4082 16 6 4.6837 -6.6801 0.9091 17 1 4.2305 -7.3481 1.6416 18 7 5.9007 -7.2340 0.3103 19 6 6.6102 -8.1708 0.9703 20 8 6.2408 -8.5556 2.0621 21 8 7.7255 -8.6839 0.4176 22 6 8.4359 -9.6932 1.1824 23 6 7.5131 -10.8880 1.4310 24 6 9.6667 -10.1543 0.3990 25 6 8.8762 -9.1013 2.5227 26 6 3.6855 -6.1287 -0.1225 27 6 2.1975 -1.1967 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 4.1201 2.1375 0.0010 32 1 6.1509 -0.7140 -0.7152 33 1 5.9649 0.2617 2.0128 34 1 7.8869 1.7254 -0.4341 35 1 5.8921 2.0987 -1.7755 36 1 2.8598 -3.5975 -0.8904 37 1 2.8597 -3.5975 0.8895 38 1 4.1347 -4.9593 2.1872 39 1 5.8733 -4.9720 1.6596 40 1 6.1957 -6.9266 -0.5611 41 1 7.1995 -11.3097 0.4761 42 1 8.0463 -11.6455 2.0055 43 1 6.6361 -10.5598 1.9889 44 1 10.3242 -9.3032 0.2215 45 1 10.2001 -10.9116 0.9733 46 1 9.3526 -10.5760 -0.5558 47 1 7.9993 -8.7731 3.0806 48 1 9.4099 -9.8589 3.0967 49 1 9.5337 -8.2500 2.3456 50 1 3.7764 -6.5880 -1.1069 51 1 2.6572 -6.0979 0.2380 52 1 1.6575 -2.1321 -0.0014 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12058104_15734082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:01 Heat of formation + Delta-G solvation = -106.062706 kcal Electronic energy + Delta-G solvation = -33423.753204 eV Core-core repulsion = 28803.184516 eV Total energy + Delta-G solvation = -4620.568688 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.158 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.02081 -41.60199 -40.46202 -38.90003 -37.97250 -37.82179 -37.05523 -35.40557 -34.25138 -33.96026 -31.13689 -29.58605 -29.09478 -28.40514 -28.33965 -26.75931 -25.37829 -25.01967 -23.72970 -22.84656 -22.20943 -21.20764 -20.28723 -19.38447 -18.96716 -18.27773 -17.66774 -17.48658 -17.27195 -17.10639 -16.86428 -16.50391 -16.03716 -15.89717 -15.56786 -15.44547 -15.42198 -15.11232 -15.07544 -14.85436 -14.49921 -14.24121 -14.08674 -13.78882 -13.67090 -13.44928 -13.38712 -13.30712 -13.16553 -12.95982 -12.90899 -12.85557 -12.72415 -12.61878 -12.48902 -12.36625 -12.31427 -12.16135 -11.96216 -11.72945 -11.64024 -11.56130 -11.43839 -11.19585 -11.15846 -10.42910 -10.23203 -9.98630 -9.14392 -5.06446 0.00658 0.11352 1.08942 1.15645 1.25842 1.59406 1.67481 1.91687 2.08638 2.39004 3.06548 3.36918 3.41735 3.47288 3.57869 3.68405 3.70205 3.73352 3.77384 3.80396 3.89716 3.90509 3.97751 4.22391 4.27880 4.35231 4.42414 4.44029 4.45784 4.50523 4.57442 4.58053 4.67773 4.70651 4.72569 4.72704 4.74270 4.79341 4.83831 4.85646 4.89791 4.94575 5.00807 5.01571 5.04210 5.13577 5.17033 5.23438 5.27853 5.28370 5.43450 5.49657 5.57342 6.31037 6.32375 6.77178 7.27835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.087 4.087 4 Cl -0.064 7.064 5 C -0.064 4.064 6 C -0.162 4.162 7 C -0.055 4.055 8 O -0.551 6.551 9 Si 0.764 3.236 10 C 0.154 3.846 11 O -0.315 6.315 12 C 0.061 3.939 13 C -0.104 4.104 14 H 0.096 0.904 15 C -0.145 4.145 16 C 0.130 3.870 17 H 0.098 0.902 18 N -0.685 5.685 19 C 0.646 3.354 20 O -0.592 6.592 21 O -0.371 6.371 22 C 0.127 3.873 23 C -0.179 4.179 24 C -0.138 4.138 25 C -0.180 4.180 26 C -0.116 4.116 27 C -0.202 4.202 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.099 0.901 33 H 0.392 0.608 34 H -0.294 1.294 35 H -0.284 1.284 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.415 0.585 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.088 0.912 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.122 0.878 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -0.244 -1.148 3.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.032 4.032 3 C -0.113 4.113 4 Cl -0.035 7.035 5 C -0.082 4.082 6 C -0.163 4.163 7 C -0.165 4.165 8 O -0.358 6.358 9 Si 0.670 3.330 10 C 0.108 3.892 11 O -0.228 6.228 12 C -0.014 4.014 13 C -0.123 4.123 14 H 0.114 0.886 15 C -0.183 4.183 16 C 0.025 3.975 17 H 0.116 0.884 18 N -0.344 5.344 19 C 0.399 3.601 20 O -0.482 6.482 21 O -0.285 6.285 22 C 0.091 3.909 23 C -0.236 4.236 24 C -0.195 4.195 25 C -0.238 4.238 26 C -0.154 4.154 27 C -0.221 4.221 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.175 0.825 32 H 0.116 0.884 33 H 0.241 0.759 34 H -0.221 1.221 35 H -0.210 1.210 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.252 0.748 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.141 0.859 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.421 -0.431 -1.493 2.877 hybrid contribution -0.049 -0.298 -0.466 0.555 sum -2.470 -0.729 -1.959 3.236 Atomic orbital electron populations 1.20994 0.88618 1.04411 1.03996 1.19855 0.97797 0.90566 0.94996 1.20710 0.92217 0.87458 1.10943 1.98372 1.76508 1.31541 1.97115 1.20820 0.92187 0.97568 0.97611 1.19649 0.96766 0.90656 1.09217 1.24921 0.90841 1.11769 0.88995 1.86512 1.75493 1.57289 1.16519 0.94086 0.77530 0.77981 0.83427 1.18970 0.90560 0.86013 0.93676 1.86166 1.36502 1.12600 1.87557 1.23122 0.94108 0.81191 1.02937 1.22584 0.99035 0.92500 0.98131 0.88560 1.23546 1.02339 0.95058 0.97399 1.21872 0.83916 0.94512 0.97175 0.88423 1.44398 1.26338 1.40598 1.23096 1.18315 0.79653 0.79437 0.82649 1.90903 1.71639 1.63996 1.21692 1.86312 1.36779 1.55104 1.50330 1.22370 0.91792 0.85380 0.91390 1.22470 1.00841 0.97420 1.02914 1.21896 0.94276 1.02424 1.00893 1.22476 1.02469 1.02222 0.96596 1.23322 0.99288 0.92648 1.00102 1.21318 0.92295 0.99492 1.08952 0.89376 0.90685 0.89491 0.82450 0.88354 0.75871 1.22127 1.21043 0.90103 0.90242 0.87883 0.92642 0.74771 0.91835 0.89389 0.91734 0.91351 0.88203 0.91088 0.91786 0.89328 0.92172 0.88905 0.85937 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.50 9.61 71.24 0.68 1.19 16 2 C -0.03 0.01 5.88 -19.86 -0.12 -0.10 16 3 C -0.09 -0.09 6.31 22.33 0.14 0.05 16 4 Cl -0.06 -0.06 27.28 -2.72 -0.07 -0.14 16 5 C -0.06 -0.01 8.44 22.28 0.19 0.18 16 6 C -0.16 -0.31 5.27 -19.77 -0.10 -0.41 16 7 C -0.06 -0.12 2.38 71.24 0.17 0.05 16 8 O -0.55 -1.66 12.88 -148.98 -1.92 -3.58 16 9 Si 0.76 -0.13 29.91 68.60 2.05 1.92 16 10 C 0.15 0.33 6.66 22.50 0.15 0.48 16 11 O -0.32 -0.78 9.47 -92.70 -0.88 -1.65 16 12 C 0.06 -0.27 4.58 71.98 0.33 0.06 16 13 C -0.10 0.48 3.89 -10.26 -0.04 0.44 16 14 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 15 C -0.14 0.19 7.43 31.12 0.23 0.42 16 16 C 0.13 -0.19 4.32 45.52 0.20 0.01 16 17 H 0.10 0.16 7.46 -2.39 -0.02 0.14 16 18 N -0.69 -0.78 5.27 -567.59 -2.99 -3.77 16 19 C 0.65 4.88 8.06 129.79 1.05 5.93 16 20 O -0.59 -7.49 11.48 19.80 0.23 -7.26 16 21 O -0.37 -2.41 9.94 -55.47 -0.55 -2.97 16 22 C 0.13 0.48 1.13 -10.80 -0.01 0.46 16 23 C -0.18 -0.64 8.37 71.98 0.60 -0.03 16 24 C -0.14 0.18 8.85 71.98 0.64 0.82 16 25 C -0.18 -0.78 8.37 71.98 0.60 -0.18 16 26 C -0.12 0.89 7.39 31.12 0.23 1.12 16 27 C -0.20 0.22 8.69 22.36 0.19 0.41 16 28 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.07 -0.23 6.90 -2.39 -0.02 -0.24 16 30 H 0.09 -0.59 8.08 -2.39 -0.02 -0.61 16 31 H 0.16 -0.63 5.12 -2.91 -0.01 -0.64 16 32 H 0.10 0.49 7.83 -2.39 -0.02 0.47 16 33 H 0.39 -2.07 8.70 -74.06 -0.64 -2.72 16 34 H -0.29 -2.02 7.11 99.48 0.71 -1.31 16 35 H -0.28 -1.33 7.11 99.48 0.71 -0.62 16 36 H 0.08 -0.59 7.66 -2.39 -0.02 -0.61 16 37 H 0.08 -0.53 7.36 -2.39 -0.02 -0.55 16 38 H 0.10 -0.30 7.89 -2.39 -0.02 -0.31 16 39 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.42 -1.19 8.81 -92.71 -0.82 -2.01 16 41 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.09 0.00 8.14 -2.38 -0.02 -0.02 16 43 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 44 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.06 0.62 5.88 -2.39 -0.01 0.60 16 48 H 0.09 0.05 8.14 -2.38 -0.02 0.03 16 49 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 50 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 51 H 0.12 -1.36 8.10 -2.39 -0.02 -1.38 16 52 H 0.16 -0.95 6.30 -2.91 -0.02 -0.97 16 Total: 0.00 -19.10 427.62 0.53 -18.57 By element: Atomic # 1 Polarization: -11.55 SS G_CDS: -0.47 Total: -12.02 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.13 Total: 10.89 kcal Atomic # 7 Polarization: -0.78 SS G_CDS: -2.99 Total: -3.77 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -3.12 Total: -15.46 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: 2.05 Total: 1.92 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -0.07 Total: -0.14 kcal Total: -19.10 0.53 -18.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12058104_15734082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.491 kcal (2) G-P(sol) polarization free energy of solvation -19.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds